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Tropical wetlands are a significant source of atmospheric methane (CH 4 ), but their importance to the global CH 4 budget is uncertain due to a paucity of direct observations. Net wetland emissions result from complex interactions and co-variation between microbial production and oxidation in the soil, and transport to the atmosphere. Here we show that phenology is the overarching control of net CH 4 emissions to the atmosphere from a permanent, vegetated tropical swamp in the Okavango Delta, Botswana, and we find that vegetative processes modulate net CH 4 emissions at sub-daily to inter-annual timescales. Without considering the role played by papyrus on regulating the efflux of CH 4 to the atmosphere, the annual budget for the entire Okavango Delta, would be under- or over-estimated by a factor of two. Our measurements demonstrate the importance of including vegetative processes such as phenological cycles into wetlands emission budgets of CH 4 . Tropical wetlands are a significant but understudied source of methane. Here, methane emissions were measured over three years in a perennial tropical swamp in the Okavango Delta, Botswana, finding phenology was the overarching control of emissions.

Agricultural and forest soils with low organic C content and high alkalinity were studied over 17 days to investigate the potential response of the atmospheric pollutant nitric oxide (NO) and the greenhouse gas nitrous oxide (N2O) on (1) increased N deposition rates to forest soil; (2) different fertilizer types to agricultural soil and (3) a simulated rain event to forest and agricultural soils. Cumulative forest soil NO emissions (148–350 ng NO-N g−1) were ~ 4 times larger than N2O emissions (37–69 ng N2O-N g−1). Contrary, agricultural soil NO emissions (21–376 ng NO-N g−1) were ~ 16 times smaller than N2O emissions (45–8491 ng N2O-N g−1). Increasing N deposition rates 10 fold to 30 kg N ha−1 yr−1, doubled soil NO emissions and NO3− concentrations. As such high N deposition rates are not atypical in China, more attention should be paid on forest soil NO research. Comparing the fertilizers urea, ammonium nitrate, and urea coated with the urease inhibitor ‘Agrotain®,’ demonstrated that the inhibitor significantly reduced NO and N2O emissions. This is an unintended, not well-known benefit, because the primary function of Agrotain® is to reduce emissions of the atmospheric pollutant ammonia. Simulating a climate change event, a large rainfall after drought, increased soil NO and N2O emissions from both agricultural and forest soils. Such pulses of emissions can contribute significantly to annual NO and N2O emissions, but currently do not receive adequate attention amongst the measurement and modeling communities.

In Southeast Asia, oil palm (OP) plantations have largely replaced tropical forests. The impact of this shift in land use on greenhouse gas (GHG) fluxes remains highly uncertain, mainly due to a relatively small pool of available data. The aim of this study is to quantify differences of nitrous oxide (N2O) and methane (CH4) fluxes as well as soil carbon dioxide (CO2) respiration rates from logged forests, oil palm plantations of different ages, and an adjacent small riparian area. Nitrous oxide fluxes are the focus of this study, as these emissions are expected to increase significantly due to the nitrogen (N) fertilizer application in the plantations. This study was conducted in the SAFE (Stability of Altered Forest Ecosystems) landscape in Malaysian Borneo (Sabah) with measurements every 2 months over a 2-year period. GHG fluxes were measured by static chambers together with key soil physicochemical parameters and microbial biodiversity. At all sites, N2O fluxes were spatially and temporally highly variable. On average the largest fluxes (incl. 95 % CI) were measured from OP plantations (45.1 (24.0–78.5) µg m−2 h−1 N2O-N), slightly smaller fluxes from the riparian area (29.4 (2.8–84.7) µg m−2 h−1 N2O-N), and the smallest fluxes from logged forests (16.0 (4.0–36.3) µg m−2 h−1 N2O-N). Methane fluxes were generally small (mean ± SD): −2.6 ± 17.2 µg CH4-C m−2 h−1 for OP and 1.3 ± 12.6 µg CH4-C m−2 h−1 for riparian, with the range of measured CH4 fluxes being largest in logged forests (2.2 ± 48.3 µg CH4-C m−2 h−1). Soil respiration rates were larger from riparian areas (157.7 ± 106 mg m−2 h−1 CO2-C) and logged forests (137.4 ± 95 mg m−2 h−1 CO2-C) than OP plantations (93.3 ± 70 mg m−2 h−1 CO2-C) as a result of larger amounts of decomposing leaf litter. Microbial communities were distinctly different between the different land-use types and sites. Bacterial communities were linked to soil pH, and fungal and eukaryotic communities were linked to land use. Despite measuring a large number of environmental parameters, mixed models could only explain up to 17 % of the variance of measured fluxes for N2O, 3 % of CH4, and 25 % of soil respiration. Scaling up measured N2O fluxes to Sabah using land areas for forest and OP resulted in emissions increasing from 7.6 Mt (95 % confidence interval, −3.0–22.3 Mt) yr−1 in 1973 to 11.4 Mt (0.2–28.6 Mt) yr−1 in 2015 due to the increasing area of forest converted to OP plantations over the last ∼ 40 years.

Significant climate risks are associated with a positive carbon–temperature feedback in northern latitude carbon-rich ecosystems, making an accurate analysis of human impacts on the net greenhouse gas balance of wetlands a priority. Here, we provide a coherent assessment of the climate footprint of a network of wetland sites based on simultaneous and quasi-continuous ecosystem observations of CO ₂ and CH ₄ fluxes. Experimental areas are located both in natural and in managed wetlands and cover a wide range of climatic regions, ecosystem types, and management practices. Based on direct observations we predict that sustained CH ₄ emissions in natural ecosystems are in the long term (i.e., several centuries) typically offset by CO ₂ uptake, although with large spatiotemporal variability. Using a space-for-time analogy across ecological and climatic gradients, we represent the chronosequence from natural to managed conditions to quantify the “cost” of CH ₄ emissions for the benefit of net carbon sequestration. With a sustained pulse–response radiative forcing model, we found a significant increase in atmospheric forcing due to land management, in particular for wetland converted to cropland. Our results quantify the role of human activities on the climate footprint of northern wetlands and call for development of active mitigation strategies for managed wetlands and new guidelines of the Intergovernmental Panel on Climate Change (IPCC) accounting for both sustained CH ₄ emissions and cumulative CO ₂ exchange. Significance Wetlands are unique ecosystems because they are in general sinks for carbon dioxide and sources of methane. Their climate footprint therefore depends on the relative sign and magnitude of the land–atmosphere exchange of these two major greenhouse gases. This work presents a synthesis of simultaneous measurements of carbon dioxide and methane fluxes to assess the radiative forcing of natural wetlands converted to agricultural or forested land. The net climate impact of wetlands is strongly dependent on whether they are natural or managed. Here we show that the conversion of natural wetlands produces a significant increase of the atmospheric radiative forcing. The findings suggest that management plans for these complex ecosystems should carefully account for the potential biogeochemical effects on climate.

Peatland landscapes typically exhibit large variations in greenhouse gas (GHG) emissions due to microtopographic and vegetation heterogeneity. As many peatland budgets are extrapolated from smallscale chamber measurements it is important to both quantify and understand the processes underlying this spatial variability. Here we carried out a mesocosm study which allowed a comparison to be made between different microtopographic features and vegetation communities, in response to conditions of both static and changing water table. Three mesocosm types (hummocks+Juncus effusus, hummocks+Eriophorum vaginatum, and hollows dominated by moss) were subjected to two water table treatments (0–5 cm and 30–35 cm depth). Measurements were made of soil-atmosphere GHG exchange, GHG concentration within the peat profile and soil water solute concentrations. After 14 weeks the high water table group was drained and the low water table group flooded. Measurement intensity was then increased to examine the immediate response to change in water table position. Mean CO2, CH4 and N2O exchange across all chambers was 39.8 μg m-2 s-1, 54.7 μg m-2 h-1 and -2.9 μg m-2 h-1, respectively. Hence the GHG budget was dominated in this case by CO2 exchange. CO2 and N2O emissions were highest in the low water table treatment group; CH4 emissions were highest in the saturated mesocosms. We observed a strong interaction between mesocosm type and water table for CH4 emissions. In contrast to many previous studies, we found that the presence of aerenchyma-containing vegetation reduced CH4 emissions. A significant pulse in both CH4 and N2O emissions occurred within 1–2 days of switching the water table treatments. This pulsing could potentially lead to significant underestimation of landscape annual GHG budgets when widely spaced chamber measurements are upscaled.

This letter provides an overview of the available measurement techniques for nitrous oxide (N2O) flux measurement. It is presented to aid the choice of the most appropriate methods for different situations. Nitrous oxide is a very potent greenhouse gas; the effect of 1 kg of N2O is estimated to be equivalent to 300 kg of CO2. Emissions of N2O from the soil have a larger uncertainty compared to other greenhouse gases. Important reasons for this are low atmospheric concentration levels and enormous spatial and temporal variability. Traditionally such small increases are measured by chambers and analyzed by gas chromatography. Spatial and temporal resolution is poor, but costs are low. To detect emissions at the field scale and high temporal resolution, differences at tens of ppt levels need to be resolved. Reliable instruments are now available to measure N2O by a range of micrometeorological methods, but at high financial cost. Although chambers are effective in identifying processes and treatment effects and mitigation, the future lies with the more versatile high frequency and high sensitivity sensors.

Regional estimates of VOC fluxes focus largely on emissions from the canopy and omit potential contributions from the forest floor including soil, litter and understorey vegetation. Here, we measured monoterpene emissions every 2 months over 2 years from logged tropical forest and oil palm plantation floor in Malaysian Borneo using static flux chambers. The main emitted monoterpenes were α-pinene, β-pinene and d-limonene. The amount of litter present was the strongest indicator for higher monoterpene fluxes. Mean α-pinene fluxes were around 2.5–3.5 μg C m −2 h −1 from the forest floor with occasional fluxes exceeding 100 μg C m −2 h −1 . Fluxes from the oil palm plantation, where hardly any litter was present, were lower (on average 0.5–2.9 μg C m −2 h −1 ) and only higher when litter was present. All other measured monoterpenes were emitted at lower rates. No seasonal trends could be identified for all monoterpenes and mean fluxes from both forest and plantation floor were ~ 100 times smaller than canopy emission rates reported in the literature. Occasional spikes of higher emissions from the forest floor, however, warrant further investigation in terms of underlying processes and their contribution to regional scale atmospheric fluxes.

Physiological and ecological studies have provided evidence for pH-driven niche specialization of ammonia oxidizers in terrestrial ecosystems. However, the functional stability of ammonia oxidizers following pH change has not been investigated, despite its importance in understanding the maintenance of ecosystem processes following environmental perturbation. This is particularly true after anthropogenic perturbation, such as the conversion of tropical forest to oil palm plantations. This study demonstrated a great impact of land-use conversion on nitrification, which is linked to changes in soil pH due to common agricultural practices (intensive fertilization). In addition, the different communities of ammonia oxidizers were differently affected by short-term pH perturbations, with implications for future land-use conversions but also for increased knowledge of associated global nitrous oxide emissions and current climate change concerns. Rapidly expanding conversion of tropical forests to oil palm plantations in Southeast Asia leads to soil acidification following intensive nitrogen fertilization. Changes in soil pH are predicted to have an impact on archaeal ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), and complete (comammox) ammonia oxidizers and, consequently, on nitrification. It is therefore critical to determine whether the predicted effects of pH on ammonia oxidizers and nitrification activity apply in tropical soils subjected to various degrees of anthropogenic activity. This was investigated by experimental manipulation of pH in soil microcosms from a land-use gradient (forest, riparian, and oil palm soils). The nitrification rate was greater in forest soils with native neutral pH than in converted acidic oil palm soils. Ammonia oxidizer activity decreased following acidification of the forest soils but increased after liming of the oil palm soils, leading to a trend of a reversed net nitrification rate after pH modification. AOA and AOB nitrification activity was dependent on pH, but AOB were more sensitive to pH modification than AOA, which demonstrates a greater stability of AOA than AOB under conditions of short-term perturbation. In addition, these results predict AOB to be a good bioindicator of nitrification response following pH perturbation during land-use conversion. AOB and/or comammox species were active in all soils along the land-use gradient, even, unexpectedly, under acidic conditions, suggesting their adaptation to native acidic or acidified soils. The present study therefore provided evidence for limited stability of soil ammonia oxidizer activity following intensive anthropogenic activities, which likely aggravates the vulnerability of nitrogen cycle processes to environmental disturbance. IMPORTANCE Physiological and ecological studies have provided evidence for pH-driven niche specialization of ammonia oxidizers in terrestrial ecosystems. However, the functional stability of ammonia oxidizers following pH change has not been investigated, despite its importance in understanding the maintenance of ecosystem processes following environmental perturbation. This is particularly true after anthropogenic perturbation, such as the conversion of tropical forest to oil palm plantations. This study demonstrated a great impact of land-use conversion on nitrification, which is linked to changes in soil pH due to common agricultural practices (intensive fertilization). In addition, the different communities of ammonia oxidizers were differently affected by short-term pH perturbations, with implications for future land-use conversions but also for increased knowledge of associated global nitrous oxide emissions and current climate change concerns.

Intensively managed grazed grasslands in temperate climates are globally important environments for the exchange of the greenhouse gases (GHGs) carbon dioxide (CO2), nitrous oxide (N2O) and methane (CH4). We assessed the N and C budget of a mostly grazed and occasionally cut and fertilised grassland in SE Scotland by measuring or modelling all relevant imports and exports to the field as well as changes in soil C and N stocks over time. The N budget was dominated by import from inorganic and organic fertilisers (21.9 g N m−2 a−1) and losses from leaching (5.3 g N m−2 a−1), N2 emissions (2.9 g N m−2 a−1), and NOx and NH3 volatilisation (3.9 g N m−2 a−1), while N2O emission was only 0.6 g N m−2 a−1. The efficiency of N use by animal products (meat and wool) averaged 9.9 % of total N input over only-grazed years (2004–2010). On average over 9 years (2002–2010), the balance of N fluxes suggested that 6.0 ± 5.9 g N m−2 a−1 (mean ± confidence interval at p > 0.95) were stored in the soil. The largest component of the C budget was the net ecosystem exchange of CO2 (NEE), at an average uptake rate of 218 ± 155 g C m−2 a−1 over the 9 years. This sink strength was offset by carbon export from the field mainly as grass offtake for silage (48.9 g C m−2 a−1) and leaching (16.4 g C m−2 a−1). The other export terms, CH4 emissions from the soil, manure applications and enteric fermentation, were negligible and only contributed to 0.02–4.2 % of the total C losses. Only a small fraction of C was incorporated into the body of the grazing animals. Inclusion of these C losses in the budget resulted in a C sink strength of 163 ± 140 g C m−2 a−1. By contrast, soil stock measurements taken in May 2004 and May 2011 indicated that the grassland sequestered N in the 0–60 cm soil layer at 4.51 ± 2.64 g N m−2 a−1 and lost C at a rate of 29.08 ± 38.19 g C m−2 a−1. Potential reasons for the discrepancy between these estimates are probably an underestimation of C losses, especially from leaching fluxes as well as from animal respiration. The average greenhouse gas (GHG) balance of the grassland was −366 ± 601 g CO2 eq. m−2 yr−1 and was strongly affected by CH4 and N2O emissions. The GHG sink strength of the NEE was reduced by 54 % by CH4 and N2O emissions. Estimated enteric fermentation from ruminating sheep proved to be an important CH4 source, exceeding the contribution of N2O to the GHG budget in some years.