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"Smyth, David"
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Handbook on agriculture biotechnology and development
by
Smyth, Stuart, editor
,
Phillips, Peter W. B., editor
,
Castle, David, 1967- editor
in
Agricultural biotechnology.
,
Technology.
2015
This title provides a diverse, but concentrated, global perspective on biotechnology applications to plant agriculture. Readers gain rich insights into specific aspects of agbiotech, anchored in an overarching governance framework that determines trade and regulation of agbiotech processes.
Evolution and genetic control of the floral ground plan
2018
The floral ground plan is a map of where and when floral organ primordia arise. New results combining the defined phylogeny of flowering plants with extensive character mapping have predicted that the angiosperm ancestor had whorls rather than spirals of floral organs in large numbers, and was bisexual. More confidently, the monocot ancestor likely had three organs in each whorl, whereas the rosid and asterid ancestor (Pentapetalae) had five, with the perianth now divided into sepals and petals. Genetic mechanisms underlying the establishment of the floral ground plan are being deduced using model species, the rosid Arabidopsis, the asterid Antirrhinum, and in grasses such as rice. In this review, evolutionary and genetic conclusions are drawn together, especially considering how known genes may control individual processes in the development and evolution of ground plans. These components include organ phyllotaxis, boundary formation, organ identity, merism (the number or organs per whorl), variation in the form of primordia, organ fusion, intercalary growth, floral symmetry, determinacy and, finally, cases where the distinction between flowers and inflorescences is blurred. It seems likely that new pathways of ground plan evolution, and new signalling mechanisms, will soon be uncovered by integrating morphological and genetic approaches.
Journal Article
Injectable human recombinant collagen matrices limit adverse remodeling and improve cardiac function after myocardial infarction
2019
Despite the success of current therapies for acute myocardial infarction (MI), many patients still develop adverse cardiac remodeling and heart failure. With the growing prevalence of heart failure, a new therapy is needed that can prevent remodeling and support tissue repair. Herein, we report on injectable recombinant human collagen type I (rHCI) and type III (rHCIII) matrices for treating MI. Injecting rHCI or rHCIII matrices in mice during the late proliferative phase post-MI restores the myocardium’s mechanical properties and reduces scar size, but only the rHCI matrix maintains remote wall thickness and prevents heart enlargement. rHCI treatment increases cardiomyocyte and capillary numbers in the border zone and the presence of pro-wound healing macrophages in the ischemic area, while reducing the overall recruitment of bone marrow monocytes. Our findings show functional recovery post-MI using rHCI by promoting a healing environment, cardiomyocyte survival, and less pathological remodeling of the myocardium.
Many patients, following therapy for acute myocardial infarction, develop adverse cardiac remodelling. Here the authors present injectable recombinant human collagen 10 of 10 type I and III matrices that are able to limit adverse remodelling and improve function of the myocardium.
Journal Article
Local proliferation dominates lesional macrophage accumulation in atherosclerosis
2013
Macrophages are abundant in atherosclerotic plaques and are a pivotal cell type in plaque formation and progression. But how do they get there? Filip Swirski and his colleagues show that, contrary to most previous work that has emphasized the importance of monocyte recruitment from the blood, most macrophages in established lesions are generated by local macrophage proliferation, which depends on the SR-A scavenger receptor.
During the inflammatory response that drives atherogenesis, macrophages accumulate progressively in the expanding arterial wall
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. The observation that circulating monocytes give rise to lesional macrophages
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,
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has reinforced the concept that monocyte infiltration dictates macrophage buildup. Recent work has indicated, however, that macrophage accumulation does not depend on monocyte recruitment in some inflammatory contexts
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. We therefore revisited the mechanism underlying macrophage accumulation in atherosclerosis. In murine atherosclerotic lesions, we found that macrophages turn over rapidly, after 4 weeks. Replenishment of macrophages in these experimental atheromata depends predominantly on local macrophage proliferation rather than monocyte influx. The microenvironment orchestrates macrophage proliferation through the involvement of scavenger receptor A (SR-A). Our study reveals macrophage proliferation as a key event in atherosclerosis and identifies macrophage self-renewal as a therapeutic target for cardiovascular disease.
Journal Article
The benthic sea-silk-thread displacement of a sessile bivalve, Pinctada imbricata radiata (Leach, 1819) in the Arabian-Persian Gulf
2019
A number of molluscs within the Class Bivalvia are defined by their ability to secrete fine silk like threads known as byssus which are used to anchor themselves to solid substrates. With relatively few exceptions the majority of these species remain in a sedentary state throughout their life attached via their byssal threads. However, observations of adult Pinctada imbricata radiata pearl oysters made during this study revealed this species’ ability to implement active movement. Byssal threads were secreted in a sequence of attachment and detachment phases, which resulted in the active displacement of the oyster. The oyster was observed, in the laboratory over a 9 day period, travelling a distance of 28cm in a horizontal path. After horizontal displacement, a vertical climbing phase was observed until the oyster reached the water surface at which point the byssus was discarded and the animal dropped, drifting in accordance with water current intensity. It is possible that these adaptations of byssal use are a result of environmentally induced evolutionary change within P. i. radiata.
Journal Article
The history of the European native oyster Ostrea edulis in Northern Irish waters and the four phases of resource exploitation
by
Smyth, David
,
Kirkpatrick, Jade
,
Millar, Rachel
in
Anthropogenic factors
,
Archives & records
,
Artisanal fisheries
2024
An in-depth history of the European native oyster in Northern Irish waters has been absent from international and regional peer-reviewed publications. The knowledge of historical losses and a need to recover ecosystems for habitat and biodiversity purposes are primary drivers in an urgency to restore Ostrea edulis . However, a comprehensive record of O. edulis in Northern Ireland is required to assist with this work. The authors compiled a list of relevant references from grey material, rare historical archives, library collections, government reports and peer-reviewed publications. Archival reviews have been tabulated into a timeline, which documents site location, exploitation, sites of significant interest and socio-economic histories of the coastal communities who relied on the oyster. The reference material identified four distinctive phases of exploitation whereby harvesting transits from personal use to commercialization, collapse and then restoration. The study revealed that O. edulis harvests in the early 1800s in Northern Ireland were predominantly destined for export to supply collapsing stocks throughout Britain. Fishing was intense with the fishery closed by 1903. However, the species has proved to be extremely resilient with small artisanal fisheries still in existence today. This research will offer habitat managers guidance in relation to site selection and anthropogenic pressures when restoring the European flat oyster to the iconic historical beds of the Northern Irish Sea loughs.
Journal Article
TRANSPARENT TESTA GLABRA2, a Trichome and Seed Coat Development Gene of Arabidopsis, Encodes a WRKY Transcription Factor
by
Smyth, David R.
,
Johnson, Cameron S.
,
Kolevski, Ben
in
Amino Acid Sequence
,
amino acid sequences
,
Arabidopsis
2002
Mutants of a new gene, TRANSPARENT TESTA GLABRA2 (TTG2), show disruptions to trichome development and to tannin and mucilage production in the seed coat. The gene was tagged by the endogenous transposon Tag1 and shown to encode a WRKY transcription factor. It is the first member of this large, plant-specific family known to control morphogenesis. The functions of all other WRKY genes revealed to date involve responses to pathogen attack, mechanical stress, and senescence. TTG2 is strongly expressed in trichomes throughout their development, in the endothelium of developing seeds (in which tannin is later generated) and subsequently in other layers of the seed coat, and in the atrichoblasts of developing roots. TTG2 acts downstream of the trichome initiation genes TTG1 and GLABROUS1, although trichome expression of TTG2 continues to occur if they are inactivated. Later, TTG2 shares functions with GLABRA2 in controlling trichome outgrowth. In the seed coat, TTG2 expression requires TTG1 function in the production of tannin. Finally, TTG2 also may be involved in specifying atrichoblasts in roots redundantly with other gene(s) but independently of TTG1 and GLABRA2.
Journal Article
Regulation of tissue-specific expression of SPATULA, a bHLH gene involved in carpel development, seedling germination, and lateral organ growth in Arabidopsis
by
Lampugnani, Edwin R.
,
Bylstra, Yasmin
,
Smyth, David R.
in
Arabidopsis
,
Arabidopsis - genetics
,
Arabidopsis - growth & development
2010
SPATULA is a bHLH transcription factor that promotes growth of tissues arising from the carpel margins, including the septum and transmitting tract. It is also involved in repressing germination of newly harvested seeds, and in inhibiting cotyledon, leaf, and petal expansion. Using a reporter gene construct, its expression profile was fully defined. Consistent with its known functions, SPT was expressed in developing carpel margin tissues, and in the hypocotyls and cotyledons of germinating seedlings, and in developing leaves and petals. It was also strongly expressed in tissues where no functions have been identified to date, including the dehiscence zone of fruits, developing anthers, embryos, and in the epidermal initials and new stele of root tips. The promoter region of SPT was dissected by truncation and deletion, and two main regions occupied by tissue-specific enhancers were identified. These were correlated with eight regions conserved between promoter regions of Arabidopsis, Brassica oleracea, and Brassica rapa. When transformed into Arabidopsis, the B. oleracea promoter drove expression in reproductive tissues mostly comparable to the equivalent Arabidopsis promoter. There is genetic evidence that SPT function in the gynoecium is associated with the perception of auxin. However, site-directed mutagenesis of three putative auxin-response elements had no detectable effect on SPT expression patterns. Even so, disruption of a putative E-box variant adjacent to one of these resulted in a loss of valve dehiscence zone expression. This expression was also specifically lost in mutants of another bHLH gene INDEHISCENT, indicating that IND may directly regulate SPT expression through this variant E-box.
Journal Article
No Observed Effects of Subsea Renewable Energy Infrastructure on Benthic Environments
2023
For the tidal energy industry to move forward to commercialisation, understanding the interaction between the environment and tidal energy converters (TEC) is essential. The benthic environment may be particularly vulnerable to development by changing the existing physical and ecological characteristics. To assess measurable changes of the infrastructural and operation activity of the Deep Green subsea TEC known as the kite, developed by Minesto, benthic surveys were carried out in the Narrows, Strangford Lough, Northern Ireland. At the Minesto site and two other locations, scientific divers carried out circular cardinal-direction benthic camera surveys prior to and after five years of operation. A diverse assemblage of sessile, vagile and mobile species associated with substrate types were identified. No significant changes at any of the sites were recorded in the abundance of species, substrate type or species diversity over the five-year period. The results show that no impact on benthic communities was detected as a result of the operation and deployment of the infrastructure associated with the technology.
Journal Article