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result(s) for
"St. Amand, P"
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Construction of dense linkage maps “on the fly” using early generation wheat breeding populations
by
Eckard, J. T
,
St Amand, P
,
Gonzalez-Hernandez, J. L
in
Algorithms
,
Biomedical and Life Sciences
,
Biotechnology
2014
In plant species, construction of framework linkage maps to facilitate quantitative trait loci mapping and molecular breeding has been confined to experimental mapping populations. However, development and evaluation of these populations is detached from breeding efforts for cultivar development. In this study, we demonstrate that dense and reliable linkage maps can be constructed using extant breeding populations derived from a large number of crosses, thus eliminating the need for extraneous population development. Using 565 segregating F₁ progeny from 28 four-way cross breeding populations, a linkage map of the hexaploid wheat genome consisting of 3,785 single nucleotide polymorphism (SNP) loci and 22 simple sequence repeat loci was developed. Map estimation was facilitated by application of mapping algorithms for general pedigrees implemented in the software package CRI-MAP. The developed linkage maps showed high rank-order concordance with a SNP consensus map developed from seven mapping studies. Therefore, the linkage mapping methodology presented here represents a resource efficient approach for plant breeding programs that enables development of dense linkage maps “on the fly” to support molecular breeding efforts.
Journal Article
Risk of alfalfa transgene dissemination and scale-dependent effects
by
Peaden, R. N.
,
Amand, P. C. St
,
Skinner, D. Z.
in
Alfalfa
,
Biological and medical sciences
,
Biotechnology
2000
Pollen can function as a vehicle to disseminate introduced, genetically engineered genes throughout a plant population or into a related species. The measurement of the risk of inadvertent dispersal of transgenes must include the assessment of accidental dispersion of pollen. Factors to be considered include the rate of pollen spread, the maximal dispersion distance of pollen, and the spatial dynamics of pollen movement within seed production fields; none of which are known for alfalfa (Medicago sativa L.), an insect-pollinated crop species. Using a rare, naturally occurring molecular marker, alfalfa pollen movement was tracked from seed and hay production fields. Results indicated that leafcutter bees (Megachile spp.) used in commercial seed production show a directional, non-random bias when pollinating within fields, primarily resulting in the movement of pollen directly towards and away from the bee domicile. Within-field pollen movement was detected only over distances of 4 m or less. Dispersal of pollen from alfalfa hay and seed production fields occurs at distances up to 1000 m. By examining widely dispersed, individual escaped alfalfa plants and their progeny using RAPD markers, gene movement among escaped alfalfa plants has been confirmed for distances up to 230 m. The out-crossing frequency for large fields was nearly 10-times greater than that of research-sized plots. A minimum isolation distance of 1557 m may be required to prevent gene flow in alfalfa. Data suggest that complete containment of transgenes within alfalfa seed or hay production fields would be highly unlikely using current production practices.
Journal Article
Genomic diversity in pearl millet inbred lines derived from landraces and improved varieties
by
Gangashetty, P I
,
Bernardo, A
,
Rhodes, D
in
Agricultural research
,
Alleles
,
Animal Genetics and Genomics
2020
Background: Genetic improvement of pearl millet is lagging behind most of the major crops. Development of genomic resources is expected to expedite breeding for improved agronomic traits, stress tolerance, yield, and nutritional quality. Genotyping a breeding population with high throughput markers enables exploration of genetic diversity, population structure, and linkage disequilibrium (LD) which are important preludes for marker-trait association studies and application of genomic-assisted breeding. Results: Genotyping-by-sequencing (GBS) libraries of 309 inbred lines derived from landraces and improved varieties from Africa and India generated 54,770 high quality single nucleotide polymorphism (SNP) markers. On average one SNP per 29 Kb was mapped in the reference genome, with the telomeric regions more densely mapped than the pericentromeric regions of the chromosomes. Population structure analysis using 30,208 SNPs evenly distributed in the genome divided 309 accessions into five subpopulations with different levels of admixture. Pairwise genetic distance (GD) between accessions varied from 0.09 to 0.33 with the average distance of 0.28. Rapid LD decay implied low tendency of markers inherited together. Genetic differentiation estimates were the highest between subgroups 4 and 5, and the lowest between subgroups 1 and 2. Conclusions: Population genomic analysis of pearl millet inbred lines derived from diverse geographic and agroecological features identified five subgroups mostly following pedigree differences with different levels of admixture. It also revealed the prevalence of high genetic diversity in pearl millet, which is very useful in defining heterotic groups for hybrid breeding, trait mapping, and holds promise for improving pearl millet for yield and nutritional quality. The short LD decay observed suggests an absence of persistent haplotype blocks in pearl millet. The diverse genetic background of these lines and their low LD make this set of germplasm useful for traits mapping.
Journal Article
Relative fitness of imazamox-resistant common sunflower and prairie sunflower
2005
Resistance to imidazolinone (IMI) herbicides has been incorporated recently into domesticated sunflower through conventional breeding methods. However, there are concerns regarding gene flow of the IMI-resistance trait to wild species and possible accompanying ecological consequences. Hybrids of domesticated sunflower with both common sunflower and prairie sunflower were created, with and without the imazamox-resistance trait. The relative fitness of imazamox-resistant (IMI-R) hybrids was compared with their imazamox-susceptible (IMI-S) counterparts. Greenhouse experiments were conducted to study the growth of IMI-R and IMI-S common and prairie sunflower hybrids under noncompetitive conditions. The photosynthesis rate of IMI-S prairie sunflower was slightly higher than that of IMI-R plants. However, relative growth rate, net assimilation rate, leaf area, and total dry weight were similar in IMI-R and IMI-S common and prairie sunflower, whereas plant height of IMI-S hybrid was greater than that of IMI-R common sunflower hybrids. A replacement series study was conducted under field conditions in 2001 and 2002 to evaluate the relative competitiveness of IMI-R and IMI-S common and prairie sunflower. IMI-R and IMI-S hybrids of both sunflower species were equally competitive. The results suggest that, in the absence of IMI herbicides, genes controlling IMI-R do not reduce or increase the competitive ability of either common or prairie sunflower. Therefore, if the IMI-resistant trait is incorporated in these species, the frequency of IMI-resistance genes is unlikely to decrease, even in the absence of IMI selection pressure. Nomenclature: Imazamox; common sunflower, Helianthus annuus L.; prairie sunflower, Helianthus petiolaris Nutt.
Journal Article
Gene flow from imidazolinone-resistant domesticated sunflower to wild relatives
2003
Gene flow from imidazolinone (IMI)-resistant domestic sunflower to IMI-susceptible common sunflower and prairie sunflower was studied. Under greenhouse conditions, pollen from IMI-resistant domesticated sunflower was applied to flower heads of IMI-susceptible common and prairie sunflower. In addition, field studies were conducted in 2000 and 2001 near Manhattan, KS, to evaluate IMI-resistant gene flow from IMI-resistant domesticated sunflower to common and prairie sunflower under natural conditions. Common and prairie sunflower were planted in concentric circles at distances of 2.5, 5, 15, and 30 m around a densely planted IMI-resistant domesticated sunflower species. For both greenhouse and field studies, IMI-resistant gene flow was determined by treating the progeny of both wild species with 40 g ai ha−1 of imazamox. Greenhouse crosses made by hand showed that 94% of common sunflower and 79% of prairie sunflower were resistant or moderately resistant. The resistant plants were allowed to grow in the greenhouse and were backcrossed with the corresponding susceptible wild parents. Progeny of the backcross showed a 1:1 ratio of resistant to susceptible plants. In the field, gene flow was detected up to 30 m from the pollen source for both species, and it decreased as distance from the pollen source increased. In 2000, 11 to 22% of the progeny were resistant at 2.5 m from the pollen source and 0.3 to 5% were resistant at 30 m. In 2001, the number of resistant progeny did not exceed 7 and 2% at 2.5 and 30 m from the pollen source, respectively. The results of this study showed that IMI-resistant domesticated sunflower outcrosses with common and prairie sunflower over distances typically encountered near production fields. Also, backcrosses of resistant hybrids with wild parents are successful, further increasing the potential for the spread of IMI-resistant feral sunflowers.
Journal Article
Gene flow from imidazolinone-resistant domesticated sunflower to wild relatives
by
St Amand, P
,
Miller, J F
,
Massinga, R A
in
Helianthus
,
Helianthus annuus
,
Helianthus petiolaris
2003
Gene flow from imidazolinone (IMI)-resistant domestic sunflower to IMI-susceptible common sunflower and prairie sunflower was studied. Under greenhouse conditions, pollen from IMI-resistant domesticated sunflower was applied to flower heads of IMI-susceptible common and prairie sunflower. In addition, field studies were conducted in 2000 and 2001 near Manhattan, KS, to evaluate IMI-resistant gene flow from IMI-resistant domesticated sunflower to common and prairie sunflower under natural conditions. Common and prairie sunflower were planted in concentric circles at distances of 2.5, 5, 15, and 30 m around a densely planted IMI-resistant domesticated sunflower species. For both greenhouse and field studies, IMI-resistant gene flow was determined by treating the progeny of both wild species with 40 g ai ha-1 of imazamox. Greenhouse crosses made by hand showed that 94% of common sunflower and 79% of prairie sunflower were resistant or moderately resistant. The resistant plants were allowed to grow in the greenhouse and were backcrossed with the corresponding susceptible wild parents. Progeny of the backcross showed a 1:1 ratio of resistant to susceptible plants. In the field, gene flow was detected up to 30 m from the pollen source for both species, and it decreased as distance from the pollen source increased. In 2000, 11 to 22% of the progeny were resistant at 2.5 m from the pollen source and 0.3 to 5% were resistant at 30 m. In 2001, the number of resistant progeny did not exceed 7 and 2% at 2.5 and 30 m from the pollen source, respectively. The results of this study showed that IMI-resistant domesticated sunflower outcrosses with common and prairie sunflower over distances typically encountered near production fields. Also, backcrosses of resistant hybrids with wild parents are successful, further increasing the potential for the spread of IMI-resistant feral sunflowers. Nomenclature: Common sunflower, Helianthus annuus; prairie sunflower, Helianthus petiolaris.
Journal Article
Rate of Solution of Ice Nuclei in Water Drops and Its Effect on Nucleation
1972
The time required for an ice nucleus of radius rA to dissolve in a water drop of radius rD is found for solubilities ranging from 5×10−10 gm cm−3 (pure silver iodide at 0C) to 10−3 gm cm−3. The basic assumption is that the dissolution of the liquid-solid interface is rapid compared to the diffusion of solute from the interface to the bulk of the solution, and hence the latter controls the rate of solution. The calculations show that most ice nuclei smaller than 0.01 or 0.05 μ in radius will be dissolved within a period of a few seconds and in some cases within a fraction of a second.
Journal Article
Mechanism for Multiplication of Atmospheric Ice Crystals: Apparent Charge Distribution on Laboratory Crystals
by
McEwan, William S.
,
St. Amand, Pierre
,
Odencrantz, F. Kirk
in
Animal cells
,
Cell culture techniques
,
Cell lines
1968
Replication of ice crystals with vapor of methyl 2-cyanoacrylate has produced evidence of whiskers on them; an additional mechanism for the necessary multiplication of ice crystals in the atmosphere is suggested. This replication technique also confirms crystal clustering in the atmosphere and appears to confirm the distribution of electrical charge on ice crystals.
Journal Article
Redox‐engineering enhances maize thermotolerance and grain yield in the field
by
St. Amand, Paul
,
Oliveira Garcia, Ely
,
Hu, Ying
in
Abiotic stress
,
Abortion
,
Agricultural production
2022
Summary Increasing populations and temperatures are expected to escalate food demands beyond production capacities, and the development of maize lines with better performance under heat stress is desirable. Here, we report that constitutive ectopic expression of a heterologous glutaredoxin S17 from Arabidopsis thaliana (AtGRXS17) can provide thermotolerance in maize through enhanced chaperone activity and modulation of heat stress‐associated gene expression. The thermotolerant maize lines had increased protection against protein damage and yielded a sixfold increase in grain production in comparison to the non‐transgenic counterparts under heat stress field conditions. The maize lines also displayed thermotolerance in the reproductive stages, resulting in improved pollen germination and the higher fidelity of fertilized ovules under heat stress conditions. Our results present a robust and simple strategy for meeting rising yield demands in maize and, possibly, other crop species in a warming global environment.
Journal Article