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Studies of inflammatory bowel disease (IBD) have been inconclusive in relating microbiota with distribution of inflammation. We report microbiota, host transcriptomics, epigenomics and genetics from matched inflamed and non-inflamed colonic mucosa [50 Crohn’s disease (CD); 80 ulcerative colitis (UC); 31 controls]. Changes in community-wide and within-patient microbiota are linked with inflammation, but we find no evidence for a distinct microbial diagnostic signature, probably due to heterogeneous host-microbe interactions, and show only marginal microbiota associations with habitual diet. Epithelial DNA methylation improves disease classification and is associated with both inflammation and microbiota composition. Microbiota sub-groups are driven by dominant Enterbacteriaceae and Bacteroides species, representative strains of which are pro-inflammatory in vitro, are also associated with immune-related epigenetic markers. In conclusion, inflamed and non-inflamed colonic segments in both CD and UC differ in microbiota composition and epigenetic profiles. Inflammatory bowel disease (IBD) has been linked to host-microbiota interactions. Here, the authors investigate mucosa-associated microbiota using endoscopically-targeted biopsies from inflamed and non-inflamed colon in patients with Crohn’s disease and ulcerative colitis, finding associations with inflammation and host epigenomic alterations.

Chloride concentrations are increasing at a rate that threatens the availability of fresh water in the northeastern United States. Increases in roadways and deicer use are now salinizing fresh waters, degrading habitat for aquatic organisms, and impacting large supplies of drinking water for humans throughout the region. We observed chloride concentrations of up to 25% of the concentration of seawater in streams of Maryland, New York, and New Hampshire during winters, and chloride concentrations remaining up to 100 times greater than unimpacted forest streams during summers. Mean annual chloride concentration increased as a function of impervious surface and exceeded tolerance for freshwater life in suburban and urban watersheds. Our analysis shows that if salinity were to continue to increase at its present rate due to changes in impervious surface coverage and current management practices, many surface waters in the northeastern United States would not be potable for human consumption and would become toxic to freshwater life within the next century.

A major quantitative trait locus (QTL), Qfhs.ndsu-3BS, for resistance to Fusarium head blight (FHB) in wheat has been identified and verified by several research groups. The objectives of this study were to construct a fine genetic map of this QTL region and to examine microcolinearity in the QTL region among wheat, rice, and barley. Two simple sequence repeat (SSR) markers (Xgwm533 and Xgwm493) flanking this QTL were used to screen for recombinants in a population of 3,156 plants derived from a single F₇ plant heterozygous for the Qfhs.ndsu-3BS region. A total of 382 recombinants were identified, and they were genotyped with two more SSR markers and eight sequence-tagged site (STS) markers. A fine genetic map of the Qfhs.ndsu-3BS region was constructed and spanned 6.3 cM. Based on replicated evaluations of homozygous recombinant lines for Type II FHB resistance, Qfhs.ndsu-3BS, redesignated as Fhb1, was placed into a 1.2-cM marker interval flanked by STS3B-189 and STS3B-206. Primers of STS markers were designed from wheat expressed sequence tags homologous to each of six barley genes expected to be located near this QTL region. A comparison of the wheat fine genetic map and physical maps of rice and barley revealed inversions and insertions/deletions. This suggests a complex microcolinearity among wheat, rice, and barley in this QTL region.

PurposeTo characterise determinants of resident maternity leave and their effect on maternal and infant well-being. Among non-parents, to identify factors that influence the decision to delay childbearingStudy designIn 2016, a survey was sent to female residents at a large academic medical centre on their experiences with maternity leave, the impact of personal and programme factors on length of leave, reasons for delaying childbearing and measures of well-being.ResultsForty-four percent (214/481) of residents responded. Fifty (23%) residents were parents, and 25 (12%) took maternity leave during training. The average maternity leave length was 8.4 weeks and did not differ across programme type, size or programme director gender but was longer for programmes with fewer women than men. The most common self-reported determinant of leave was financial. Residents with >8 weeks of leave were less likely to have postpartum depression or burnout and more likely to breastfeed longer, perceive support from colleagues and programme directors, and be satisfied with resident parenthood. Among 104 non-parents who were married or partnered, 84 (81%) were delaying childbearing, citing busy work schedules, concern for burdening colleagues and finances.ConclusionsThis study suggests that multiple aspects of resident wellbeing are associated with longer maternity leaves, yet finances and professional relationships hinder length of leave and lead to delayed childbearing. These issues could be addressed at a programme level with clear policies describing how work is redistributed during parental leave and at an institutional and state level through provision of paid family leave.

Tumour necrosis factor-α (TNFα) is thought to have a central role in the pathogenesis of Crohn's disease. We tested the hypothesis that CDP571, a genetically engineered human antibody to TNFα, is effective in modifying disease activity in patients with moderately active Crohn's disease. In this double-blind, placebo-controlled study, 31 patients were randomly assigned to CDP571 (n=21) or placebo (n=10). The primary endpoint was change in Crohn's disease activity index 2 weeks after a single infusion of CDP571 (5 mg/kg), or human albumin as placebo. One patient who attended no follow-up assessments was excluded from the analyses (CDP571 group). The median Crohn's disease activity index fell from 263 (IQR 186·5–323·5) at baseline to 167 (137·5–294·0) at 2 weeks in the CDP571-treated patients (p=0·0003); the change in the placebo group (253 [240–334] to 247 [183–256]) was not significant. In the treated group, there were also significant differences between baseline and 2 weeks in Harvey-Bradshaw score (p=0·0005), key symptom score (p=0·049), α1-glycoprotein concentration (p=0·012), and erythrocyte sedimentation rate (p=0·01); concentrations of C-reactive protein fell, but not significantly (p=0·067). Six patients achieved remission (Crohn's disease activity index ≤150) and three others had activity indices of 156 or lower. There were no significant changes in the placebo group. A single 5 mg/kg infusion of CDP571 reduced disease activity in Crohn's disease at 2 weeks. These data suggest that antibody neutralisation of TNFα is a potentially effective strategy in the management of Crohn's disease. The use of CDP571 in Crohn's disease requires further study.

A key objective of the Perseverance rover mission is to acquire samples of Martian rocks for future return to Earth. Eventual laboratory analyses of these samples would address key questions about the evolution of the Martian climate, interior, and habitability. Many such investigations would benefit greatly from samples of Martian bedrock that are oriented in absolute Martian geographic coordinates. However, the Mars 2020 mission was designed without a requirement for orienting the samples. Here we describe a methodology that we developed for orienting rover drill cores in the Martian geographic frame and its application to Perseverance's first 20 rock samples. To orient the cores, three angles were measured: the azimuth and hade of the core pointing vector (i.e., vector oriented along the core axis) and the core roll (i.e., the solid body angle of rotation around the pointing vector). We estimated the core pointing vector from the attitude of the rover's Coring Drill during drilling. To orient the core roll, we used oriented images of asymmetric markings on the bedrock surface acquired with the rover's Wide Angle Topographic Sensor for Operations and eNgineering (WATSON) camera. For most samples, these markings were in the form of natural features on the outcrop, while for four samples they were artificial ablation pits produced by the rover's SuperCam laser. These cores are the first geographically‐oriented (<2.7° 3σ total uncertainty) bedrock samples from another planetary body. This will enable a diversity of paleomagnetic, sedimentological, igneous, tectonic, and astrobiological studies on the returned samples. Plain Language Summary The central goal of the Perseverance rover is to drill rock samples that can be brought back to Earth. Future laboratory studies of these samples could tell us about the history of Mars' climate, its interior structure and whether it was once habitable. These studies would greatly benefit from information about how the rock samples were oriented relative to Martian geographic coordinates. Here we show how we developed a technique to orient cores drilled by the rover and applied it to Perseverance's first 20 rock samples. Like all methods for orienting three‐dimensional objects, this required measuring three angles which are analogous to the pitch, yaw, and roll of a boat. We measured the the first two angles using the known orientation of the rover arm during drilling. We measured the third angle using rover photographs of markings on the rock face prior to drilling. These markings were either natural features on the outcrop or, for rock faces with no clear natural markings, an artificial L‐shaped pattern of pits produced by the rover's laser. These cores are the first geographically‐oriented samples of bedrock from another planet. This will enable a diversity of geological, geophysical, and paleontological studies on the samples in Earth laboratories. Key Points The Perseverance rover has acquired drill cores of Martian igneous and sedimentary bedrock for future potential return to Earth Using rover engineering data, we have oriented all rock cores in Martian geographic coordinates to better than 2.7° uncertainty Orientation enables future studies of the paleodirections associated with Martian magmatic, sedimentary, tectonic, and magnetic processes

CV-997, PI 615543, is a hard red spring wheat (HRSW) (Triticum aestivum L.) developed at North Dakota State University (NDSU) and released by the North Dakota Agricultural Experiment Station (NDAES) in July 2000. Alsen was released because it combines resistance to Fusarium head blight (FHB) [caused by Fusarium graminearum Schwabe (teleomorph Gibberella zeae (Schwein.) Fetch)], high grain yield, and excellent end-use quality for the domestic and export wheat markets.

Fusarium head blight (FHB), caused mainly by Fusarium graminearum Schwabe, is a destructive disease of wheat (Triticum spp.) in humid growth conditions throughout the world. Genetic resistance of the host plant is considered the most effective and sustainable method of defense against FHB; however, only limited sources of resistance are available in wheat. Relatives of wheat have proven to be an invaluable gene pool for wheat improvement. The objective of this study was to explore relatives of wheat for FHB resistance. We evaluated 293 lines derived from the crosses of wheat with its relatives for resistance to spread of FHB infection over two greenhouse seasons. Of these 293 derivatives, 66 were susceptible, 153 appeared moderately resistant, and 74 lines exhibited a level of resistance comparable with T. aestivum L. 'Sumai 3', the most widely used source of resistance to FHB. Alien species involved in development of these derivatives include T. tauschii (Coss.) Schmal., Roegneria kamoji C. Koch, R. ciliaris (Trin.) Nevski, Leymus racemosus Lam., Thinopyrum ponticum (Podp.) Barkworth & D.R. Dewey, Th. elongatum (Host) D.R. Dewey, Th. junceum (L.) Love, Th. intermedium (Host) Barkworth & D.R. Dewey, Dasypyrum villosa L., Secale cereale L., and oat (Avena sativa L.). The wheat-alien species derivatives identified as resistant to FHB include wheat-alien species amphiploids, synthetic hexaploid wheat lines, and wheat-alien species substitution and translocation lines. These derivatives could serve as novel sources to enhance resistance of wheat to FHB.

Durum wheat (Triticum turgidum L. subsp. durum) production in North America in recent years has been seriously threatened by epidemics of Fusarium head blight (FHB), caused mainly by Fusarium graminearum Schwabe [teleomorph Gibberella zeae (Schw.) Petch]. Deployment of FHB-resistant cultivars has been considered the most effective and cost-efficient strategy to combat this disease; however, progress in developing FHB-resistant durum wheat cultivars has been hindered by a lack of effective sources of resistance. The objective of this study is to identify tetraploid wheat germplasm that could be used to enhance FHB resistance in durum wheat. We evaluated FHB reactions in 376 accessions of five cultivated subspecies of T. turgidum, including Persian wheat [T. turgidum subsp. carthlicum (Nevski) Á. Löve and D. Löve], cultivated emmer wheat [T. turgidum subsp. dicoccum (Schrank ex Schübler) Thell.], Polish wheat [T. turgidum subsp. polonicum (L.) Thell.], Oriental wheat [T. turgidum subsp. turanicum (Jakubz.) Á. Löve and D. Löve], and Poulard wheat (T. turgidum L. subsp. turgidum). We used point inoculation to evaluate resistance to the spread of infection over three greenhouse seasons and used the grain inoculum method of inoculation to evaluate putatively resistant accessions in two field locations. Preliminary evaluation data showed that 16 T. turgidum subsp. carthlicum and 4 T. turgidum subsp. dicoccum accessions consistently exhibited resistance or moderate resistance to FHB. These accessions likely carry genetic resistance to FHB and could be used directly in breeding programs to enhance FHB resistance in durum wheat.