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result(s) for
"Tabrizian, Parissa"
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Mutations in circulating tumor DNA predict primary resistance to systemic therapies in advanced hepatocellular carcinoma
by
Sung, Max W.
,
Tabrizian, Parissa
,
Torres-Martin, Miguel
in
1-Phosphatidylinositol 3-kinase
,
631/67/69
,
692/53/2423
2021
Little is known about the mutational landscape of advanced hepatocellular carcinoma (HCC), and predictive biomarkers of response to systemic therapies are lacking. We aimed to describe the mutational landscape of advanced HCC and to identify predictors of primary resistance to systemic therapies using circulating tumor DNA (ctDNA). We prospectively enrolled 121 patients between October 2015 and January 2019. We performed targeted ultra-deep sequencing of 25 genes and Digital Droplet PCR of
TERT
promoter, including sequential samples throughout treatment. Primary endpoint was progression-free survival (PFS) stratified by mutation profiles in ctDNA. Secondary endpoints were overall survival and objective response rate. The most frequent mutations in ctDNA of advanced HCC were
TERT
promoter (51%),
TP53
(32%),
CTNNB1
(17%),
PTEN
(8%),
AXIN1, ARID2, KMT2D
, and
TSC2
(each 6%).
TP53
and
CTNNB1
mutations were mutually exclusive. Patients with mutations in the PI3K/MTOR pathway had significantly shorter PFS than those without these mutations after tyrosine kinase inhibitors (2.1 vs 3.7 months,
p
< 0.001), but not after immune checkpoint inhibition (CPI). WNT pathway mutations were not associated with PFS, overall survival, or objective response after CPI. Serial profiling of ctDNA in a subset correlated with treatment response. Mutation profiling of ctDNA in advanced HCC shows similar mutation frequencies for known HCC drivers compared to early stages and identifies predictive biomarkers of response to systemic therapies.
Journal Article
Targeting clinical epigenetic reprogramming for chemoprevention of metabolic and viral hepatocellular carcinoma
by
Pessaux, Patrick
,
Mukherji, Atish
,
Bock, Christoph
in
Animals
,
Carcinoma, Hepatocellular - etiology
,
Carcinoma, Hepatocellular - prevention & control
2021
ObjectiveHepatocellular carcinoma (HCC) is the fastest-growing cause of cancer-related mortality with chronic viral hepatitis and non-alcoholic steatohepatitis (NASH) as major aetiologies. Treatment options for HCC are unsatisfactory and chemopreventive approaches are absent. Chronic hepatitis C (CHC) results in epigenetic alterations driving HCC risk and persisting following cure. Here, we aimed to investigate epigenetic modifications as targets for liver cancer chemoprevention.DesignLiver tissues from patients with NASH and CHC were analysed by ChIP-Seq (H3K27ac) and RNA-Seq. The liver disease-specific epigenetic and transcriptional reprogramming in patients was modelled in a liver cell culture system. Perturbation studies combined with a targeted small molecule screen followed by in vivo and ex vivo validation were used to identify chromatin modifiers and readers for HCC chemoprevention.ResultsIn patients, CHC and NASH share similar epigenetic and transcriptomic modifications driving cancer risk. Using a cell-based system modelling epigenetic modifications in patients, we identified chromatin readers as targets to revert liver gene transcription driving clinical HCC risk. Proof-of-concept studies in a NASH-HCC mouse model showed that the pharmacological inhibition of chromatin reader bromodomain 4 inhibited liver disease progression and hepatocarcinogenesis by restoring transcriptional reprogramming of the genes that were epigenetically altered in patients.ConclusionOur results unravel the functional relevance of metabolic and virus-induced epigenetic alterations for pathogenesis of HCC development and identify chromatin readers as targets for chemoprevention in patients with chronic liver diseases.
Journal Article
A pilot study of ultra-deep targeted sequencing of plasma DNA identifies driver mutations in hepatocellular carcinoma
2018
Cellular components of solid tumors including DNA are released into the bloodstream, but data on circulating-free DNA (cfDNA) in hepatocellular carcinoma (HCC) are still scarce. This study aimed at analyzing mutations in cfDNA and their correlation with tissue mutations in patients with HCC. We included 8 HCC patients treated with surgical resection for whom we collected paired tissue and plasma/serum samples. We analyzed 45 specimens, including multiregional tumor tissue sampling (
n
= 24), peripheral blood mononuclear cells (PMBC,
n
= 8), plasma (
n
= 8) and serum (
n
= 5). Ultra-deep sequencing (5500× coverage) of all exons was performed in a targeted panel of 58 genes, including frequent HCC driver genes and druggable mutations. Mutations detected in plasma included known HCC oncogenes and tumor suppressors (e.g.,
TERT
promoter,
TP53
, and
NTRK3
) as well as a candidate druggable mutation (
JAK1
). This approach increased the detection rates previously reported for mutations in plasma of HCC patients. A thorough characterization of
cis
mutations found in plasma confirmed their tumoral origin, which provides definitive evidence of the release of HCC-derived DNA fragments into the bloodstream. This study demonstrates that ultra-deep sequencing of cfDNA is feasible and can confidently detect somatic mutations found in tissue; these data reinforce the role of plasma DNA as a promising minimally invasive tool to interrogate HCC genetics.
Journal Article
High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma
by
Tabrizian, Parissa
,
Sebra, Robert
,
Villanueva, Augusto
in
38/39
,
692/4028/67/1504/1610/4029
,
692/53/2421
2018
Patients with hepatocellular carcinoma (HCC) release tumor cells to the bloodstream, which can be detected using cell surface markers. Despite numerous reports suggest a direct correlation between the number of circulating tumor cells (CTCs) and poor clinical outcomes, few studies have provided a thorough molecular characterization of CTCs. Due to the limited access to tissue samples in patients at advanced stages of HCC, it is crucial to develop new technologies to identify HCC cancer drivers in routine clinical conditions. Here, we describe a method that sequentially combines image flow cytometry and high density single-cell mRNA sequencing to identify CTCs in HCC patients. Genome wide expression profiling of CTCs using this approach demonstrates CTC heterogeneity and helps detect known oncogenic drivers in HCC such as IGF2. This integrated approach provides a novel tool for biomarker development in HCC using liquid biopsy.
Journal Article
Consensus report from the 10th Global Forum for Liver Magnetic Resonance Imaging: developments in HCC management
by
Lee, Jeong Min
,
Song, Bin
,
Tabrizian, Parissa
in
Acids
,
Artificial Intelligence
,
Cancer screening
2023
The 10th Global Forum for Liver Magnetic Resonance Imaging (MRI) was held as a virtual 2-day meeting in October 2021, attended by delegates from North and South America, Asia, Australia, and Europe. Most delegates were radiologists with experience in liver MRI, with representation also from specialists in liver surgery, oncology, and hepatology.
Presentations, discussions, and working groups at the Forum focused on the following themes:
• Gadoxetic acid in clinical practice: Eastern and Western perspectives on current uses and challenges in hepatocellular carcinoma (HCC) screening/surveillance, diagnosis, and management
• Economics and outcomes of HCC imaging
• Radiomics, artificial intelligence (AI) and deep learning (DL) applications of MRI in HCC.
These themes are the subject of the current manuscript. A second manuscript discusses multidisciplinary tumor board perspectives: how to approach early-, mid-, and late-stage HCC management from the perspectives of a liver surgeon, interventional radiologist, and oncologist (Taouli et al, 2023).
Delegates voted on consensus statements that were developed by working groups on these meeting themes. A consensus was considered to be reached if at least 80% of the voting delegates agreed on the statements.
Clinical relevance statement
This review highlights the clinical applications of gadoxetic acid–enhanced MRI for liver cancer screening and diagnosis, as well as its cost-effectiveness and the applications of radiomics and AI in patients with liver cancer.
Key Points
• Interpretation of gadoxetic acid–enhanced MRI differs slightly between Eastern and Western guidelines, reflecting different regional requirements for sensitivity vs specificity.
• Emerging data are encouraging for the cost-effectiveness of gadoxetic acid–enhanced MRI in HCC screening and diagnosis, but more studies are required.
• Radiomics and artificial intelligence are likely, in the future, to contribute to the detection, staging, assessment of treatment response and prediction of prognosis of HCC—reducing the burden on radiologists and other specialists and supporting timely and targeted treatment for patients.
Journal Article
Outcomes assessment in intrahepatic cholangiocarcinoma using qualitative and quantitative imaging features
by
King, Michael J.
,
Tabrizian, Parissa
,
Omidele, Olamide
in
Abdomen
,
Bile duct cancer
,
Biliary tract cancer
2020
Background
To assess the performance of imaging features, including radiomics texture features, in predicting histopathologic tumor grade, AJCC stage, and outcomes [time to recurrence (TTR) and overall survival (OS)] in patients with intrahepatic cholangiocarcinoma (ICC).
Methods
Seventy-three patients (26 M/47F, mean age 63y) with pre-operative imaging (CT,
n
= 37; MRI,
n
= 21; CT and MRI,
n
= 15] within 6 months of resection were included in this retrospective study. Qualitative imaging traits were assessed by 2 observers. A 3rd observer measured tumor apparent diffusion coefficient (ADC), enhancement ratios (ERs), and Haralick texture features. Blood biomarkers and imaging features were compared with histopathology (tumor grade and AJCC stage) and outcomes (TTR and OS) using log-rank, generalized Wilcoxon, Cox proportional hazards regression, and Fisher exact tests.
Results
Median TTR and OS were 53.9 and 79.7 months. ICC recurred in 64.4% (47/73) of patients and 46.6% (34/73) of patients died. There was fair accuracy for some qualitative imaging features in the prediction of worse tumor grade (maximal AUC of 0.68 for biliary obstruction on MRI,
p
= 0.032, observer 1) and higher AJCC stage (maximal AUC of 0.73 for biliary obstruction on CT,
p
= 0.002, observer 2; and AUC of 0.73 for vascular involvement on MRI,
p
= 0.01, observer 2). Cox proportional hazards regression analysis showed that CA 19–9 [hazard ratio (HR) 2.44/95% confidence interval (CI) 1.31–4.57/
p
= 0.005)] and tumor size on imaging (HR 1.13/95% CI 1.04–1.22/
p
= 0.003) were significant predictors of TTR, while CA 19–9 (HR 4.08/95% CI 1.75–9.56,
p
= 0.001) and presence of metastatic lymph nodes at histopathology (HR 2.86/95% CI 1.35–6.07/
p
= 0.006) were significant predictors of OS. On multivariable analysis, satellite lesions on CT (HR 2.79/95%CI 1.01–7.15/
p
= 0.032, observer 2), vascular involvement on MRI (HR 0.10/95% CI 0.01–0.85/
p
= 0.032, observer 1), and texture feature MRI variance (HR 0.55/95% CI 0.31–0.97,
p
= 0.040) predicted TTR once adjusted for the independent predictors CA 19–9 and tumor size on imaging. Several qualitative and quantitative features demonstrated associations with TTR, OS, and AJCC stage at univariable analysis (range: HR 0.35–19;
p
< 0.001–0.045), however none were predictive of OS at multivariable analysis when adjusted for CA 19–9 and metastatic lymph nodes (
p
> 0.088).
Conclusions
There was reasonable accuracy in predicting tumor grade and higher AJCC stage in ICC utilizing certain qualitative and quantitative imaging traits. Serum CA 19–9, tumor size, presence of metastatic lymph nodes, and qualitative imaging traits of satellite lesions and vascular involvement are predictors of patient outcomes, along with a promising predictive ability of certain quantitative texture features.
Journal Article
Consensus report from the 10th global forum for liver magnetic resonance imaging: multidisciplinary team discussion
by
Lee, Jeong Min
,
Song, Bin
,
Tabrizian, Parissa
in
Carcinoma, Hepatocellular - diagnostic imaging
,
Carcinoma, Hepatocellular - pathology
,
Carcinoma, Hepatocellular - therapy
2023
The 10th Global Forum for Liver Magnetic Resonance Imaging was held in October 2021. The themes of the presentations and discussions at this Forum are described in detail in the review by Taouli et al (2023). The focus of this second manuscript developed from the Forum is on multidisciplinary tumor board perspectives in hepatocellular carcinoma (HCC) management: how to approach early-, mid-, and late-stage management from the perspectives of a liver surgeon, an interventional radiologist, and an oncologist. The manuscript also includes a panel discussion by multidisciplinary experts on three selected cases that explore challenging aspects of HCC management.
Clinical relevance statement
This review highlights the importance of a multidisciplinary team approach in liver cancer patients and includes the perspectives of a liver surgeon, an interventional radiologist, and an oncologist, including illustrative case studies.
Key Points
• A liver surgeon, interventional radiologist, and oncologist presented their perspectives on the treatment of early-, mid-, and late-stage HCC.
• Different perspectives on HCC management between specialties emphasize the importance of multidisciplinary tumor boards.
• A multidisciplinary faculty discussed challenging aspects of HCC management, as highlighted by three case studies.
Journal Article
Cholecystoduodenal fistula resulting in gallstone ileus: A path paved by stone
2021
This report showcases the initial management of gallstone ileus which includes proper biliary assessment to assist with operative planning. While an uncommon condition, surgical management is crucial, although methodology may be variable. This report showcases the initial management of gallstone ileus which includes proper biliary assessment to assist with operative planning. While an uncommon condition, surgical management is crucial, although methodology may be variable.
Journal Article