Explore the vast range of titles available.

Braarudosphaera bigelowii (Prymnesiophyceae) is a coastal coccolithophore with a long fossil record, extending back to the late Cretaceous (ca. 100 Ma). A recent study revealed close phylogenetic relationships between B. bigelowii, Chrysochromulina parkeae (Prymnesiophyceae), and a prymnesiophyte that forms a symbiotic association with the nitrogen-fixing cyanobacterium UCYN-A. In order to further examine these relationships, we conducted transmission electron microscopic and molecular phylogenetic studies of B. bigelowii. TEM studies showed that, in addition to organelles, such as the nucleus, chloroplasts and mitochondria, B. bigelowii contains one or two spheroid bodies with internal lamellae. In the 18S rDNA tree of the Prymnesiophyceae, C. parkeae fell within the B. bigelowii clade, and was close to B. bigelowii Genotype III (99.89% similarity). Plastid 16S rDNA sequences obtained from B. bigelowii were close to the unidentified sequences from the oligotrophic SE Pacific Ocean (e.g. HM133411) (99.86% similarity). Bacterial16S rDNA sequences obtained from B. bigelowii were identical to the UCYN-A sequence AY621693 from Arabian Sea, and fell in the UCYN-A clade. From these results, we suggest that; 1) C. parkeae is the alternate life cycle stage of B. bigelowii sensu stricto or that of a sibling species of B. bigelowii, and 2) the spheroid body of B. bigelowii originated from endosymbiosis of the nitrogen-fixing cyanobacterium UCYN-A.

Dinoflagellates are known to possess chloroplasts of multiple origins derived from a red alga, a green alga, haptophytes, or diatoms. The monophyletic “dinotoms” harbor a chloroplast of diatom origin, but their chloroplasts are polyphyletic belonging to one of four genera: Chaetoceros, Cyclotella, Discostella, or Nitzschia. It has been speculated that serial replacement of diatom-derived chloroplasts by other diatoms has caused this diversity of chloroplasts. Although previous work suggested that the endosymbionts of Nitzschia origin might not be monophyletic, this has not been seriously investigated. To infer the number of replacements of diatom-derived chloroplasts in dinotoms, we analyzed the phylogenetic affinities of 14 species of dinotoms based on the endosymbiotic rbcL gene and SSU rDNA, and the host SSU rDNA. Resultant phylogenetic trees revealed that six species of Nitzschia were taken up by eight marine dinoflagellate species. Our phylogenies also indicate that four separate diatom species belonging to three genera were incorporated into the five freshwater dinotoms. Particular attention was paid to two crucially closely related species, Durinskia capensis and a novel species, D. kwazulunatalensis, because they possess distantly related Nitzschia species. This study clarified that any of a total of at least 11 diatom species in five genera are employed as an endosymbiont by 14 dinotoms, which infers a more frequent replacement of endosymbionts in the world of dinotoms than previously envisaged.

A monophyletic group of dinoflagellates, called ‘dinotoms’, are known to possess evolutionarily intermediate plastids derived from diatoms. The diatoms maintain their nuclei, mitochondria, and the endoplasmic reticulum in addition with their plastids, while it has been observed that the host dinoflagellates retain the diatoms permanently by controlling diatom karyokinesis. Previously, we showed that dinotoms have repeatedly replaced their diatoms. Here, we show the process of replacements is at two different evolutionary stages in two closely related dinotoms, Durinskia capensis and D. kwazulunatalensis . We clarify that D. capensis is a kleptoplastic protist keeping its diatoms temporarily, only for two months. On the other hand, D. kwazulunatalensis is able to keep several diatoms permanently and exhibits unique dynamics to maintain the diatom nuclei: the nuclei change their morphologies into a complex string-shape alongside the plastids during interphase and these string-shaped nuclei then condense into multiple round nuclei when the host divides. These dynamics have been observed in other dinotoms that possess permanent diatoms, while they have never been observed in any other eukaryotes. We suggest that the establishment of this unique mechanism might be a critical step for dinotoms to be able to convert kleptoplastids into permanent plastids.

A new dinoflagellate, Paragymnodinium stigmaticum Yokouchi, Onuma & Horiguchi sp. nov., was described from sand samples collected at Sumiyoshi beach, Sado Island, Niigata Prefecture, Japan, based on observations at the light, scanning and transmission electron microscope levels together with molecular characterisation. The cells were 8.5-15.2 μm long and 6.3-12.4 μm wide. The episome and hyposome were subequal and hemispherical; although, the episome could also be conical. The cingulum was wide, well excavated and descended one quarter to a half of its own width. The sulcus was straight and widened slightly as it reached the antapex. A slightly curved sulcal extension-like furrow (SEF) ran from the right end of cingulum toward the apex. Cells possessed five to 10 yellowish brown chloroplasts, a red eyespot and small nematocysts. The dinoflagellate ingested prey cells despite the possession of chloroplasts, indicating a mixotrophic mode of nutrition. Paragymnodinium stigmaticum shared many morphological features and nutritional strategies with a known species of the genus Paragymnodinium, Paragymnodinium shiwhaense, including the possession of nematocysts, small polygonal amphiesmal vesicles and a mixotrophic mode of nutrition. However, it is clearly distinguished from P. shiwhaense by its feeding mechanism, its chloroplast ultrastructure, the presence of an eyespot, the absence of a plate-like structure in the amphiesmal vesicles and a benthic lifestyle (P. shiwhaense is planktonic). A phylogenetic analysis inferred from concatenated small and large subunit ribosomal DNA sequences recovered P. stigmaticum in a robust clade with P. shiwhaense that was included in the clade Gymnodinium sensu stricto. Therefore, it is reasonable to conclude that this dinoflagellate from Japan is a new species in the genus Paragymnodinium.

The ocelloid is an extraordinary eyespot organelle found only in the dinoflagellate family Warnowiaceae. It contains retina- and lens-like structures called the retinal body and the hyalosome. The ocelloid has been an evolutionary enigma because of its remarkable resemblance to the multicellular camera-type eye. To determine if the ocelloid is functionally photoreceptive, we investigated the warnowiid dinoflagellate Erythropsidinium. Here, we show that the morphology of the retinal body changed depending on different illumination conditions and the hyalosome manifests the refractile nature. Identifying a rhodopsin gene fragment in Erythropsidinium ESTs that is expressed in the retinal body by in situ hybridization, we also show that ocelloids are actually light sensitive photoreceptors. The rhodopsin gene identified is most closely related to bacterial rhodopsins. Taken together, we suggest that the ocelloid is an intracellular camera-type eye, which might be originated from endosymbiotic origin.

A new marine benthic dinoflagellate, Testudodinium magnum sp. nov., was described from a sand sample collected on the seafloor at a depth of 35 m off Mageshima Island, Kagoshima, Japan. The dinoflagellate possessed the characteristic features of the genus Testudodinium, but was distinguished by its extremely large size and pebbled dorsal surface of the hyposome, caused by the presence of numerous nodules. The cells of this dinoflagellate possessed a dominant sessile and a rare motile form that were morphologically distinct from each other: The sessile form was larger and the small rounded episome with longitudinal furrow was completely embedded in the hyposome; the motile form was smaller and the episome was only partly embedded in the hyposome. The ultrastructural investigations revealed the presence of a large, circular, starch-sheathed pyrenoid whose matrix was traversed by randomly arranged thylakoid lamellae. The chloroplasts formed a network radiating outward from the pyrenoid. Uniquely, this dinoflagellate possessed internal props - structures that spanned the thickness of the cell and were fibrous in nature. The props were numerous and passed through organelles and cell contents. Phylogenetic analyses based on the small-subunit ribosomal DNA gene sequences placed this dinoflagellate firmly within the Testudodinium clade with high support. On the basis of the morphological features and phylogenetic analyses, we concluded that this dinoflagellate was a new species in the genus Testudodinium.

Compared to planktonic species, there is little known about the ecology, physiology, and existence of benthic dinoflagellates living in sandy beach or seafloor environments. In a previous study, we discovered 13²,17³-cyclopheophorbide a enol (cPPB-aE) from sand-dwelling benthic dinoflagellates. This enol had never been detected in phytoplankton despite the fact that it is a chlorophyll a catabolite. We speculated from this discovery that habitat selection might be linked to pigment compositions in dinoflagellates. To test the hypothesis of habitat selection linking to pigment compositions, we conducted extensive analysis of pigments with high performance liquid chromatography (HPLC) for 40 species using 45 strains of dinoflagellates including three habitat types; sand-dwelling benthic forms, tidal pool inhabitants and planktonic species. The 40 dinoflagellates are also able to be distinguished into two types based on their chloroplast origins; red alga-derived secondary chloroplasts and diatom-derived tertiary ones. By plotting the pigments profiles onto three habitats, we noticed that twelve pigments including cPPB-aE were found to occur only in benthic sand-dwelling species of red alga-derived type. The similar tendency was also observed in dinoflagellates with diatom-derived chloroplasts, i.e. additional sixteen pigments including chl c ₃ were found only in sand-dwelling forms. This is the first report of the occurrence of chl c ₃ in dinoflagellates with diatom-derived chloroplasts. These results clarify that far greater diversity of pigments are produced by the dinoflagellates living in sand regardless of chloroplast types relative to those of planktonic and tidal pool forms. Dinoflagellates seem to produce a part of their pigments in response to their habitats.

In this study, we describe a novel marine gregarine parasite, Selenidium oshoroense n. sp., isolated from Hydroides ezoensis Okuda 1934 (Serpulidae, Polychaeta). Trophozoites (feeding stages) of S. oshoroense n. sp. were isolated from the gut of H. ezoensis collected from the intertidal shore near Oshoro, Hokkaido, Japan, and prepared for analysis with scanning and transmission electron microscopy (SEM and TEM), and molecular phylogenetic analysis using 18S rDNA. Trophozoites of S. oshoroense n. sp. were, on average, 120 μm long and 13 μm wide. Observation of the cells under SEM and TEM revealed 23 longitudinally running epicytic folds on the surface of the cells. Peduncles, multimembrane-bound whorls, and inclusions were also observed and were indicative of surface-mediated nutrition. Myzocytotic feeding at the apical end of the cell was also indicated in sections of host gut tissue that were viewed under TEM, suggesting that myzocytosis could be a shared feature among this clade of Selenidium from tube-forming polychaetes. Molecular phylogenetic analysis of the 18S rDNA grouped S. oshoroense n. sp. within a clade of Selenidium from tube-forming polychaetes, sister to S. serpulae . The two 18S rDNA sequences generated from separate isolates of S. oshoroense n. sp. had a similarity of 0.997, but were 0.965 and 0.966 similar to S. serpulae. S. oshoroense n. sp. was differentiated from, S. serpulae , based on the absence of transverse striations on the surface of the epicytic folds and difference in ecological niche (host). Morphological differences were supported in phylogenetic analysis which grouped S. oshoroense n. sp. isolates, to the exclusion of S. serpulae .

Nusuttodinium spp. use ingested cryptomonad chloroplasts as kleptochloroplasts but form a sister group to Spiniferodinium spp., which are typical photosynthetic dinoflagellates. Our survey of the diversity of Nusuttodinium-related dinoflagellates resulted in the discovery of two colourless dinoflagellates, referred to as DAI (dinoflagellate collected from Aininkappu) and DIS (dinoflagellate collected from Ishikari). Cells of DAI possess a right-handed cingulum, an apical groove connecting with the sulcal extension at a right angle and nuclear chambers. Cells of DIS have a projection on their epicone encircled by a counterclockwise-directed apical groove and lack nuclear chambers. Cells of DAI digest cryptomonads directly, and DIS never ingests cryptomonads, making both species nonkleptochloroplastidic. Phylogenetic analyses showed that DIS is a member of the Nusuttodinium clade; whereas, DAI is a sister of the clade, and the photosynthetic genus Spiniferodinium is positioned at the base of these dinoflagellates. Based on a unique combination of features, including a unique shape to the apical groove, a right-handed cingulum, nuclear chambers and lack of a chloroplast, we describe DAI as Pellucidodinium psammophilum gen. & sp. nov. Based on a projection on the epicone, a counterclockwise-directed apical groove and the lack of nuclear chambers, we describe DIS as Nusuttodinium desymbiontum sp. nov. despite its inability to display kleptochloroplastidy. The phylogenetic position of P. psammophilum, together with its shared presence of nuclear chambers with Spiniferodinium, implies that it represents an evolutionary intermediate prior to the acquisition of kleptochloroplastidy; N. desymbiontum appears to have lost this competence secondarily.

A new species of the dinoflagellate genus Bysmatrum was isolated from tidal pool samples originating from Cape Peninsula, South Africa. This new species was investigated by light, scanning and transmission electron microscopy, and its phylogenetic affinities were analyzed using molecular data. Cells were pentagonal in ventral view, 25-45 μm long and 20-42.5 μm wide and only slightly flattened in a dorsiventral plane. The epitheca, in apical view, was almost circular, with a slight ventral depression. Plate tabulation (P O , X, 4′, 3a, 7″, 6c, 4s, 5′′′, 2′′′′) was typical for the genus Bysmatrum. Apical plate 1′ was heptagonal and broadly asymmetric, with an elongated, fingerlike extension at the base. The intercalary plates 2a and 3a were separated by a direct connection between plates 3′ and 4″. The thecal plates were perforated by pores of different sizes and ornamented with linearly arranged reticulations. Intercalary bands were smooth, and antapical plates were not indented. This new species differs from the five other known species of the genus Bysmatrum in morphology (e.g. the shape of apical plate 1′) and it occupies an isolated position in phylogenetic trees inferred by analyses of small-subunit ribosomal DNA (SSU-rDNA) sequence data. This also represents the first report of the SSU rDNA sequence for Bysmatrum arenicola.