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UV radiation (UVR) is a significant ecological factor in the marine environment that can have important effects on planktonic organisms and dissolved organic matter (DOM). The penetration of UVR into the water column is likely to change in the near future due to interactions between global warming and ozone depletion. In this study we report underwater instruments employed for the measurement of UVR and we review data dealing with the depth of UVR penetration in different oceanic areas including the open ocean, Antarctic waters and coastal waters. We provide the 10% irradiance depth (Z10%) for UV-A and UV-B as well as for DNA damage effective dose (DNA), which we calculated from the values of diffuse attenuation coefficients or vertical profiles reported in the literature. We observe a clear distinction between open ocean (high Z10%, no variation in the ratio UV-B/UV-A), Antarctic waters (increase in the ratio UV-B/UV-A during ozone hole conditions) and coastal waters (low Z10%, no variation in the ratio UV-B/UV-A). These variations in the penetration of UVR could lead to differences in the relative importance of photobiological/photochemical processes. We also compare in this study the penetration of UV-B (unweighted and weighted by the Setlow action spectrum) and DNA damage effective dose.

The photosynthetic cyanobacterium Trichodesmium is widely distributed in the surface low latitude ocean where it contributes significantly to N 2 fixation and primary productivity. Previous studies found nifH genes and intact Trichodesmium colonies in the sunlight-deprived meso- and bathypelagic layers of the ocean (200–4000 m depth). Yet, the ability of Trichodesmium to fix N 2 in the dark ocean has not been explored. We performed 15 N 2 incubations in sediment traps at 170, 270 and 1000 m at two locations in the South Pacific. Sinking Trichodesmium colonies fixed N 2 at similar rates than previously observed in the surface ocean (36–214 fmol N cell −1 d −1 ). This activity accounted for 40 ± 28% of the bulk N 2 fixation rates measured in the traps, indicating that other diazotrophs were also active in the mesopelagic zone. Accordingly, cDNA nifH amplicon sequencing revealed that while Trichodesmium accounted for most of the expressed nifH genes in the traps, other diazotrophs such as Chlorobium and Deltaproteobacteria were also active. Laboratory experiments simulating mesopelagic conditions confirmed that increasing hydrostatic pressure and decreasing temperature reduced but did not completely inhibit N 2 fixation in Trichodesmium . Finally, using a cell metabolism model we predict that Trichodesmium uses photosynthesis-derived stored carbon to sustain N 2 fixation while sinking into the mesopelagic. We conclude that sinking Trichodesmium provides ammonium, dissolved organic matter and biomass to mesopelagic prokaryotes.

We investigated the influence of freshwater discharges on biogeochemistry and benthic communities of La Saline fringing reef, the largest coral reef system of La Réunion Island (France, Indian Ocean). Sampling was conducted in February-March 2012 along a land-ocean continuum, including rivers, groundwater, reef waters and oceanic waters. Our results indicated the discharges of basalt groundwater (enriched in nitrates) in the southern part of the reef, and the discharges of sand groundwater and river waters (enriched in organic matter) in sites located northward. These discharges mainly impacted fore reef surface waters, while groundwater resurgences were more diffuse and not clearly detected in depth. We highlighted the relationship Si(OH)4/NO3- to identify basalt groundwater discharges. We also put forward the relationships humic-like fluorescence/NH4+ and tryptophan-like fluorescence/PO43- to identify sand groundwater discharges and wastewater pollutions, respectively. We observed the eutrophication of the southern part of the reef through higher phytoplankton biomasses, a massive presence of fleshy algal formations and a low coral coverage. The spatial homogeneity of the benthic community structures onto the entire slope contrasted with the spatial heterogeneity of chemical variables in water. This reflected the different spatial and temporal scales involved in biological and chemical processes in coral reef ecosystems.

Iron (Fe) is an essential micronutrient for phytoplankton growth, but its scarcity in seawater limits primary productivity across much of the ocean. Most dissolved Fe (DFe) in seawater is complexed with Fe-binding organic ligands, a poorly constrained fraction of dissolved organic matter (DOM), which increase Fe residence time and impact Fe bioavailability. Here, we present the conditional concentration (L Fe ) and binding-strength (log K F e ' L c o n d ) of Fe-binding ligands in the Western Tropical South Pacific (WTSP) Ocean during the GEOTRACES TONGA cruise (GPpr14). The transect crossed the Lau basin, a region subject to shallow hydrothermal Fe inputs that fuel intense diazotrophic activity, the oligotrophic South Pacific gyre, and the Melanesian basin. Organic speciation was analyzed by competitive ligand exchange adsorptive cathodic stripping voltammetry (CLE-AdCSV) using salicylaldoxime at 25 µM. We found a high mean L Fe of 5.2 ± 1.2 nMeqFe (n = 103) across the entire transect, predominantly consisting of intermediate strength L2 ligands (84%; mean log K F e ' L c o n d of 11.6 ± 0.4), consistent with humic-like substances. DFe correlated with the humic-like component of the fluorescent DOM (HS-like FDOM), yet the electroactive Fe-binding humic-like substances (L FeHS ) accounted for only 20 ± 13% of L Fe in the mixed layer and 8 ± 6% in deep waters. Ligands were in large excess compared to DFe (mean excess ligand eL Fe = 4.6 ± 1.1 nMeqFe), suggesting poor stabilization of DFe inputs. High L Fe (up to 9 nMeqFe) in samples close to hydrothermal sites could be due to detoxification strategies from plankton communities toward hydrothermally-fueled toxic trace metals other than Fe, with an apparent dilution of the DOM from the Lau basin into neighboring regions. We also observed a different peak potential of the Fe salicylaldoxime complex detected by CLE-AdCSV between the Lau and Melanesian basins, and between surface and deep waters. To our knowledge, this change in potential has not previously been reported; whether this represents a novel detection of specificities in DOM composition merits further investigation. Competition between Fe and competing metals for ligand binding sites could favor DFe oxidation and precipitation near hydrothermal vents and explain the absence of strong Fe stabilization in the WTSP.

This study presents the MiniFluo-UV, an ocean glider-compatible fluorescence sensor that targets the detection of polycyclic aromatic hydrocarbons (PAHs) in the marine environment. Two MiniFluos can be installed on a glider, each equipped with two optical channels (one PAH is measured per channel). This setup allows the measurement of up to 4 different fluorescent PAHs: Naphthalene, Phenanthrene, Fluorene and Pyrene. Laboratory tests on oil products (Maya crude oil and Diesel fuel) as well as on marine samples near industrial areas (urban harbor and offshore installations) revealed that the concentration of the four PAHs targeted accounted for 62-97\\% of the total PAH concentration found in samples ( $\\sum$ 16 PAHs determined by standard international protocols). Laboratory tests also revealed that for marine applications, the calibration on Water Accommodated Fraction (WAF) of crude oil is more appropriate than the one on pure standards (STD). This is because PAH fluorescence is constituted in large part of alkylated compounds that are not considered with STD calibration. Results from three glider deployments with increasing levels of complexity (a laboratory trial, a field mission in non-autonomous mode and a fully autonomous mission) are also presented. During field deployments, the MiniFluo-glider package was able to detect concentration gradients from offshore marine waters towards the head of a Mediterranean harbor ( $\\rm <80\\,ng\\,L^{-1}$ ) as well as hydrocarbon patches at the surface waters of an oil and gas exploitation field in the North Sea ( $\\rm <200\\,ng\\,L^{-1}$ , mainly Naphthalene). It is suggested that using only the WAF calibration, the concentration derived with the MiniFluo agrees within one order of magnitude with the concentration determined by Gas Chromatography coupled with Mass Spectrometry (overestimation by a factor 7 on average). These performances can be improved if the calibration is made with a WAF with PAH proportions similar to the one find in the environment. Finally, it is shown that the use of in situ calibration on water samples collected during the glider deployment, when possible, gives the best results.

In the Western Tropical South Pacific (WTSP) Ocean, a hotspot of dinitrogen fixation has been identified. The survival of diazotrophs depends, among others, on the availability of dissolved iron (DFe) largely originating, as recently revealed, from shallow hydrothermal sources located along the Tonga-Kermadec arc that fertilize the Lau Basin with this element. On the opposite, these fluids, released directly close to the photic layer, can introduce numerous trace metals at concentrations that can be toxic to surface communities. Here, we performed an innovative 9-day experiment in 300 L reactors onboard the TONGA expedition, to examine the effects of hydrothermal fluids on natural plankton communities in the WTSP Ocean. Different volumes of fluids were mixed with non-hydrothermally influenced surface waters (mixing ratio from 0 to 14.5%) and the response of the communities was studied by monitoring numerous stocks and fluxes (phytoplankton biomass, community composition, net community production, N 2 fixation, thiol production, organic carbon and metal concentrations in exported material). Despite an initial toxic effect of hydrothermal fluids on phytoplankton communities, these inputs led to higher net community production and N 2 fixation rates, as well as elevated export of organic matter relative to control. This fertilizing effect was achieved through detoxification of the environment, rich in potentially toxic elements (e.g., Cu, Cd, Hg), likely by resistant Synechococcus ecotypes able to produce strong binding ligands, especially thiols (thioacetamide-like and glutathione-like compounds). The striking increase of thiols quickly after fluid addition likely detoxified the environment, rendering it more favorable for phytoplankton growth. Indeed, phytoplankton groups stressed by the addition of fluids were then able to recover important growth rates, probably favored by the supply of numerous fertilizing trace metals (notably Fe) from hydrothermal fluids and new nitrogen provided by N 2 fixation. These experimental results are in good agreement with in-situ observations, proving the causal link between the supply of hydrothermal fluids emitted at shallow depth into the surface layer and the intense biological productivity largely supported by diazotrophs in the WTSP Ocean. This study highlights the importance of considering shallow hydrothermal systems for a better understanding of the biological carbon pump.

Settling particles were collected from the Ligurian Sea in the northwestern Mediterranean Sea in May 2003 and separated by elutriation into different settling velocity classes (>230, 115-230, 58-115, and $<58 m d^{-1}$). Particles of the different classes were incubated for 5 d to study their biodegradability. Particulate opal content and organic compound composition (amino acids, pigments, lipids, and carbohydrates) were analyzed initially and at regular time intervals during the incubation period. Most particles (48-67% of total mass) sank at greater than $230 m d^{-1}$ and were dominated by large diatom-derived aggregates produced during the spring bloom period. The initial organic composition and the biological lability of these particles varied with settling velocity. The strong phytoplankton signal was visible in all settling velocity classes, while slower settling particles carried with them a greater zooplankton and bacterial signature. As the different class particles decomposed, their compositions changed and became more similar with time, with a dominance of compounds that suggests a more degraded state: the amino acids $\\gamma-aminobutyric$ acid and $\\beta-alanine$, the pigments pyropheophorbide and pheophytin, the deoxysugars fucose and rhamnose, and lipid metabolites (diglycerides and monoglycerides, alcohols, and free fatty acids). Biogenic opal in the particles dissolved faster in more degraded particles than in fresher particles, suggesting that loss of organic matter may expose opal to dissolution. The coupling of settling velocity and decomposition rate measurements shows quantitatively that slower settling particles are quickly degraded and faster settling particles retain their original biological signal to a greater degree. Greater preservation of faster settling particles testifies to the importance of these particles as food resources for bathypelaeic and surface sediment communities.

The MiniFluo-UV is a new glider-compatible optical sensor for measurements of dissolved organic matter (DOM) in natural waters. The working principle, sensor design and challenges faced during the validation phase are reported. The first in situ application of the sensor during three glider deployments in the NW Mediterranean sea (spring, summer and fall) are also presented. For these campaigns, the two channels of the sensor were adjusted to target Tryptophan-like (excitation/emission wavelengths: 275/340 nm) and Phenanthrene-like (255/360 nm) fluorescence. These were chosen because they represent fluorophores of interest commonly found in seawater. While Tryptophan (an amino-acid believed to be a by-product of biological activity) is naturally found in the ocean, Phenanthrene (a polycyclic aromatic hydrocarbon) is mainly introduced in the environment via human activities. The addition of these variables to more common physical and biogeochemical glider measurements reveals new features of DOM dynamics in the Mediterranean Sea. For example, the temporal and spatial decoupling between Tryptophan-like and Chl- $a$fluorescence suggests that the former is not only a marker of biological activity, but could also give more subtle information on the microbial processes occurring. The identification of a Phenanthrene-like layer just below the pycnocline at all seasons also raises questions on the mechanisms driving its presence in the Mediterranean. Knowing that the role of ocean DOM on atmospheric carbon sequestration is becoming clearer, the high spatio-temporal resolution possible with this new sampling strategy may represents a key step towards our deep understanding of DOM dynamics and its role on the biological pump.

The study of copepod assemblages indicated the presence of 22 species and 12 families in the southern coast of Sfax, 20 species and 13 families in the northern coast and 14 species and 8 families in the Ghannouch area, with a dominance of Oithonidae (79, 51 and 43% in the southern, northern and Ghannouch coasts, respectively). The relative abundance and the richness diversity of Oithonidae were found to be the most relevant indicators of anthropogenic pollution. Oithona nana, Euterpina acutifrons and Acartia clausi differed significantly in abundance between these three areas under differing degrees of pollution. The study of the structure, composition and density of the copepod fauna showed that the southern coast was a pollution-resistant ecosystem (H′ = 1.49 ± 0.33 bits ind−1; 22 species; density = 51.375 ± 4.340 × 103 ind m−3) followed by Ghannouch area (H′ = 1.74 ± 0.28 bits ind−1; 15 species; density = 11.979 ± 5.651 × 103 ind m−3) and the northern coast, considered as a restored area (H′ = 1.95 ± 0.26 bits ind−1; 21 species; density = 6.516 ± 4.304 × 103 ind m−3). The three ecosystems can thus be classified according to their degree of resistance to the anthropogenic inputs based on the results of the physico-chemical parameters and the species diversity as follows: southern coast > Ghannouch area > northern coast.

Model simulations and remote sensing observations show that ocean dynamics at fine scales (1–100 km in space, day–weeks in time) strongly influence the distribution of phytoplankton. However, only a few in situ-based studies at fine scales have been performed, and most of them concern western boundary currents which may not be representative of less energetic regions. The PROTEVSMED-SWOT cruise took place in the moderately energetic waters of the western Mediterranean Sea (WMS), in the region south of the Balearic Islands. Taking advantage of near-real-time satellite information, we defined a sampling strategy in order to cross a frontal zone separating different water masses. Multi-parametric in situ sensors mounted on the research vessel, on a towed vehicle and on an ocean glider were used to sample physical and biogeochemical variables at a high spatial resolution. Particular attention was given to adapting the sampling route in order to estimate the vertical velocities in the frontal area also. This strategy was successful in sampling quasi-synoptically an oceanic area characterized by the presence of a narrow front with an associated vertical circulation. A multiparametric statistical analysis of the collected data identifies two water masses characterized by different abundances of several phytoplankton cytometric functional groups, as well as different concentrations of chlorophyll a and O2. Here, we focus on moderately energetic fronts induced by fine-scale circulation. Moreover, we explore physical–biological coupling in an oligotrophic region. Our results show that the fronts induced by the fine-scale circulation, even if weaker than the fronts occurring in energetic and nutrient-rich boundary current systems, maintain nevertheless a strong structuring effect on the phytoplankton community by segregating different groups at the surface. Since oligotrophic and moderately energetic regions are representative of a very large part of the world ocean, our results may have global significance when extrapolated.