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result(s) for
"Thomson, A M"
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The Pandora software development kit for pattern recognition
2015
The development of automated solutions to pattern recognition problems is important in many areas of scientific research and human endeavour. This paper describes the implementation of the Pandora software development kit, which aids the process of designing, implementing and running pattern recognition algorithms. The Pandora Application Programming Interfaces ensure simple specification of the building-blocks defining a pattern recognition problem. The logic required to solve the problem is implemented in algorithms. The algorithms request operations to create or modify data structures and the operations are performed by the Pandora framework. This design promotes an approach using many decoupled algorithms, each addressing specific topologies. Details of algorithms addressing two pattern recognition problems in High Energy Physics are presented: reconstruction of events at a high-energy
e
+
e
-
linear collider and reconstruction of cosmic ray or neutrino events in a liquid argon time projection chamber.
Journal Article
Climate Impacts on Agriculture: Implications for Crop Production
by
Hatfield, J.L
,
Izaurralde, R.C
,
Boote, K.J
in
09 BIOMASS FUELS
,
AGRICULTURE
,
Agronomy. Soil science and plant productions
2011
Changes in temperature, CO2, and precipitation under the scenarios of climate change for the next 30 yr present a challenge to crop production. This review focuses on the impact of temperature, CO2, and ozone on agronomic crops and the implications for crop production. Understanding these implications for agricultural crops is critical for developing cropping systems resilient to stresses induced by climate change. There is variation among crops in their response to CO2, temperature, and precipitation changes and, with the regional differences in predicted climate, a situation is created in which the responses will be further complicated. For example, the temperature effects on soybean [Glycine max (L.) Merr.] could potentially cause yield reductions of 2.4% in the South but an increase of 1.7% in the Midwest. The frequency of years when temperatures exceed thresholds for damage during critical growth stages is likely to increase for some crops and regions. The increase in CO2 contributes significantly to enhanced plant growth and improved water use efficiency (WUE); however, there may be a downscaling of these positive impacts due to higher temperatures plants will experience during their growth cycle. A challenge is to understand the interactions of the changing climatic parameters because of the interactions among temperature, CO2, and precipitation on plant growth and development and also on the biotic stresses of weeds, insects, and diseases. Agronomists will have to consider the variations in temperature and precipitation as part of the production system if they are to ensure the food security required by an ever increasing population.
Journal Article
Impact of blood flow restriction training timing: Does exercising at dusk or dawn enhance response?
by
Peskett, L. E.
,
Nancekievill, D.
,
Thomson, A. M.
in
Adult
,
Blood flow
,
blood flow restriction
2025
Data suggest that skeletal muscles have an internal clock that dictates training‐related adaptations, which could generate different health benefits in response to exercise timing. However, limited data exist on the impact of blood flow restriction (BFR) training timing on health outcomes. To investigate the impact of 6 weeks of BFR training performed at different times of day on body composition, performance measures, and irisin and PGC1‐α4 expression. Participants (n = 31; aged 19–30) who performed 6 weeks of BFR resistance training were categorized into morning (n = 16; 05:00–11:00) or afternoon (n = 15; 11:00–17:00) groups. A sub‐analysis of responders and non‐responders (top and bottom 25% of muscle strength or lean mass change) was performed. Primary outcomes were changes in body composition, muscle strength, isokinetic measures, and irisin and PGC1‐α4 expression. Time effects were observed for changes in lean mass (p < 0.001), relative lean mass (p < 0.001), body fat percentage (p = 0.02), and all performance measures (ps ≤ 0.015). A negative correlation was observed between lean mass change and irisin change (r = −0.18; p = 0.57). No group or time × group interactions were reported for any outcomes. Six weeks of BFR training provided improvements in body composition and performance outcomes and no changes in irisin and PGC1‐α4 irrespective of timing.
Journal Article
Sex-specific association between bipolar affective disorder in women and GPR50, an X-linked orphan G protein-coupled receptor
by
Grassie, M A
,
Muir, W
,
Wray, N R
in
Adult
,
Adult and adolescent clinical studies
,
Behavioral Sciences
2005
GPR50
is an orphan G protein-coupled receptor (GPCR) located on Xq28, a region previously implicated in multiple genetic studies of bipolar affective disorder (BPAD). Allele frequencies of three polymorphisms in
GPR50
were compared in case–control studies between subjects with BPAD (264), major depressive disorder (MDD) (226), or schizophrenia (SCZ) (263) and ethnically matched controls (562). Significant associations were found between an insertion/deletion polymorphism in exon 2 and both BPAD (
P
=0.0070), and MDD (
P
=0.011) with increased risk associated with the deletion variant (
GPR50
Δ502–505
). When the analysis was restricted to female subjects, the associations with BPAD and MDD increased in significance (
P
=0.00023 and
P
=0.0064, respectively). Two other single-nucleotide polymorphisms (SNPs) tested within this gene showed associations between: the female MDD group and an SNP in exon 2 (
P
=0.0096); and female SCZ and an intronic SNP (
P
=0.0014). No association was detected in males with either MDD, BPAD or SCZ. These results suggest that
GPR50
Δ502–505
, or a variant in tight linkage disequilibrium with this polymorphism, is a sex-specific risk factor for susceptibility to bipolar disorder, and that other variants in the gene may be sex-specific risk factors in the development of schizophrenia.
Journal Article
Climate Impacts on Agriculture: Implications for Forage and Rangeland Production
by
Hatfield, J.L
,
Polley, H.W
,
Izaurralde, R.C
in
ACCELERATION
,
AGRICULTURE
,
Agronomy. Soil science and plant productions
2011
Projections of temperature and precipitation patterns across the United States during the next 50 yr anticipate a 1.5 to 2°C warming and a slight increase in precipitation as a result of global climate change. There have been relatively few studies of climate change effects on pasture and rangeland (grazingland) species compared to those on crop species, despite the economic and ecological importance of the former. Here we review the literature on responses of pastureland and rangeland species to rising atmospheric CO2 and climate change (temperature and precipitation) and discuss plant and management factors likely to influence pastureland and rangeland responses to change (e.g., community composition, plant competition, perennial growth habit, seasonal productivity, and management methods). Overall, the response of pastureland and rangeland species to increased [CO2] is consistent with the general responses of C3 and C4 vegetation, although exceptions exist. Both pastureland and rangeland species may experience accelerated metabolism and advanced development with rising temperature, often resulting in a longer growing season. However, soil resources will often constrain temperature effects. In general, it is expected that increases in [CO2] and precipitation will enhance rangeland net primary production (NPP) whereas increased air temperatures will either increase or decrease NPP. Much of the uncertainty in predicting how pastureland and rangeland species will respond to climate change is due to uncertainty in future projections of precipitation, both globally and regionally. This review reveals the need for comprehensive studies of climate change impacts on pastureland and rangeland ecosystems that include an assessment of the mediating effects of grazing regimes and mutualistic relationships (e.g., plant roots-nematodes; N-fixing organisms) as well as changes in water, carbon, and nutrient cycling.
Journal Article
The integrated Earth system model version 1: formulation and functionality
by
Collins, W D
,
Thomson, A M
,
Hurtt, G C
in
21st century
,
Anthropogenic climate changes
,
Anthropogenic factors
2015
The integrated Earth system model (iESM) has been developed as a new tool for projecting the joint human/climate system. The iESM is based upon coupling an integrated assessment model (IAM) and an Earth system model (ESM) into a common modeling infrastructure. IAMs are the primary tool for describing the human–Earth system, including the sources of global greenhouse gases (GHGs) and short-lived species (SLS), land use and land cover change (LULCC), and other resource-related drivers of anthropogenic climate change. ESMs are the primary scientific tools for examining the physical, chemical, and biogeochemical impacts of human-induced changes to the climate system. The iESM project integrates the economic and human-dimension modeling of an IAM and a fully coupled ESM within a single simulation system while maintaining the separability of each model if needed. Both IAM and ESM codes are developed and used by large communities and have been extensively applied in recent national and international climate assessments. By introducing heretofore-omitted feedbacks between natural and societal drivers, we can improve scientific understanding of the human–Earth system dynamics. Potential applications include studies of the interactions and feedbacks leading to the timing, scale, and geographic distribution of emissions trajectories and other human influences, corresponding climate effects, and the subsequent impacts of a changing climate on human and natural systems. This paper describes the formulation, requirements, implementation, testing, and resulting functionality of the first version of the iESM released to the global climate community.
Journal Article
Polyethylene glycol 3350 plus electrolytes for chronic constipation in children: a double blind, placebo controlled, crossover study
by
Thomson, M A
,
Bisset, W M
,
Kalra, D S
in
Biological and medical sciences
,
Care and treatment
,
Cathartics - therapeutic use
2007
Objectives: To assess the efficacy and safety of polyethylene glycol 3350 plus electrolytes (PEG+E) for the treatment of chronic constipation in children. Design: Randomised, double blind, placebo controlled crossover trial, with two 2-week treatment periods separated by a 2-week placebo washout. Setting: Six UK paediatric departments. Participants: 51 children (29 girls, 22 boys) aged 24 months to 11 years with chronic constipation (lasting ⩾3 months), defined as ⩽2 complete bowel movements per week and one of the following: pain on defaecation on 25% of days; ⩾25% of bowel movements with straining; ⩾25% of bowel movements with hard/lumpy stools. 47 children completed the double blind treatment. Main outcome measures: Number of complete defaecations per week (primary efficacy variable), total number of complete and incomplete defaecations per week, pain on defaecation, straining on defaecation, faecal incontinence, stool consistency, global assessment of treatment, adverse events and physical examination. Results: The mean number of complete defaecations per week was significantly higher for children on PEG+E than on placebo (3.12 (SD 2.05) v 1.45 (SD 1.20), respectively; p<0.001). Further significant differences in favour of PEG+E were observed for total number of defaecations per week (p = 0.003), pain on defaecation (p = 0.041), straining on defaecation (p<0.001), stool consistency (p<0.001) and percentage of hard stools (p = 0.001). Treatment related adverse events (all mild or moderate) occurred in similar numbers of children on PEG+E (41%) and placebo during treatment (45%). Conclusions: PEG+E is significantly more effective than placebo, and appears to be safe and well tolerated in the treatment of chronic constipation in children.
Journal Article
Model-independent measurement of the e+e-→ HZ cross section at a future e+e- linear collider using hadronic Z decays
2016
A future
e
+
e
-
collider, such as the ILC or CLIC, would allow the Higgs sector to be probed with a precision significantly beyond that achievable at the High-Luminosity LHC. A central part of the Higgs programme at an
e
+
e
-
collider is the model-independent determination of the absolute Higgs couplings to fermions and to gauge bosons. Here the measurement of the
e
+
e
-
→
H
Z
Higgsstrahlung cross section, using the recoil mass technique, sets the absolute scale for all Higgs coupling measurements. Previous studies have considered
σ
(
e
+
e
-
→
H
Z
)
with
Z
→
ℓ
+
ℓ
-
, where
ℓ
=
e
,
μ
. In this paper it is shown for the first time that a near model-independent recoil mass technique can be extended to the hadronic decays of the
Z
boson. Because the branching ratio for
Z
→
q
q
¯
is approximately ten times greater than for
Z
→
ℓ
+
ℓ
-
, this method is statistically more powerful than using the leptonic decays. For an integrated luminosity of 500
fb
-
1
at a centre-of-mass energy of
s
=
350
GeV
at CLIC,
σ
(
e
+
e
-
→
H
Z
)
can be measured to
±
1.8
%
using the hadronic recoil mass technique. A similar precision is found for the ILC operating at
s
=
350
GeV
. The centre-of-mass dependence of this measurement technique is discussed, arguing for the initial operation of a future linear collider at just above the top-pair production threshold.
Journal Article
Sensitivity of climate mitigation strategies to natural disturbances
2013
The present and future concentration of atmospheric carbon dioxide depends on both anthropogenic and natural sources and sinks of carbon. Most proposed climate mitigation strategies rely on a progressive transition to carbon-efficient technologies to reduce industrial emissions, substantially supported by policies to maintain or enhance the terrestrial carbon stock in forests and other ecosystems. This strategy may be challenged if terrestrial sequestration capacity is affected by future climate feedbacks, but how and to what extent is little understood. Here, we show that climate mitigation strategies are highly sensitive to future natural disturbance rates (e.g. fires, hurricanes, droughts), because of the potential effect of disturbances on the terrestrial carbon balance. Generally, altered disturbance rates affect the pace of societal and technological transitions required to achieve the mitigation target, with substantial consequences on the energy sector and the global economy. An understanding of the future dynamics and consequences of natural disturbances on terrestrial carbon balance is thus essential for developing robust climate mitigation strategies and policies.
Journal Article
Ileal-lymphoid-nodular hyperplasia, non-specific colitis, and pervasive developmental disorder in children
by
CASSON, D. M
,
MURCH, S. H
,
WALKER-SMITH, J. A
in
Barium
,
Biological and medical sciences
,
Child
1998
We investigated a consecutive series of children with chronic enterocolitis and regressive developmental disorder.
12 children (mean age 6 years [range 3-10], 11 boys) were referred to a paediatric gastroenterology unit with a history of normal development followed by loss of acquired skills, including language, together with diarrhoea and abdominal pain. Children underwent gastroenterological, neurological, and developmental assessment and review of developmental records. Ileocolonoscopy and biopsy sampling, magnetic-resonance imaging (MRI), electroencephalography (EEG), and lumbar puncture were done under sedation. Barium follow-through radiography was done where possible. Biochemical, haematological, and immunological profiles were examined.
Onset of behavioural symptoms was associated, by the parents, with measles, mumps, and rubella vaccination in eight of the 12 children, with measles infection in one child, and otitis media in another. All 12 children had intestinal abnormalities, ranging from lymphoid nodular hyperplasia to aphthoid ulceration. Histology showed patchy chronic inflammation in the colon in 11 children and reactive ileal lymphoid hyperplasia in seven, but no granulomas. Behavioural disorders included autism (nine), disintegrative psychosis (one), and possible postviral or vaccinal encephalitis (two). There were no focal neurological abnormalities and MRI and EEG tests were normal. Abnormal laboratory results were significantly raised urinary methylmalonic acid compared with age-matched controls (p=0.003), low haemoglobin in four children, and a low serum IgA in four children.
We identified associated gastrointestinal disease and developmental regression in a group of previously normal children, which was generally associated in time with possible environmental triggers.
Journal Article