Explore the vast range of titles available.

1. Tropical forests play an important role in the global carbon cycle, but the drivers of net forest biomass change (i.e. net carbon sequestration) are poorly understood. Here, we evaluate how abiotic factors (soil conditions and disturbance) and biotic factors (forest structure, diversity and community trait composition) shape three important demographic processes (biomass recruitment, growth and mortality) and how these underlie net biomass change. 2. To test this, we evaluated 9 years of biomass dynamics using 48 1-ha plots in a Bolivian tropical moist forest, and measured for the most abundant species eight functional traits that are important for plant carbon gain and loss. Demographic processes were related to the abiotic and biotic factors using structural equation models. 3. Variation in net biomass change across plots was mostly due to stand-level mortality, but mortality itself could not be predicted at this scale. Contrary to expectations, we found that species richness and trait composition – which is an indicator for the mass-ratio theory – had little effect on the demographic processes. Biomass recruitment (i.e. the biomass growth by recruiting trees) increased with higher resource availability (i.e. water and light) and with high species richness, probably because of increased resource use efficiency. Biomass growth of larger, established trees increased with higher sand content, which may facilitate root growth of larger trees to deeper soil layers. 4. In sum, diversity and mass-ratio are of limited importance for the productivity of this forest. Instead, in this moist tropical forest with a marked dry season, demographic processes are most strongly determined by soil texture, soil water availability and forest structure. Only by simultaneously evaluating multiple abiotic and biotic drivers of demographic processes, better insights can be gained into mechanisms playing a role in the carbon sequestration potential of tropical forests and natural systems in general.

Bacterial infections remain a significant cause of morbidity and mortality globally. Compounding the issue is the rise of antimicrobial-resistant strains, which limit treatment options. Macrophages play key roles in the immunity and pathogenicity of intracellular infections, such as those caused by Mycobacterium tuberculosis and Salmonella . Recent advancements have enabled us to better understand how the host orchestrates immune responses to fight these infections and, specifically how the infected cell rewires its metabolism to face this challenge. The engagement of the host cell in specific metabolic pathways impacts cell function and behaviour, and ultimately, infection outcomes. In this perspective, we summarise key findings regarding the metabolic adaptations in macrophages induced by Mycobacterium tuberculosis and Salmonella infections. We also explore how cross-pathogen studies can deepen our insights into infection biology to improve therapeutic design.

1. Essential resources such as water, nutrients and light vary over space and time and plant growth rates are expected to vary accordingly. We examined the effects of climate, soil and logging disturbances on diameter growth rates at the tree and stand level, using 165 1‐ha permanent sample plots distributed across Bolivian tropical lowland forests. 2. We predicted that growth rates would be higher in humid than in dry forests, higher in nutrient‐rich than nutrient‐poor forests and higher in logged than non‐logged forests. 3. Across the 165 plots we found positive basal area increases at the stand level, which agree with the generally reported biomass increases in tropical forests. 4. Multiple regression analysis demonstrated that climate variables, in particular water availability, were the strongest drivers of tree growth. More rainfall, a shorter and less intense dry period and higher temperatures led to higher tree growth rates. 5. Tree growth increased modestly with soil fertility and basal area growth was greatest at intermediate soil fertility. Surprisingly, tree growth showed little or no relationship with total soil nitrogen or plant available soil phosphorus. 6. Growth rates increased in logged plots just after logging, but this effect disappeared after 6 years. 7. Synthesis. Climate is the strongest driver of spatial variation in tree growth, and climate change may therefore have large consequences for forest productivity and carbon sequestration. The negative impact of decreased rainfall and increased rainfall seasonality on tree growth might be partly offset by the positive impact of increased temperature in these forests.

Thrombosis is a common consequence of infection that is associated with poor patient outcome. Nevertheless, the mechanisms by which infection-associated thrombosis is induced, maintained and resolved are poorly understood, as is the contribution thrombosis makes to host control of infection and pathogen spread. The key difference between infection-associated thrombosis and thrombosis in other circumstances is a stronger inflammation-mediated component caused by the presence of the pathogen and its products. This inflammation triggers the activation of platelets, which may accompany damage to the endothelium, resulting in fibrin deposition and thrombus formation. This process is often referred to as thrombo-inflammation. Strikingly, despite its clinical importance and despite thrombi being induced to many different pathogens, it is still unclear whether the mechanisms underlying this process are conserved and how we can best understand this process. This review summarizes thrombosis in a variety of models, including single antigen models such as LPS, and infection models using viruses and bacteria. We provide a specific focus on Typhimurium infection as a useful model to address all stages of thrombosis during infection. We highlight how this model has helped us identify how thrombosis can appear in different organs at different times and thrombi be detected for weeks after infection in one site, yet largely be resolved within 24 h in another. Furthermore, we discuss the observation that thrombi induced to Typhimurium are largely devoid of bacteria. Finally, we discuss the value of different therapeutic approaches to target thrombosis, the potential importance of timing in their administration and the necessity to maintain normal hemostasis after treatment. Improvements in our understanding of these processes can be used to better target infection-mediated mechanisms of thrombosis.

1. The analysis of species distribution patterns along environmental gradients is important for understanding the diversity and ecology of plants and species responses to climate change, but detailed data are surprisingly scarce for the tropics. 2. Here, we analyse the distribution of 100 woody species over 220 1‐ha forest plots distributed over an area of c. 160 000 km2, across large environmental gradients in lowland Bolivia and evaluate the relative importance of climate and soils in shaping species distribution addressing four multivariate environmental axes (rainfall amount and distribution, temperature, soil fertility and soil texture). 3. Although species abundance was positively related to species frequency (the number of plots in which the species is found), this relationship was rather weak, which challenges the view that most tropical forests are dominated at large scales by a few common species. 4. Species responded clearly to environmental gradients, and for most of the species (65%), climatic and soil conditions could explain most of the variation in occurrence (R2 > 0.50), which challenges the idea that most tropical tree species are habitat generalists. 5. Climate was a stronger driver of species distribution than soils; 91% of the species were affected by rainfall (distribution), 72% by temperature, 47% by soil fertility and 44% by soil texture. In contrast to our expectation, few species showed a typical unimodal response to the environmental gradients. 6. Synthesis. Tropical tree species specialize for different parts of the environmental gradients, and climate is a stronger driver of species distribution than soils. Because climate change scenarios predict increases in annual temperature and a stronger dry season for tropical forests, we may expect potentially large shifts in the distribution of tropical trees.

Vaccination with Vi capsular polysaccharide (Vi-PS) or protein-Vi typhoid conjugate vaccine (TCV) can protect adults against Typhi infections. TCVs offer better protection than Vi-PS in infants and may offer better protection in adults. Potential reasons for why TCV may be superior in adults are not fully understood. Here, we immunized wild-type (WT) mice and mice deficient in IgG or IgM with Vi-PS or TCVs (Vi conjugated to tetanus toxoid or CRM197) for up to seven months, with and without subsequent challenge with Vi-expressing Typhimurium. Unexpectedly, IgM or IgG alone were similarly able to reduce bacterial burdens in tissues, and this was observed in response to conjugated or unconjugated Vi vaccines and was independent of antibody being of high affinity. Only in the longer-term after immunization (>5 months) were differences observed in tissue bacterial burdens of mice immunized with Vi-PS or TCV. These differences related to the maintenance of antibody responses at higher levels in mice boosted with TCV, with the rate of fall in IgG titres induced to Vi-PS being greater than for TCV. Therefore, Vi-specific IgM or IgG are independently capable of protecting from infection and any superior protection from vaccination with TCV in adults may relate to responses being able to persist better rather than from differences in the antibody isotypes induced. These findings suggest that enhancing our understanding of how responses to vaccines are maintained may inform on how to maximize protection afforded by conjugate vaccines against encapsulated pathogens such as . Typhi.

infections remain a challenging health issue, causing significant morbidity and mortality worldwide. Current vaccines against typhoid fever display moderate efficacy whilst no licensed vaccines are available for paratyphoid fever or invasive non-typhoidal salmonellosis. Therefore, there is an urgent need to develop high efficacy broad-spectrum vaccines that can protect against typhoidal and non-typhoidal . The outer membrane porins OmpC and OmpF, have been shown to be highly immunogenic antigens, efficiently eliciting protective antibody, and cellular immunity. Furthermore, enterobacterial porins, particularly the OmpC, have a high degree of homology in terms of sequence and structure, thus making them a suitable vaccine candidate. However, the degree of the amino acid conservation of OmpC among typhoidal and non-typhoidal serovars is currently unknown. Here we used a bioinformatical analysis to classify the typhoidal and non-typhoidal OmpC amino acid sequences into different clades independently of their serological classification. Further, our analysis determined that the porin OmpC contains various amino acid sequences that are highly conserved among both typhoidal and non-typhoidal serovars. Critically, some of these highly conserved sequences were located in the transmembrane β-sheet within the porin β-barrel and have immunogenic potential for binding to MHC-II molecules, making them suitable candidates for a broad-spectrum vaccine. Collectively, these findings suggest that these highly conserved sequences may be used for the rational design of an effective broad-spectrum vaccine against .

Tropical forests have long been thought to be in stable state, but recent insights indicate that global change is leading to shifts in forest dynamics and species composition. These shifts may be driven by environmental changes such as increased resource availability, increased drought stress, and/or recovery from past disturbances. The relative importance of these drivers can be inferred from analyzing changes in trait values of tree communities. Here, we evaluate a decade of change in species and trait composition across five old-growth Neotropical forests in Bolivia, Brazil, Guyana, and Costa Rica that cover large gradients in rainfall and soil fertility. To identify the drivers of compositional change, we used data from 29 permanent sample plots and measurements of 15 leaf, stem, and whole-plant traits that are important for plant performance and should respond to global change drivers. We found that forests differ strongly in their community-mean trait values, resulting from differences in soil fertility and annual rainfall seasonality. The abundance of deciduous species with high specific leaf area increases from wet to dry forests. The community-mean wood density is high in the driest forests to protect xylem vessels against drought cavitation, and is high in nutrient-poor forests to increase wood longevity and enhance nutrient residence time in the plant. Interestingly, the species composition changed over time in three of the forests, and the community-mean wood density increased and the specific leaf area decreased in all forests, indicating that these forests are changing toward later successional stages dominated by slow-growing, shade-tolerant species. We did not see changes in other traits that could reflect responses to increased drought stress, such as increased drought deciduousness or decreased maximum adult size, or that could reflect increased resource availability (CO2, rainfall, or nitrogen). Changes in species and trait composition in these forests are therefore most likely caused by recovery from past disturbances. These compositional changes may also lead to shifts in ecosystem processes, such as a lower carbon sequestration and \"slower\" forest dynamics.

The influenza virus is a human pathogen that causes epidemics every year, as well as potential pandemic outbreaks, as occurred in 2009. Vaccination has proven to be sufficient in the prevention and containment of viral spreading. In addition to the current egg-based vaccines, new and promising vaccine platforms, such as cell culture-derived vaccines that include virus-like particles (VLPs), have been developed. VLPs have been shown to be both safe and immunogenic against influenza infections. Although antibody persistence has been studied in traditional egg-based influenza vaccines, studies on antibody response durations induced by VLP influenza vaccines in humans are scarce. Here, we show that subjects vaccinated with an insect cell-derived VLP vaccine, in the midst of the 2009 H1N1 influenza pandemic outbreak in Mexico City, showed antibody persistence up to 24 months post-vaccination. Additionally, we found that subjects that reported being revaccinated with a subsequent inactivated influenza virus vaccine showed higher antibody titres to the pandemic influenza virus than those who were not revaccinated. These findings provide insights into the duration of the antibody responses elicited by an insect cell-derived pandemic influenza VLP vaccine and the possible effects of subsequent influenza vaccination on antibody persistence induced by this VLP vaccine in humans.

Dried blood spot (DBS) samples can be used for the detection of severe acute respiratory syndrome coronavirus 2 spike antibodies. DBS sampling is comparable to matched serum samples with a relative 98.1% sensitivity and 100% specificity. Thus, DBS sampling offers an alternative for population-wide serologic testing in the coronavirus pandemic.