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Regenerated forests now compose over half of the world's tropical forest cover and are increasingly important as providers of ecosystem services, freshwater, and biodiversity conservation. Much of the value and functionality of regenerating forests depends on the plant diversity they contain. Tropical forest diversity is strongly shaped by mutualistic interactions between plants and fruit-eating animals (frugivores) that disperse seeds. Here we show how seed dispersal by birds can influence the speed and diversity of early successional forests in Puerto Rico. For two years, we monitored the monthly fruit production of bird-dispersed plants on a fragmented landscape, and measured seed dispersal activity of birds and plant establishment in experimental plots located in deforested areas. Two predominantly omnivorous bird species, the Northern Mockingbird (Mimus polyglottes) and the Gray Kingbird (Tyrannus dominicensis), proved critical for speeding up the establishment of woody plants and increasing the species richness and diversity of the seed rain in deforested areas. Seed dispersal by these generalists increased the odds for rare plant species to disperse and establish in experimental forest-regeneration plots. Results indicate that birds that mix fruit and insects in their diets and actively forage across open and forested habitats can play keystone roles in the regeneration of mutualistic plant-animal communities. Furthermore, our analyses reveal that rare-biased (antiapostatic) frugivory and seed dispersal is the mechanism responsible for increasing plant diversity in the early-regenerating community.

Macroautophagy decreases with age, and this change is considered a hallmark of the aging process. It remains unknown whether mitophagy, the essential selective autophagic degradation of mitochondria, also decreases with age. In our analysis of mitophagy in multiple organs in the mito-QC reporter mouse, mitophagy is either increased or unchanged in old versus young mice. Transcriptomic analysis shows marked upregulation of the type I interferon response in the retina of old mice, which correlates with increased levels of cytosolic mtDNA and activation of the cGAS/STING pathway. Crucially, these same alterations are replicated in primary human fibroblasts from elderly donors. In old mice, pharmacological induction of mitophagy with urolithin A attenuates cGAS/STING activation and ameliorates deterioration of neurological function. These findings point to mitophagy induction as a strategy to decrease age-associated inflammation and increase healthspan. Dysregulated autophagy and mitochondrial function are two well-described hallmarks of aging. Here, the authors describe an unexpected age-associated upregulation of mitophagy in response to neuroinflammation triggered by leaked mtDNA.

Recent studies have demonstrated the impact of diet on microbiota composition, but the essential need for the optimization of production rates and costs forces farms and aquaculture production to carry out continuous dietary tests. In order to understand the effect of total fishmeal replacement by vegetable-based feed in the sea bream (Sparus aurata), the microbial composition of the stomach, foregut, midgut and hindgut was analysed using high-throughput 16S rDNA sequencing, also considering parameters of growth, survival and nutrient utilisation indices.A total of 91,539 16S rRNA filtered-sequences were analysed, with an average number of 3661.56 taxonomically assigned, high-quality sequences per sample. The dominant phyla throughout the whole gastrointestinal tract were Actinobacteria, Protebacteria and Firmicutes. A lower diversity in the stomach in comparison to the other intestinal sections was observed. The microbial composition of the Recirculating Aquaculture System was totally different to that of the sea bream gastrointestinal tract. Total fishmeal replacement had an important impact on microbial profiles but not on diversity. Streptococcus (p-value: 0.043) and Photobacterium (p-value: 0.025) were highly represented in fish fed with fishmeal and vegetable-meal diets, respectively. In the stomach samples with the vegetable diet, reads of chloroplasts and mitochondria from vegetable dietary ingredients were rather abundant. Principal Coordinate Analysis showed a clear differentiation between diets in the microbiota present in the gut, supporting the presence of specific bacterial consortia associated with the diet.Although differences in growth and nutritive parameters were not observed, a negative effect of the vegetable diet on the survival rate was determined. Further studies are required to shed more light on the relationship between the immune system and sea bream gastrointestinal tract microbiota and should consider the modulation of the microbiota to improve the survival rate and nutritive efficacy when using plant-based diets.

The design of plant tissue culture media remains a complicated task due to the interactions of many factors. The use of computer-based tools is still very scarce, although they have demonstrated great advantages when used in large dataset analysis. In this study, design of experiments (DOE) and three machine learning (ML) algorithms, artificial neural networks (ANNs), fuzzy logic, and genetic algorithms (GA), were combined to decipher the key minerals and predict the optimal combination of salts for hardy kiwi ( Actinidia arguta ) in vitro micropropagation. A five-factor experimental design of 33 salt treatments was defined using DOE. Later, the effect of the ionic variations generated by these five factors on three morpho-physiological growth responses – shoot number (SN), shoot length (SL), and leaves area (LA) – and on three quality responses - shoots quality (SQ), basal callus (BC), and hyperhydricity (H) – were modeled and analyzed simultaneously. Neurofuzzy logic models demonstrated that just 11 ions (five macronutrients (N, K, P, Mg, and S) and six micronutrients (Cl, Fe, B, Mo, Na, and I)) out of the 18 tested explained the results obtained. The rules “IF – THEN” allow for easy deduction of the concentration range of each ion that causes a positive effect on growth responses and guarantees healthy shoots. Secondly, using a combination of ANNs-GA, a new optimized medium was designed and the desired values for each response parameter were accurately predicted. Finally, the experimental validation of the model showed that the optimized medium significantly promotes SQ and reduces BC and H compared to standard media generally used in plant tissue culture. This study demonstrated the suitability of computer-based tools for improving plant in vitro micropropagation: (i) DOE to design more efficient experiments, saving time and cost; (ii) ANNs combined with fuzzy logic to understand the cause-effect of several factors on the response parameters; and (iii) ANNs-GA to predict new mineral media formulation, which improve growth response, avoiding morpho-physiological abnormalities. The lack of predictability on some response parameters can be due to other key media components, such as vitamins, PGRs, or organic compounds, particularly glycine, which could modulate the effect of the ions and needs further research for confirmation.

Leaf‐cutter ants are a prominent feature in Neotropical ecosystems, but a comprehensive assessment of their effects on ecosystem functions is lacking. We reviewed the literature and used our own recent findings to identify knowledge gaps and develop a framework to quantify the effects of leaf‐cutter ants on ecosystem processes. Leaf‐cutter ants disturb the soil structure during nest excavation changing soil aeration and temperature. They mix relatively nutrient‐poor soil from deeper layers with the upper organic‐rich layers increasing the heterogeneity of carbon and nutrients within nest soils. Leaf‐cutter ants account for about 25% of all herbivory in Neotropical forest ecosystems, moving 10%–15% of leaves in their foraging range to their nests. Fungal symbionts transform the fresh, nutrient‐rich vegetative material to produce hyphal nodules to feed the ants. Organic material from roots and arbuscular mycorrhizal fungi enhances carbon and nutrient turnover in nest soils and creates biogeochemical hot spots. Breakdown of organic matter, microbial and ant respiration, and nest waste material decomposition result in increased CO2, CH4, and N2O production, but the build‐up of gases and heat within the nest is mitigated by the tunnel network ventilation system. Nest ventilation dynamics are challenging to measure without bias, and improved sensor systems would likely solve this problem. Canopy gaps above leaf‐cutter ant nests change the light, wind and temperature regimes, which affects ecosystem processes. Nests differ in density and size depending on colony age, forest type and disturbance level and change over time resulting in spatial and temporal changes of ecosystem processes. These characteristics remain a challenge to evaluate rapidly and non‐destructively. Addressing the knowledge gaps identified in this synthesis will bring insights into physical and biological processes driving biogeochemical cycles at the nest and ecosystem scale and will improve our understanding of ecosystem biogeochemical heterogeneity and larger scale ecological phenomena. A plain language summary is available for this article. Plain Language Summary

We use the optimal foraging theory to study coexistence between two plant species and a generalist pollinator. We compare conditions for plant coexistence for non-adaptive vs. adaptive pollinators that adjust their foraging strategy to maximize fitness. When pollinators have fixed preferences, we show that plant coexistence typically requires both weak competition between plants for resources (e.g., space or nutrients) and pollinator preferences that are not too biased in favour of either plant. We also show how plant coexistence is promoted by indirect facilitation via the pollinator. When pollinators are adaptive foragers, pollinator's diet maximizes pollinator's fitness measured as the per capita population growth rate. Simulations show that this has two conflicting consequences for plant coexistence. On the one hand, when competition between pollinators is weak, adaptation favours pollinator specialization on the more profitable plant which increases asymmetries in plant competition and makes their coexistence less likely. On the other hand, when competition between pollinators is strong, adaptation promotes generalism, which facilitates plant coexistence. In addition, adaptive foraging allows pollinators to survive sudden loss of the preferred plant host, thus preventing further collapse of the entire community.

We provide an overview of the current state of knowledge of island frugivory and seed dispersal and identify knowledge gaps that are important for fundamental research on—and applied conservation of—island ecosystems. We conducted a systematic literature search of frugivory and seed dispersal on islands, omitting large, continental islands. This revealed a total of 448 studies, most (75%) published during the last two decades, especially after 2010. Nearly 65% of them were focused on eight archipelagos. There is a paucity of studies in Pacific archipelagos near Asia and Australia, and in the Indian Ocean. Data on island frugivory and seed dispersal are diverse but highly uneven in geographic and conceptual coverage. Despite their limited biodiversity, islands are essential reservoirs of endemic plants and animals and their interactions. Due to the simplicity of insular ecosystems, we can assess the importance of seed dispersal theory and mechanisms at species and community levels. These include the ecological and biogeographical meaning and prevalence of non-standard mechanisms of seed dispersal on islands; the seed dispersal effectiveness and the relative roles of different frugivore guilds (birds and reptiles being the most important); and patterns of community organization and their drivers as revealed by interaction networks. Island systems are characterized by the extinction of many natives and endemics, and high rates of species introductions. Therefore, understanding how these losses and additions alter seed dispersal processes has been a prevailing goal of island studies and an essential foundation for the effective restoration and conservation of islands.

Vector-borne pathogens are known to alter the phenotypes of their primary hosts and vectors, with implications for disease transmission as well as ecology. Here we show that a plant virus, barley yellow dwarf virus, increases the surface temperature of infected host plants (by an average of 2 °C), while also significantly enhancing the thermal tolerance of its aphid vector Rhopalosiphum padi  (by 8 °C). This enhanced thermal tolerance, which was associated with differential upregulation of three heat-shock protein genes, allowed aphids to occupy higher and warmer regions of infected host plants when displaced from cooler regions by competition with a larger aphid species, R. maidis . Infection thereby led to an expansion of the fundamental niche of the vector. These findings show that virus effects on the thermal biology of hosts and vectors can influence their interactions with one another and with other, non-vector organisms. Organisms living on and inside of plants—such as microbes and herbivorous insects—can interact in complex ways. Here the authors show that a plant virus increases the temperature of the plant and also the thermal tolerance of an aphid species feeding on the plant; this change in thermal tolerance also affects competition with another aphid species.

Aim Biological invasions pose one of the most severe threats to global biodiversity. Still, invasions can create positive ecological relationships and services, which can sometimes result in challenges for conservation efforts. A case in point is the invasion of alien plants that form mutualisms with native frugivorous birds. Here, we examined the correlation between honeysuckles (Lonicera spp.) and the bird communities in a landscape of central Pennsylvania during the fall months. Location State College area in central Pennsylvania, USA. Methods We conducted point counts to quantify the abundance of birds and fleshy-fruited plant species within a 187.5 km² landscape that included forested, urban and agricultural lands. We also compared fruit-removal rates for a native fruiting plant under low and high Lonicera densities. Results The abundance of birds showed a strong positive association with Lonicera fruits, with the abundance of Turdus migratorius and Dumetella carolinensis showing the strongest correlations. We also found that fruit-removal rates were 30% larger for a native plant species in areas of high Lonicera density compared to a site with low density of Lonicera. Main conclusions Our results suggest that Lonicera may currently serve as a main axis for the organization of bird communities and the networks of frugivore-plant interactions in central Pennsylvania. Since populations of key bird frugivores may be currently depending on Lonicera resources, we argue that control measures should account for the negative effects that the loss of this fruit resource could have on populations of native consumers in highly invaded regions.

Seabirds create fluxes of nutrients from marine to terrestrial ecosystems that influence the food webs of small islands. We investigated how guano inputs shape terrestrial food webs by comparing species of selected plant and animal species in a red-footed booby colony in Mona Island (Puerto Rico, Caribbean Sea), to sites of the island lacking guano inputs. We quantified guano deposition and its relationship to plant biomass production, fecundity and density, as well as the activity of native and introduced animal species. In general, guano inputs increased the gross primary plant productivity, size, and fecundity by twofold. Guano inputs were also associated with twofold increases in density of Anole lizards, but also to increases in the activity of introduced pigs (> 500%), goats (> 30%), and cats (> 500%), which negatively impact native species. In particular, elevated pig and cat activity within the booby colony was correlated with lower activity of endemic ground lizards and of introduced rats. Our results also suggest that severe droughts associated with climate change exacerbate the negative effects that introduced species have on vegetation and reduce the positive effects of seabird guano inputs. Our findings underscore the importance of allochthonous guano inputs in subsidizing plant productivity and native and endemic species in small oceanic islands, but also in increasing the negative impacts of introduced mammals. Management and conservation efforts should focus on the exclusion (or eradication) of introduced mammals, particularly pigs and goats, from remnant seabird colonies in Mona Island.