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Soil solution chemistry is influenced by atmospheric deposition of air pollutants, exchange processes with the soil matrix and soil-rhizosphere-plant interactions. In this study we present the results of the long-term Intercantonal Forest Observation Program in Switzerland with soil solution measurements since 1998 on a current total of 47 plots. The forest sites comprise two major forest types of Switzerland including a wide range of ecological gradients such as different nitrogen (N) deposition and soil conditions. The long-term data set of 20 years of soil solution measurements revealed an ongoing, but site-specific soil acidification. In strongly acidified soils (soil pH below 4.2), acidification indicators changed only slowly over the measured period, possibly due to high buffering capacity of the aluminum buffer (pH 4.2-3.8). In contrast, in less acidified sites we observed an increasing acidification rate over time, reflected, for example, by the continuous decrease in the ratio of base cations to aluminum (BC/Al ratio). Nowadays, the main driver of soil acidification is the high rate of N deposition, causing cation losses and hampering sustainable nutrient balances for tree nutrition. Mean nitrate leaching rates for the years 2005-2017 were 9.4 kg N ha-1 yr-1, ranging from 0.04 to 53 kg N ha-1 yr-1. Three plots with high N input had a remarkable low nitrate leaching. Both N deposition and nitrate leaching have decreased since 2000. However, the latter trend may be partly explained due to increased drought in recent years. Nonetheless, those high N depositions are still affecting the majority of the forest sites. Taken together, this study gives evidence of anthropogenic soil acidification in Swiss forest stands. The underlying long-term measurements of soil solution provides important information on nutrient leaching losses and the impact climate change effects such as droughts. Furthermore, this study improves the understanding of forest management and tree mortality regarding varying nitrate leaching rates.

As precipitation infiltrates into soils, it can recharge them, displace previously stored waters, or bypass already‐filled pores. Using 3,697 δ2H and δ18O measurements of water collected nearly monthly over >3 years in 47 forest plots across Switzerland, we present a systematic investigation of the controls on mobile soil water transport. We quantified the lags and damping of water as it percolates downward using young water fraction analysis (Fyw), and the fractions of soil water composed by precipitation that fell within the previous month (new water fractions, Fnew). The Fnew of water sampled in surface soils ranged widely, from 0% to 50%, but those fractions typically decreased with depth and converged on values of 0%–20% at depths below 80 cm. Soil characteristics explained much of the variation in Fyw and Fnew, as did climatological and root characteristics to a lesser, but still statistically significant, degree.

European beech is one of the most important deciduous tree species in natural forest ecosystems in Central Europe. Its dominance is now being questioned by the emerging drought damages due to the increased incidence of severe summer droughts. In Switzerland, Fagus sylvatica have been observed in the Intercantonal Forest Observation Program since 1984. The dataset presented here includes 179176 annual observations of beech trees on 102 plots during 37 years. The plots cover gradients in drought, nitrogen deposition, ozone, age, altitude, and soil chemistry. In dry regions of Switzerland, the dry and hot summer of 2018 caused a serious branch dieback, increased mortality in Fagus sylvatica and increased yellowing of leaves. Beech trees recovered less after 2018 than after the dry summer 2003 which had been similar in drought intensity except that the drought in 2018 started earlier in spring. Our data analyses suggest the importance of drought in subsequent years for crown transparency and mortality in beech. The drought in 2018 followed previous dry years of 2015 and 2017 which pre-weakened the trees. Our long-term data indicate that the drought from up to three previous years were significant predictors for both tree mortality and for the proportion of trees with serious (>60%) crown transparency. The delay in mortality after the weakening event suggests also the importance of weakness parasites. The staining of active vessels with safranine revealed that the cavitation caused by the low tree water potentials in 2018 persisted at least partially in 2019. Thus, the ability of the branches to conduct water was reduced and the branches dried out. Furthermore, photooxidation in light-exposed leaves has increased strongly since 2011. This phenomenon was related to low concentrations of foliar phosphorus (P) and hot temperatures before leaf harvest. The observed drought effects can be categorized as (i) hydraulic failure (branch dieback), (ii) energy starvation as a consequence of closed stomata and P deficiency (photooxidation) and (iii) infestation with weakness parasites (beech bark disease and root rots).

Gardens are hot spots for urban biodiversity and provide habitats for many plant and animal spe- cies, both above- and below-ground. Furthermore, gardens provide a wide range of ecosystem services, including carbon (C) storage and nutrient cycling. Although the soil is the foundation of sustainable gardens providing those ecosystem services, very little is known about the conseque- nces of garden management on soil quality. Here we present a comprehensive assessment of urban garden soil quality, including biotic and abiotic site characteristics combined with land-use history and garden management information in a multivariate evaluation. A set of 44 soil quality indicators was measured at 170 sites of 85 gardens in the city of Zurich, Switzerland, comprising contrastingly managed garden habitats along a gradient of urban density. Taken together, our results show that garden management was the driving factor that influenced soil quality and soil functions. Eco-physiological soil quality indices were useful to identify differences in disturbance and intensity of soil use, showing highest microbial (microbial biomass (Cmic)/soil organic carbon (SOC)) and lowest metabolic (qCO2) quotients in perennial grass sites compared to annual vegetable sites. Despite the intensity of soil disturbance in annual vegetable and flower beds, the highest endogeic earthworm biomass and diversity were found in those habitats. Whereas decomposition of green tea bags was higher in grass sites. Soil heavy metal contents varied considerably and could not be linked with garden management practices, but with spatial patterns of industry and traffic. We conclude that understanding soil quality in urban ecosystems needs multi-indicator frameworks to capture the complexity of soil characteristics and the influencing factors in space and time. This study contributes to a better understanding of urban gardens and enhances the development of sustainable soil management strategies aimed at long-term improvement of soil quality and related ecosystem services in cities.

Urban soils are a mixture of natural soil-forming factors and anthropogenic activities (Shuster and Dadio, 2018). [...]they require an adapted set of indicators for a soil quality assessment. Furthermore, sample plots were assigned one of three garden habitat types: vegetable beds (i.e., annual vegetable plants), flower beds and berry cultivations (i.e., perennial flowers, roses, and berry shrubs), and lawn (i.e., meadows and turf). [...]our study may help to analyze the effect of garden management or urbanization on soil quality (see Tresch et al., 2018) or provide data for modeling of carbon dynamics in urban soils or other soil based ecosystem services. Simon Tresch1,2,3*, Marco Moretti3, Renée-Claire Le Bayon1, Paul Mäder2, Andrea Zanetta3,4, David Frey3,5, Bernhard Stehle2,6, Anton Kuhn2, Adolphe Munyangabe2 and Andreas Fliessbach2 * 1Functional Ecology Laboratory, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland * 2Department of Soil Sciences, Research Institute of Organic Agriculture (FiBL), Frick, Switzerland * 3Biodiversity and Conservation Biology, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland * 4Department of Environmental System Science, Institute of Terrestrial Ecosystems, ETH Zurich, Zurich, Switzerland * 5Department of Biology, University of Fribourg, Fribourg, Switzerland * 6Department of Biology, Ecology, University of Konstanz, Konstanz, Germany

The majority of soil organic nitrogen (N) is bound in protein-like compounds and therefore its proteolysis in peptides and amino acids is considered the initial and rate limiting step of N mineralization. Proteolysis of N bound in organic fertilizer and subsequent provisioning for crops is a central element in agro-ecological intensification. Long-term farming system effects on N provisioning from organic fertilizer to crops and its underlying functional microbial communities were analyzed in experiments conducted in soils from the “DOK” system comparison trial (bio-Dynamic, bio-Organic, and “Konventionell”) DOK farming system comparison subjected to optimal and future projected drought scenarios. A plant nutrition experiment using 15N labelled lupine as a fertilizer (green manure) identified 30% higher amounts of N derived from fertilizer in ryegrass grown on organically compared to conventionally managed soil, but only when subjected to dry conditions. A second experiment, also amended with lupine green manure, assessed the effect of farming system and drought stress on N cycling microbes with a focus on alkaline (apr) and neutral (npr) metallopeptidase encoding microbial communities. apr encoding microbial communities were more strongly affected by farming system and water treatment than npr encoding communities. Differences in structure and diversity of apr encoding microbial communities showed concomitant patterns with distinct N provisioning from organic fertilizer in the plant nutrition experiment. It is suggested that conventionally managed systems are less capable in maintaining diversity and initial structure of apr encoding microbial communities when subjected to drought scenarios. Overall, we demonstrated organically managed soils to provide a more stable N provisioning potential from organic fertilizer under future drought scenarios, likely facilitated by a distinct and more adaptive proteolytic microbial community. This work contributes to an in-depth comprehension of yet poorly studied fundamental soil processes and helps developing strategies to maintain a versatile and functioning microbial community in a rapidly changing environment.

Urban gardens are popular green spaces that have the potential to provide essential ecosystem services, support human well-being, and at the same time foster biodiversity in cities. We investigated the impact of gardening activities on five soil functions and the relationship between plant (600 spp.) and soil fauna (earthworms: 18 spp., springtails: 39 spp.) in 85 urban gardens (170 sites) across the city of Zurich (Switzerland). Our results suggest that high plant diversity in gardens had a positive effect on soil fauna and soil multifunctionality, and that garden management intensity decreased plant diversity. Indices of biological activity in soil, such as organic and microbial carbon and bacterial abundance, showed a direct positive effect on soil multifunctionality. Soil moisture and disturbance, driven by watering and tilling, were the driving forces structuring plant and soil fauna communities. Plant indicator values proved useful to assess soil fauna community structure, even in anthropogenic plant assemblages. We conclude that to enhance soil functions, gardeners should increase plant diversity, and lower management intensity. Soil protective management practices, such as applying compost, mulch or avoiding soil tilling, should be included in urban green space planning to improve urban biodiversity and nature’s contribution to people.

Gardens have effects on the local ecology as well as on the wellbeing of the gardener, but few studies have attempted to study gardens using both ecological and social outcome variables. The aim of this exploratory study is to address this research gap by identifying the characteristics of gardens and the management practices of gardeners that enhance the outcomes of gardening, which we separate into three dimensions: human wellbeing, biodiversity, and soil quality. Data were collected from 18 gardens in Zurich, Switzerland and a typology of gardeners was identified, which included ‘conservationist’, ‘functional’, ‘minimum effort’, ‘child-friendly’, and ‘aesthetic’ gardeners. The conservationist gardeners were found to have, on average, the highest species richness in their gardens, while the minimum effort gardeners had the lowest, which suggests that some degree of management can enhance species richness. The conservationist and minimum effort gardeners had, on average, the highest values for stable aggregates, while the minimum effort gardeners had the highest phosphorous content in their soil. The wellbeing of the minimum effort gardeners was lower than the other groups, which suggests it is the act of gardening, rather than merely having a garden, which leads to wellbeing outcomes. The results suggest that ecologically friendly gardening is compatible with desired social outcomes and furthermore that the beneficial effects of gardens are indeed related to the practices implemented by the gardeners, which are influenced by their attitudes towards gardening and the role of gardens in their lives.

Background The genus Corynebacterium comprises well-known animal and human pathogens as well as commensals of skin and mucous membranes. Species formerly regarded as contaminants are increasingly being recognized as opportunistic pathogens. Corynebacterium oculi has recently been described as a human ocular pathogen but has so far not been reported in dogs. Case presentation Here we present two cases of infection with a novel Corynebacterium sp. , a corneal ulcer and a case of bacteriuria. The two bacterial isolates could not be identified by MALDI-TOF MS. While 16 S rRNA gene (99.3% similarity) and rpoB (96.6% identity) sequencing led to the preliminary identification of the isolates as Corynebacterium ( C. ) oculi , whole genome sequencing revealed the strains to be closely related to, but in a separate cluster from C. oculi . Antimicrobial susceptibility testing showed high minimal inhibitory concentrations of lincosamides, macrolides, tetracycline, and fluoroquinolones for one of the isolates, which also contained an erm (X) and tet -carrying plasmid as well as a nonsynonymous mutation leading to an S84I substitution in the quinolone resistance determining region of GyrA. Conclusions While the clinical signs of both dogs were alleviated by antimicrobial treatment, the clinical significance of these isolates remains to be proven. However, considering its close relation with C. oculi , a known pathogen in humans, pathogenic potential of this species is not unlikely. Furthermore, these bacteria may act as reservoir for antimicrobial resistance genes also in a One Health context since one strain carried a multidrug resistance plasmid related to pNG3 of C. diphtheriae .

The 2017 History of Science Society annual meeting is discussed.