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Increasing atmospheric CO 2 from man-made climate change is reducing surface ocean pH. Due to limited instrumental measurements and historical pH records in the world’s oceans, seawater pH variability at the decadal and centennial scale remains largely unknown and requires documentation. Here we present evidence of striking secular trends of decreasing pH since the late nineteenth century with pronounced interannual to decadal–interdecadal pH variability in the South Pacific Ocean from 1689 to 2011 CE. High-amplitude oceanic pH changes, likely related to atmospheric CO 2 uptake and seawater dissolved inorganic carbon fluctuations, reveal a coupled relationship to sea surface temperature variations and highlight the marked influence of El Niño/Southern Oscillation and Interdecadal Pacific Oscillation. We suggest changing surface winds strength and zonal advection processes as the main drivers responsible for regional pH variability up to 1881 CE, followed by the prominent role of anthropogenic CO 2 in accelerating the process of ocean acidification. Ocean acidification due to the industrial era is a major marine environmental concern, yet little is known on the historical ocean pH changes prior to human influence. Here, Wu et al. show that tropical South Pacific seawater pH is linked to ENSO pacing and has recently been decreasing rapidly.

Madagascar’s expanding blue economy is largely underpinned by seaweed aquaculture, particularly Kappaphycus alvarezii (Cottonii), which offers an alternative to declining small-scale fisheries and strengthens the resilience of coastal socio-ecosystems. Ensuring the sustainability of this economic activity requires effective ecological monitoring of aquaculture sites and surrounding habitats. This study examines and compares the performance of two imaging configurations—an RGB composite derived from a subset of multispectral images capturing red (650 nm), green (560 nm), and blue (450 nm) bands; and a five-band multispectral (MS) image encompassing blue, green, red, red-edge (730 nm), and near-infrared (840 nm) bands—combined with a Random Forest (RF) classification model, for benthic habitat mapping in a seaweed cultivation context. High-resolution orthomosaics (2 cm/pixel) enabled the discrimination of Kappaphycus cultivation plots from three shallow-water habitats: (i) ‘benthic macrophytes’, which comprise: seagrass meadows and benthic macroalgal; (ii) ‘sandy bottom’ and (iii) ‘green algae’. The RF classification achieved an overall accuracy of 87% (Kappa = 0.82) across ~10 hectares. Producer’s accuracy exceeded 80% for Kappaphycus cultivation, green algae, and sandy bottom for both the RGB and MS datasets, indicating strong classification performance. However, early-stage seaweed was occasionally misclassified as benthic macrophytes, likely due to its low biomass and weak spectral signature. This UAS-based approach provided a robust and cost-effective framework for monitoring off-bottom seaweed farms and associated natural habitats. This approach supports sustainable aquaculture development and integrated coastal management in Madagascar and comparable tropical reef socio-ecosystems.

Aim: Various coral reef organisms display distinct gradients in taxonomic turnover throughout the tropical Pacific Ocean. Marine macrophytes are one of the most dominant and ecologically important benthic components of tropical reefs, yet little is known about the ecological biogeography of the macrophyte assemblages throughout this biodiverse region. This study assessed: (1) the geographical clustering of macrophyte assemblages in the tropical Pacific; (2) the environmental/geographical factors that best explain the observed patterns in taxon richness and taxon composition; and (3) the validity of large-scale biogeographical hypotheses with respect to the distribution of macrophyte assemblages. Location: Coral reefs of 39 US Pacific islands. Methods: Surveys of reef macrophytes for all 39 Pacific islands were conducted from 2004 to 2007. Rank-order data of quadrats were transformed to proportional abundance data in order to compute site averages for each of the 84 macrophyte categories. Further data analysis employed taxon accumulation curves, generalized additive models, and multivariate techniques. Results: Pacific macrophyte assemblages displayed consistently higher within-archipelago similarities than between-archipelago similarities, which is reflected in pronounced differences in functional group composition between archipelagos. The maximum land elevation, maximum seasonal sea surface temperature, reef extent, and longitude of the investigated islands were the predictor variables that best described the similarities in macrophyte assemblage structure among islands. Maximum land elevation and reef extent, however, were the two predictor variables that best explained macrophyte richness per island. Main conclusions: Macrophyte assemblages of the Pacific Islands cluster in geographical groups, indicative of the importance of evolutionary factors related to dispersal and speciation. Whereas macrophyte assemblage structure is governed by both local (habitat diversity and availability) and regional (geographical and environmental descriptors related to oceanic isolation and latitude) variables, the macrophyte richness of these islands is defined primarily by local habitat diversity and availability. Biogeographical patterns of marine macrophyte assemblages in the tropical Pacific deviate from those of other well-studied marine organisms.

Experiments have demonstrated that ocean acidification (OA) conditions projected to occur by the end of the century will slow the calcification of numerous coral species and accelerate the biological erosion of reef habitats (bioerosion). Microborers, which bore holes less than 100 μm diameter, are one of the most pervasive agents of bioerosion and are present throughout all calcium carbonate substrates within the reef environment. The response of diverse reef functional groups to OA is known from real-world ecosystems, but to date our understanding of the relationship between ocean pH and carbonate dissolution by microborers is limited to controlled laboratory experiments. Here we examine the settlement of microborers to pure mineral calcium carbonate substrates (calcite) along a natural pH gradient at a volcanically acidified reef at Maug, Commonwealth of the Northern Mariana Islands (CNMI). Colonization of pioneer microborers was higher in the lower pH waters near the vent field. Depth of microborer penetration was highly variable both among and within sites (4.2-195.5 μm) over the short duration of the study (3 mo.) and no clear relationship to increasing CO2 was observed. Calculated rates of biogenic dissolution, however, were highest at the two sites closer to the vent and were not significantly different from each other. These data represent the first evidence of OA-enhancement of microboring flora colonization in newly available substrates and provide further evidence that microborers, especially bioeroding chlorophytes, respond positively to low pH. The accelerated breakdown and dissolution of reef framework structures with OA will likely lead to declines in structural complexity and integrity, as well as possible loss of essential habitat.

Spatial and temporal variabilities in species composition, abundance, distribution, and bioeroding activity of euendolithic microorganisms were investigated in experimental blocks of the massive coral Porites along an inshore-offshore transect across the northern Great Barrier Reef (Australia) over a 3-year period. Inshore reefs showed turbid and eutrophic waters, whereas the offshore reefs were characterized by oligotrophic waters. The euendolithic microorganisms and their ecological characteristics were studied using techniques of microscopy, petrographic sections, and image analysis. Results showed that euendolithic communities found in blocks of coral were mature. These communities were dominated by the chlorophyte Ostreobium quekettii, the cyanobacterium Plectonema terebrans, and fungi. O. quekettii was found to be the principal agent of microbioerosion, responsible for 70-90% of carbonate removal. In the offshore reefs, this oligophotic chlorophyte showed extensive systems of filaments that penetrated deep inside coral skeletons (up to 4.1 mm) eroding as much as 1 kg CaCO₃ eroded m⁻² year⁻¹. The percentage of colonization by euendolithic filaments at the surface of blocks did not vary significantly among sites, while their depths of penetration, especially that of O. quekettii (0.6-4.1 mm), increased significantly and gradually with the distance from the shore. Rates of microbioerosion (0.1-1.4 kg m⁻² after 1 year and 0.2-1.3 kg m⁻² after 3 years of exposure) showed a pattern similar to the one found for the depth of penetration of O. quekettii filaments. Accordingly, oligotrophic reefs had the highest rates of microbioerosion of up to 1.3 kg m⁻² year⁻¹, whereas the development of euendolithic communities in inshore reefs appeared to be limited by turbidity, high sedimentation rates, and low grazing pressure (rates <0.5 kg m⁻² after 3 years). Those results suggest that boring microorganisms, including O. quekettii, have a significant impact on the overall calcium carbonate budget of coral reef ecosystems, which varies according to environmental conditions.

Coral reef net ecosystem calcification (NEC) has decreased for many Caribbean reefs over recent decades primarily due to a combination of declining coral cover and changing benthic community composition. Chemistry-based approaches to calculate NEC utilize the drawdown of seawater total alkalinity (TA) combined with residence time to calculate an instantaneous measurement of NEC. Census-based approaches combine annual growth rates with benthic cover and reef structural complexity to estimate NEC occurring over annual timescales. Here, NEC was calculated for Hog Reef in Bermuda using both chemistry and census-based NEC techniques to compare the mass-balance generated by the two methods and identify the dominant biocalcifiers at Hog Reef. Our findings indicate close agreement between the annual 2011 census-based NEC 2.35±1.01 kg CaCO3•m-2•y-1 and the chemistry-based NEC 2.23±1.02 kg CaCO3•m-2•y-1 at Hog Reef. An additional record of Hog Reef TA data calculated from an autonomous CO2 mooring measuring pCO2 and modeled pHtotal every 3-hours highlights the dynamic temporal variability in coral reef NEC. This ability for chemistry-based NEC techniques to capture higher frequency variability in coral reef NEC allows the mechanisms driving NEC variability to be explored and tested. Just four coral species, Diploria labyrinthiformis, Pseudodiploria strigosa, Millepora alcicornis, and Orbicella franksi, were identified by the census-based NEC as contributing to 94±19% of the total calcium carbonate production at Hog Reef suggesting these species should be highlighted for conservation to preserve current calcium carbonate production rates at Hog Reef. As coral cover continues to decline globally, the agreement between these NEC estimates suggest that either method, but ideally both methods, may serve as a useful tool for coral reef managers and conservation scientists to monitor the maintenance of coral reef structure and ecosystem services.

Early-life stages of reef-building corals are vital to coral existence and reef maintenance. It is therefore crucial to study juvenile coral response to future climate change pressures. Moreover, corals are known to be reliable recorders of environmental conditions in their skeletal materials. Aposymbiotic Acropora millepora larvae were cultured in different seawater temperature (27 and 29ºC) and pCO2 (390 and 750 µatm) conditions to understand the impacts of ‘end of century’ ocean acidification (OA) and ocean warming (OW) conditions on skeletal morphology and geochemistry. The experimental conditions impacted primary polyp juvenile coral skeletal morphology and growth resulting in asymmetric translucent appearances with brittle skeleton features. The impact of OA resulted in microstructure differences with decreased precipitation or lengthening of fasciculi and disorganized aragonite crystals that led to more concentrations of centers of calcifications. The coral skeletal δ11B composition measured by laser ablation MC-ICP-MS was significantly affected by pCO2 (p = 0.0024) and water temperature (p = 1.46 x 10-5). Reconstructed pH of the primary polyp skeleton using the δ11B proxy suggests a difference in coral calcification site and seawater pH consistent with previously observed coral pH up-regulation. Similarly, trace element results measured by laser ablation ICP-MS indicate the impact of pCO2. Primary polyp juvenile Sr/Ca ratio indicates a bias in reconstructed sea surface temperature (SST) under higher pCO2 conditions. Coral microstructure content changes (center of calcification and fasciculi) due to OA possibly contributed to the variability in B/Ca ratios. Our results imply that increasing OA and OW may lead to coral acclimation issues and species-specific inaccuracies of the commonly used Sr/Ca-SST proxy.

The marine microbiome arouses an increasing interest, aimed at better understanding coral reef biodiversity, coral resilience, and identifying bioindicators of ecosystem health. The present study is a microbiome mining of three environmentally contrasted sites along the Hermitage fringing reef of La Réunion Island (Western Indian Ocean). This mining aims to identify bioindicators of reef health to assist managers in preserving the fringing reefs of La Réunion. The watersheds of the fringing reefs are small, steeply sloped, and are impacted by human activities with significant land use changes and hydrological modifications along the coast and up to mid-altitudes. Sediment, seawater, and coral rubble were sampled in austral summer and winter at each site. For each compartment, bacterial, fungal, microalgal, and protist communities were characterized by high throughput DNA sequencing methodology. Results show that the reef microbiome composition varied greatly with seasons and reef compartments, but variations were different among targeted markers. No significant variation among sites was observed. Relevant bioindicators were highlighted per taxonomic groups such as the Firmicutes:Bacteroidota ratio (8.4%:7.0%), the genera Vibrio (25.2%) and Photobacterium (12.5%) dominating bacteria; the Ascomycota:Basidiomycota ratio (63.1%:36.1%), the genera Aspergillus (40.9%) and Cladosporium (16.2%) dominating fungi; the genus Ostreobium (81.5%) in Chlorophyta taxon for microalgae; and the groups of Dinoflagellata (63.3%) and Diatomea (22.6%) within the protista comprising two dominant genera: Symbiodinium (41.7%) and Pelagodinium (27.8%). This study highlights that the identified bioindicators, mainly in seawater and sediment reef compartments, could be targeted by reef conservation stakeholders to better monitor La Réunion Island’s reef state of health and to improve management plans.

Eight‐month‐old blocks of the coral Porites lobata colonized by natural Hawaiian euendolithic and epilithic communities were experimentally exposed to two different aqueous pCO2 treatments, 400 ppmv and 750 ppmv, for 3 months. The chlorophyte Ostreobium quekettii dominated communities at the start and at the end of the experiment (65–90%). There were no significant differences in the relative abundance of euendolithic species, nor were there any differences in bioeroded area at the surface of blocks (27%) between pCO2 treatments. The depth of penetration of filaments of O. quekettii was, however, significantly higher under 750 ppmv (1.4 mm) than under 400 ppmv (1 mm). Consequently, rates of carbonate dissolution measured under elevated pCO2 were 48% higher than under ambient pCO2 (0.46 kg CaCO3 dissolved m−2 a−1 versus 0.31 kg m−2 a−1). Thus, biogenic dissolution of carbonates by euendoliths in coral reefs may be a dominant mechanism of carbonate dissolution in a more acidic ocean.

Tribollet A.D., Schils T. and Vroom P.S. 2010. Spatio-temporal variability in macroalgal assemblages of American Samoa. Phycologia 49: 574-591. DOI: 10.2216/09-63.1 Spatial and temporal variability of relative abundance of macroalgae at the genus and functional group levels was examined at 14 m depth across the six islands of American Samoa between 2004 and 2006. Diversity of common macroalgae was high with 54 taxa (50 genera and four algal functional groups) identified from sampled quadrats. The highest taxon richness (33) was found at the largest island, Tutuila. Crustose coralline algae, mixed turf algal assemblages, and the chlorophyte Halimeda were ubiquitous across all islands. Other algal genera or functional groups were, however, representative of specific areas. For instance, the chlorophyte Microdictyon was only found at Rose Atoll and Swains Island (the only low open-ocean atoll systems examined). Similarly, the siphonous green alga Rhipilia only occurred at Swains Island, where it was very abundant. Multivariate analyses revealed that macroalgal assemblages differed significantly among sites around a single island and among islands. All islands were significantly different from each other with Swains Islands having the most important dissimilarity with other islands. We hypothesize that Swains Island differs from the other islands because of its geographic isolation. Statistical analyses also highlighted significant differences in the relative abundance of macroalgae between years. The interaction between spatial and temporal variability was also significant, indicating that temporal changes in algal assemblages are island dependant, and spatial differences among islands are a function of the year in which surveys were conducted. Changes in algal assemblages between the 2004 and 2006 surveys were apparent for all islands except Swains Island and Tutuila, probably because of intense cyclone activity in the region during 2005 (Cyclone Olaf). This study contributes to the overall understanding of coral reef diversity and function in American Samoa and forms a baseline for future algal monitoring surveys.