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In Europe, forest management has controlled forest dynamics to sustain commodity production over multiple centuries. Yet over-regulation for growth and yield diminishes resilience to environmental stress as well as threatens biodiversity, leading to increasing forest susceptibility to an array of disturbances. These trends have stimulated interest in alternative management systems, including natural dynamics silviculture (NDS). NDS aims to emulate natural disturbance dynamics at stand and landscape scales through silvicultural manipulations of forest structure and landscape patterns. We adapted a \"Comparability Index\" (CI) to assess convergence/divergence between natural disturbances and forest management effects. We extended the original CI concept based on disturbance size and frequency by adding the residual structure of canopy trees after a disturbance as a third dimension. We populated the model by compiling data on natural disturbance dynamics and management from 13 countries in Europe, covering four major forest types (i.e., spruce, beech, oak, and pine-dominated forests). We found that natural disturbances are highly variable in size, frequency, and residual structure, but European forest management fails to encompass this complexity. Silviculture in Europe is skewed toward even-aged systems, used predominately (72.9% of management) across the countries assessed. The residual structure proved crucial in the comparison of natural disturbances and silvicultural systems. CI indicated the highest congruence between uneven-aged silvicultural systems and key natural disturbance attributes. Even so, uneven-aged practices emulated only a portion of the complexity associated with natural disturbance effects. The remaining silvicultural systems perform poorly in terms of retention compared to tree survivorship after natural disturbances. We suggest that NDS can enrich Europe's portfolio of management systems, for example where wood production is not the primary objective. NDS is especially relevant to forests managed for habitat quality, risk reduction, and a variety of ecosystem services. We suggest a holistic approach integrating NDS with more conventional practices.

The greatest known global response of lakes to climate change has been an increase in water temperatures. The responses of many lake fishes to warming water temperatures are projected to be inadequate to counter the speed and magnitude of climate change. We experimentally evaluated the responses of embryos from a group of cold, stenothermic fishes (Salmonidae Coregoninae) to increased incubation temperatures. Study groups included cisco (Coregonus artedi) from lakes Superior and Ontario (USA), and vendace (C. albula) and European whitefish (C. lavaretus) from Lake Southern Konnevesi (Finland). Embryos from artificial crossings were incubated at water temperatures of 2.0, 4.5, 7.0, and 9.0°C, and their responses were quantified for developmental and morphological traits. Embryo survival, incubation period, and length-at-hatch were inversely related to incubation temperature whereas yolk-sac volume increased with incubation temperature within study groups. However, varying magnitudes of responses among study groups suggested differential levels of developmental plasticity to climate change. Differential levels of parental effects indicate genetic diversity may enable all study groups to adapt to cope with some degree of changing environmental conditions. Our results suggest that the coregonines sampled within and among systems may have a wide range of embryo responses to warming incubation conditions.

Nonsense-mediated mRNA decay (NMD) is an mRNA surveillance mechanism that plays integral roles in eliminating mRNAs with premature termination codons to prevent the synthesis of truncated proteins that could be pathogenic. One response to the accumulation of detrimental proteins is apoptosis, which involves the activation of enzymatic pathways leading to protein and nucleic acid cleavage and culminating in cell death. It is not clear whether NMD is required to ensure the accurate expression of apoptosis genes or is no longer necessary since cytotoxic proteins are not an issue during cell death. The present study shows that caspases cleave the two NMD factors UPF1 and UPF2 during apoptosis impairing NMD. Our results demonstrate a new regulatory pathway for NMD that occurs during apoptosis and provide evidence for role of the UPF cleaved fragments in apoptosis and NMD inhibition.

Artificial sweeteners are highly sweet, non-nutritive compounds that have become increasingly popular over recent decades despite research suggesting that their consumption has unintended consequences. Specifically, there is evidence suggesting that some of these chemicals interact with bitter taste receptors, implying that sweeteners likely generate complex chemosensory signals. Here, we report the basic sensory characteristics of sweeteners in Drosophila, a common model system used to study the impacts of diet, and find that all noncaloric sweeteners inhibited appetitive feeding responses at higher concentrations. At a cellular level, we found that sucralose and rebaudioside A co-activated sweet and bitter gustatory receptor neurons (GRNs), two populations that reciprocally impact feeding behavior, while aspartame only activated bitter cells. We assessed the behavioral impacts of sweet and bitter co-activation and found that low concentrations of sucralose signal appetitive feeding while high concentrations signal feeding aversion. Finally, silencing bitter GRNs reduced the aversive signal elicited by high concentrations of sucralose and significantly increased sucralose feeding behaviors. Together, we conclude that artificial sweeteners generate a gustatory signal that is more complex than “sweetness” alone, and this bitter co-activation has behaviorally relevant effects on feeding that may help flies flexibly respond to these unique compounds.

The reintegration of crop and livestock systems within the same land area has the potential to improve soil quality and reduce water and air pollution, while maintaining high yields and reducing risk. In this study, we characterize the degree to which federal policies in three major global food production regions that span a range of socioeconomic contexts, Brazil, New Zealand, and the United States, incentivize or disincentivize the use of integrated crop and livestock practices (ICLS). Our analysis indicates that Brazil and New Zealand have the most favorable policy environment for ICLS, while the United States provides the least favorable environment. The balance of policy incentives and disincentives across our three cases studies mirrors current patterns of ICLS usage. Brazil and New Zealand have both undergone a trend toward mixed crop livestock systems in recent years, while the United States has transitioned rapidly toward continuous crop and livestock production. If transitions to ICLS are desired, particularly in the United States, it will be necessary to change agricultural, trade, environmental, biofuels, and food safety policies that currently buffer farmers from risk, provide too few incentives for pollution reduction, and restrict the presence of animals in crop areas. It will also be necessary to invest more in research and development in all countries to identify the most profitable ICLS technologies in each region.

The microRNAs (miRNAs) function as global negative regulators of gene expression and have been associated with a multitude of biological processes. The dysfunction of the microRNAome has been linked to various diseases including cancer. Our laboratory recently reported modulation in the expression of miRNA in a variety of cell types exposed to ionizing radiation (IR). To further understand miRNA role in IR-induced stress pathways, we catalogued a set of common miRNAs modulated in various irradiated cell lines and generated a list of predicted target genes. Using advanced bioinformatics tools we identified cellular pathways where miRNA predicted target genes function. The miRNA-targeted genes were found to play key roles in previously identified IR stress pathways such as cell cycle, p53 pathway, TGF-beta pathway, ubiquitin-mediated proteolysis, focal adhesion pathway, MAPK signaling, thyroid cancer pathway, adherens junction, insulin signaling pathway, oocyte meiosis, regulation of actin cytoskeleton, and renal cell carcinoma pathway. Interestingly, we were able to identify novel targeted pathways that have not been identified in cellular radiation response, such as aldosterone-regulated sodium reabsorption, long-term potentiation, and neutrotrophin signaling pathways. Our analysis indicates that the miRNA interactome in irradiated cells provides a platform for comprehensive modeling of the cellular stress response to IR exposure.

The regulation of gene expression in the oral pathogen Aggregatibacter actinomycetemcomitans is still not fully elucidated. ArcAB is a two-component system which allows facultative anaerobic bacteria to sense various respiratory growth conditions and adapt their gene expression accordingly. This study investigated in A. actinomycetemcomitans the role of arcB on the regulation of biofilm formation, adhesion to saliva coated hydroxyapatite (SHA) and the hydrophobic properties of the cell. These phenotypic traits were determined for an A. actinomycetemcomitansarcB deficient type and a wild type strain. Differences in hydrophobic properties were shown at early and late exponential growth phases under microaerobic incubation and at late exponential phase under anaerobiosis. The arcB mutant formed less biofilm than the wild type strain when grown under anaerobic incubation, but displayed higher biofilm formation activity under microaerobic conditions. The adherence to SHA was significantly lower in the mutant when compared with the wild type strain. These results suggest that the transmembrane sensor kinase arcB, in A. actinomycetemcomitans, senses redox growth conditions and regulates the expression of surface components of the bacterial cell related to biofilm formation and adhesion to saliva coated surfaces. A regulação da expressão gênica do patógeno oral Aggregatibacter actinomycetemcomitans não está completamente descrita. O sistema de dois componentes ArcAB permite que bactérias anaeróbias facultativas percebam diferenças nas condições respiratórias durante sua multiplicação e adaptem a expressão de genes à estas condições. Este estudo investigou em A. actinomycetemcomitans o papel de arcB na regulação da formação de biofilme, aderência à hidroxiapatita recoberta por saliva (SHA) e nas propriedades hidrofóbicas celulares. Estas características fenotípicas foram determinadas para uma linhagem de A. actinomycetemcomitans deficiente em arcB e para uma linhagem selvagem. Foram observadas diferenças nas propriedades hidrofóbicas entre as linhagens quando estas foram cultivadas em ambiente microaerófilo até início e final de fase exponencial e quando foram cultivadas em ambiente anaeróbio até final de fase exponencial. A linhagem arcB mutante formou menos biofilme do que a linhagem selvagem quando estas foram cultivadas sob incubação anaeróbica, porém, apresentou maior formação de biofilme quando a incubação foi realizada em condições de microaerofilia. A aderência à SHA apresentada pela linhagem mutante foi significantemente menor do que a observada pela linhagem selvagem. Estes estudos sugerem que a quinase sensora arcB, em A. actinomycetemcomitans, percebe as condições redox de multiplicação e regula a expressão de componentes de superfície bacterianos relacionados à formação de biofilme e adesão a superfícies recobertas com saliva.

As high latitudes warm, vast stocks of carbon and nitrogen stored in permafrost will become available for transport to aquatic ecosystems. While there is a growing understanding of the potential effects of permafrost collapse (thermokarst) on aquatic biogeochemical cycles, neither the spatial extent nor temporal duration of these effects is known. To test hypotheses concerning patterns and persistence of elemental export from upland thermokarst, we sampled hydrologic outflow from 83 thermokarst features in various stages of development across the North Slope of Alaska. We hypothesizedthat an initial pulse of carbon and nutrients would be followed by a period of elemental retention during feature recovery, and that the duration of these stages would depend on feature morphology. Thermokarst caused substantial increases in dissolved organic carbon a water chemistry differed by feature type and secondarily by landscape age. Most solutes returned to undisturbed concentrations after feature stabilization, but elevated dissolved carbon, inorganic nitrogen, and sulfate concentrations persisted through stabilization for some feature types, suggesting that aquatic disturbance by thermokarst for these solutes is longlived. Dissolved methane decreased by 90% for most feature types, potentially due to high concentrations of sulfateand inorganic nitrogen. Spatial patterns of carbon and nutrient export from thermokarst suggest that upland thermokarstmay be a dominant linkage transferring carbon and nutrients from terrestrial to aquatic ecosystems as the Arctic warms.

Forested wetlands are an important carbon (C) sink. Fine roots (diameter < 2 mm) dominate belowground C cycling and can be functionally defined into absorptive roots (order 1–2) and transport roots (order ≥ 3). However, effects of microtopography on the function-based fine root dynamics in forested wetlands are poorly understood. We studied fine root biomass allocation and biomass, necromass, mass loss rate, production, mortality and decomposition of absorptive and transport roots in hummocks and hollows in a coastal plain freshwater forested wetland (FFW) in the southeastern USA using dynamic-flow method. Biomass ratios of first- to second-order roots and absorptive to transport roots and the biomass and necromass of absorptive and transport roots were significantly higher in top 0–10 cm organic peat layer than in 10–20 cm muck and mineral layer, and were significantly higher in hummocks than in hollows. The mass loss rate, production, mortality and decomposition were significantly higher in hummocks than in hollows. Absorptive roots did not have a lower mass loss rate than transport roots. Microtopography significantly affected the contributions of absorptive and transport roots to the total production, mortality and decomposition. Production, mortality and decomposition of absorptive roots were higher than those of transport roots in hummocks but lower than those of transport roots in hollows. Total (hummocks plus hollows) fine root production, mortality and decomposition were 455 ± 106 g m−2 y−1, 475 ± 79 g m−2 y−1 and 392 ± 60 g m−2 y−1, respectively. Greater mortality than decomposition resulted in net fine root C input to soil. The observed microtopographic controls on fine root dynamics have great implications for soil C cycling. As sea level rises, the relative area of hollows in coastal plain FFWs will increase, causing a decrease in fine root mass loss rate, biomass, production, mortality and decomposition and it is the balance of these processes that will determine future soil C storage and cycling.