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"Utteridge, Timothy M. A."
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Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history
2023
Herbarium collections are an important source of dated, identified and preserved DNA, whose use in comparative genomics and phylogeography can shed light on the emergence and evolutionary history of plant pathogens. Here, we reconstruct 13 historical genomes of the bacterial crop pathogen
Xanthomonas citri
pv.
citri
(
Xci
) from infected
Citrus
herbarium specimens. Following authentication based on ancient DNA damage patterns, we compare them with a large set of modern genomes to estimate their phylogenetic relationships, pathogenicity-associated gene content and several evolutionary parameters. Our results indicate that
Xci
originated in Southern Asia ~11,500 years ago (perhaps in relation to Neolithic climate change and the development of agriculture) and diversified during the beginning of the 13th century, after
Citrus
diversification and before spreading to the rest of the world (probably via human-driven expansion of citriculture through early East-West trade and colonization).
Herbarium collections are an important source of historical DNA, whose analysis can shed light on the evolutionary history of plant pathogens. Here, Campos et al. reconstruct historical genomes of the bacterial crop pathogen
Xanthomonas citri
pv.
citri
from citrus herbarium specimens, estimating that the pathogen originated in Southern Asia ~11,500 years ago and diversified during the beginning of the 13
th
century.
Journal Article
Maesa flabellifera (Primulaceae), a new species from southeast Yunnan, China
2024
Maesa flabellifera (Primulaceae-Maesoideae) from southeast Yunnan, China, is described and illustrated here. This new species belongs to the informal long corolla-tube species group and is morphologically similar to M. permollis and M. kurzii , but can be distinguished by lacking hairs, membranaceous leaves and long panicles with 7−16 branches. According to the IUCN criteria, M. flabellifera is assessed as “Least Concern”.
Journal Article
Ardisia recurvipetala (Primulaceae-Myrsinoideae), a new species from northern Peninsular Malaysia
by
Julius, Avelinah
,
Utteridge, Timothy M. A.
,
Siti-Munirah, Mat Yunoh
in
Ardisia
,
Botany
,
Conservation status
2023
Recent fieldwork in Terengganu, Peninsular Malaysia, resulted in the collection of an endemic new species of Ardisia , described here as Ardisia recurvipetala Julius, Siti-Munirah & Utteridge. The species is a member of subgenus (§) Crispardisia on account of its vascularised glands (bacterial nodules) on the leaf margin and the terminal inflorescence on a specialised lateral branch subtended by a normal leaf (rather than a reduced bract-like leaf). Ardisia recurvipetala is unique amongst all members of § Crispardisia by having leaf margins with both vascularised glands and pustule-like structures and can be further distinguished from other Peninsular Malaysian members of this subgenus by the lamina raised between the leaf venation giving a somewhat bullate appearance, unbranched inflorescences, brownish-red pedicels and recurved corolla lobes, each with a creamy-white apex and a small pink patch at the base. Ardisia recurvipetala is known only from a single location in Terengganu and its conservation status is assessed as Data Deficient (DD).
Journal Article
Ardisia krauensis, a new species of Primulaceae (Myrsinoideae) from Peninsular Malaysia
by
Julius, Avelinah
,
Syahida-Emiza, Suhaimi
,
Utteridge, Timothy M. A.
in
Ardisia
,
Botany
,
flower color
2023
Ardisia krauensis , a new species of Primulaceae from Peninsular Malaysia, is described and illustrated. The new species is assignable into subgenus (§) Pyrgus on account of specialised lateral reproductive branches bearing a terminal inflorescence subtended by foliose bracts. Morphologically, the new species mostly resembles Ardisia rigida in having elliptic leaves. However, the new species can be distinguished by the combination of its lateral veins number, the inflorescence branching pattern, the rachis and flower colour, and the stigma shape. Ardisia krauensis is found in an entirely protected habitat, thus, it is assessed as Least Concern (LC).
Journal Article
International collaboration between collections‐based institutes for halting biodiversity loss and unlocking the useful properties of plants and fungi
by
Sharrock, Suzanne
,
Couch, Charlotte
,
Morim, Marli P.
in
agaricales
,
basidiomycota
,
Biodiversity
2020
The United Nations' Sustainable Development Goal (SDG) 17 calls for “strong global partnerships and cooperation” to support the other SDGs. The collections‐based science community offers many examples of conservation of plant and fungal biodiversity, sharing, repatriation and aggregation of data, access to new technologies, supply of plant and fungal material, strengthening capacity of practitioners, and benefit sharing with the providers of biodiversity and genetic resources. Collaboration framed by workable multilateral treaties will increase our understanding of plant and fungal diversity, help halt biodiversity loss, and accelerate our sustainable use of plants and fungi and the exploration of their useful traits. Societal Impact Statement The United Nations' Sustainable Development Goal (SDG) 17 calls for “strong global partnerships and cooperation” to support the other SDGs. The collections‐based science community offers many examples of conservation of plant and fungal biodiversity, sharing, repatriation and aggregation of data, access to new technologies, supply of plant and fungal material, strengthening capacity of practitioners, and benefit sharing with the providers of biodiversity and genetic resources. Collaboration framed by workable multilateral treaties will increase our understanding of plant and fungal diversity, help halt biodiversity loss, and accelerate our sustainable use of plants and fungi and the exploration of their useful traits. Summary Collections‐based institutes are at the forefront of generating knowledge and understanding of plant and fungal biodiversity. Through the analysis of occurrence data, the use of modern technologies to better understand the evolutionary relationships between species and documentation of their useful properties, the work of collections‐based institutes provides good models for conservation; addressing species loss and improving sustainable use of plants and fungi. Nevertheless, the pressure on the planet's plant and fungal diversity is relentless. We argue that a massive increase in the accessibility of preserved and living collections of plants and fungi is required. An increased scale of responsible exploration to both conserve and unlock the useful properties of plants and fungi is needed to deliver solutions to the many global challenges facing humanity and the planet. This article explores the role of collaborations between collections‐based institutes and their partners in preventing biodiversity loss and delivering sustainable development. Drawing on examples from herbaria, agricultural and wild species genebanks, mycological collections, an international NGO, and the botanic garden community, we demonstrate how collaboration improves efficiency and impact. Collaborations can be peer to peer, institutional, governmental, national, or international, they may involve work with local communities and are frequently a combination of these. We suggest the five key benefits to collaboration and show that with trust, understanding, and mutual respect, powerful and sustainable partnerships develop. Such trust and respect are hard won, but once established, sustain a high level of commitment, enable development of shared long‐term visions of success, and attract diverse funding streams.
Journal Article
Environment‐dependent influence of fruit size upon the distribution of the Malesian archipelagic flora
by
Riwu‐Kaho, Michael
,
Trias‐Blasi, Anna
,
Trethowan, Liam A.
in
Archipelagoes
,
Bayesian analysis
,
biogeography
2023
Societal Impact Statement We found evidence that larger fruited plant species are more likely to be found in aseasonal wet areas of Malesia. These areas are likely to be impacted by increasing human encroachment, which threatens both large‐fruited species and the large fauna that are most likely responsible for their dispersal. This synergistic threat could drive the loss of fruit‐crop relatives that potentially have key traits for resilient fruit crops of the future. Summary It is unclear how fruit size determines distributions of megadiverse tropical flora. Energetic constraints of ecosystems suggest plant species with larger fruit should be found in the higher productivity, aseasonal wet tropics. However, the probability of seed dispersal over large scales should be increased by fruits being smaller, due to being available to a greater number of dispersal agents. We use a Bayesian phylogenetic model of species occurrence for >3400 species in Malesia to test how fruit size and environment interact to determine species distributions across the archipelago. We show that larger fruited species are more likely to occur in aseasonal wet areas. We also found that smaller fruit size was associated with species occurrence in more mountainous areas. Fruit size interacts with environmental variables to shape plant distributions across the megadiverse Malesian islands. The evolutionary processes that influence the patterns we have observed require further examination. We found evidence that larger fruited plant species are more likely to be found in aseasonal wet areas of Malesia. These areas are likely to be impacted by increasing human encroachment, which threatens both large‐fruited species and the large fauna that are most likely responsible for their dispersal. This synergistic threat could drive the loss of fruit‐crop relatives that potentially have key traits for resilient crops of the future.
Journal Article
A Bird’s Eye View of the Systematics of Convolvulaceae: Novel Insights From Nuclear Genomic Data
by
Eserman, Lauren A.
,
Forest, Félix
,
Maurin, Olivier
in
Angiosperms353
,
Chloroplasts
,
Classification
2022
Convolvulaceae is a family of c. 2,000 species, distributed across 60 currently recognized genera. It includes species of high economic importance, such as the crop sweet potato ( Ipomoea batatas L.), the ornamental morning glories ( Ipomoea L.), bindweeds ( Convolvulus L.), and dodders, the parasitic vines ( Cuscuta L.). Earlier phylogenetic studies, based predominantly on chloroplast markers or a single nuclear region, have provided a framework for systematic studies of the family, but uncertainty remains at the level of the relationships among subfamilies, tribes, and genera, hindering evolutionary inferences and taxonomic advances. One of the enduring enigmas has been the relationship of Cuscuta to the rest of Convolvulaceae. Other examples of unresolved issues include the monophyly and relationships within Merremieae, the “bifid-style” clade (Dicranostyloideae), as well as the relative positions of Erycibe Roxb. and Cardiochlamyeae. In this study, we explore a large dataset of nuclear genes generated using Angiosperms353 kit, as a contribution to resolving some of these remaining phylogenetic uncertainties within Convolvulaceae. For the first time, a strongly supported backbone of the family is provided. Cuscuta is confirmed to belong within family Convolvulaceae. “Merremieae,” in their former tribal circumscription, are recovered as non-monophyletic, with the unexpected placement of Distimake Raf. as sister to the clade that contains Ipomoeeae and Decalobanthus Ooststr., and Convolvuleae nested within the remaining “Merremieae.” The monophyly of Dicranostyloideae, including Jacquemontia Choisy, is strongly supported, albeit novel relationships between genera are hypothesized, challenging the current tribal delimitation. The exact placements of Erycibe and Cuscuta remain uncertain, requiring further investigation. Our study explores the benefits and limitations of increasing sequence data in resolving higher-level relationships within Convolvulaceae, and highlights the need for expanded taxonomic sampling, to facilitate a much-needed revised classification of the family.
Journal Article
Metal-rich soils increase tropical tree stoichiometric distinctiveness
by
Kintamani, Endang
,
Utteridge, Timothy M. A.
,
Girmansyah, Deden
in
Aluminum
,
Biomedical and Life Sciences
,
Chromium
2021
Background and aims
Ultramafic soils have high metal concentrations, offering a key opportunity to understand if such metals are strong predictors of leaf stoichiometry. This is particularly relevant for tropical forests where large knowledge gaps exist.
Methods
On the tropical island of Sulawesi, Indonesia, we sampled forests on sand, limestone, mafic and ultramafic soils that present a range of soil metal concentrations. We asked how variation in 12 soil elements (metals and macronutrients) influenced leaf stoichiometry and whether stoichiometric distinctiveness (the average difference between a species and all others in a multivariate space, the axes of which are the concentrations of each leaf element) is influenced by increasing soil metal concentrations.
Results
Positive correlations between corresponding elements in soils and leaves were only found for Ca and P. Noticeably, soil Cr had a negative effect upon leaf P. Whilst most species had low stoichiometric distinctiveness, some species had greater distinctiveness on stressful metal-rich ultramafic soils, generally caused by the accumulation of Al, Co, Cr or Ni.
Conclusions
Our observation of increased stoichiometric distinctiveness in tropical forests on ultramafic soils indicates greater niche differentiation, and contrasts with the assumption that stressful environments remove species with extreme phenotypes.
Journal Article
An enigmatic genus on an enigmatic island
by
Rosmarlinasiah
,
Lewis, Gwilym P.
,
Arif, Asrianti
in
biome switching
,
Dialioideae
,
edaphic niche conservatism
2019
Journal Article
Maesaflabellifera (Primulaceae), a new species from southeast Yunnan, China
2024
(Primulaceae-Maesoideae) from southeast Yunnan, China, is described and illustrated here. This new species belongs to the informal long corolla-tube species group and is morphologically similar to
and
, but can be distinguished by lacking hairs, membranaceous leaves and long panicles with 7-16 branches. According to the IUCN criteria,
is assessed as \"Least Concern\".
Journal Article