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result(s) for
"Van Horn, Monica"
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What would Adam Smith have on his iPod?
2013
In this article, the authors examine two ways that they use music (i.e., popular song lyrics) as an active learning technique in an undergraduate history of economic thought course. First, they use music to help students grasp the ideas of the great thinkers in economics and see their relevance today. Second, because they require students to read original texts and write thesis-driven essays, they use music to teach essential skills related to such assignments. While the article focuses on how they use music as a pedagogical device to teach the history of economic thought, the use of music to teach essential skills could be applied to any economics course in which students engage in higher-level reading and writing.
Journal Article
The ARID1B spectrum in 143 patients: from nonsyndromic intellectual disability to Coffin–Siris syndrome
by
Baban, Anwar
,
Pottinger, Caroline
,
Martinez, Francisco
in
Abnormalities, Multiple - genetics
,
Adolescent
,
Adult
2019
Purpose
Pathogenic variants in ARID1B are one of the most frequent causes of intellectual disability (ID) as determined by large-scale exome sequencing studies. Most studies published thus far describe clinically diagnosed Coffin–Siris patients (ARID1B-CSS) and it is unclear whether these data are representative for patients identified through sequencing of unbiased ID cohorts (ARID1B-ID). We therefore sought to determine genotypic and phenotypic differences between ARID1B-ID and ARID1B-CSS. In parallel, we investigated the effect of different methods of phenotype reporting.
Methods
Clinicians entered clinical data in an extensive web-based survey.
Results
79 ARID1B-CSS and 64 ARID1B-ID patients were included. CSS-associated dysmorphic features, such as thick eyebrows, long eyelashes, thick alae nasi, long and/or broad philtrum, small nails and small or absent fifth distal phalanx and hypertrichosis, were observed significantly more often (
p
< 0.001) in ARID1B-CSS patients. No other significant differences were identified.
Conclusion
There are only minor differences between ARID1B-ID and ARID1B-CSS patients. ARID1B-related disorders seem to consist of a spectrum, and patients should be managed similarly. We demonstrated that data collection methods without an explicit option to report the absence of a feature (such as most Human Phenotype Ontology-based methods) tended to underestimate gene-related features.
Journal Article
Correction: The ARID1B spectrum in 143 patients: fromnonsyndromic intellectual disability to Coffin–Siris syndrome
2019
The original version of this Article contained an error in the spelling of the author Pleuntje J. van der Sluijs, which was incorrectly given as Eline (P. J.) van der Sluijs. This has now been corrected in both the PDF and HTML versions of the Article.
Journal Article
Correction: The ARID1B spectrum in 143 patients: from nonsyndromic intellectual disability to Coffin–Siris syndrome
by
Baban, Anwar
,
Pottinger, Caroline
,
Martinez, Francisco
in
Biomedical and Life Sciences
,
Biomedicine
,
Correction
2019
The original version of this Article contained an error in the spelling of the author Pleuntje J. van der Sluijs, which was incorrectly given as Eline (P. J.) van der Sluijs. This has now been corrected in both the PDF and HTML versions of the Article.
Journal Article
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
by
Colella, Stefano
,
Poelchau, Monica F
,
Jacobs, Chris Gc
in
Copy number
,
Feeding
,
Gene expression
2018
Background: The Hemiptera (aphids, cicadas, and true bugs) are a key insect order, with high diversity for feeding ecology and excellent experimental tractability for molecular genetics. Building upon recent sequencing of hemipteran pests such as phloem-feeding aphids and blood-feeding bed bugs, we present the genome sequence and comparative analyses centered on the milkweed bug Oncopeltus fasciatus, a seed feeder of the family Lygaeidae. Results: The 926-Mb Oncopeltus genome is well represented by the current assembly and official gene set. We use our genomic and RNA-seq data not only to characterize the protein-coding gene repertoire and perform isoform-specific RNAi, but also to elucidate patterns of molecular evolution and physiology. We find ongoing, lineage-specific expansion and diversification of repressive C2H2 zinc finger proteins. The discovery of intron gain and turnover specific to the Hemiptera also prompted evaluation of lineage and genome size as predictors of gene structure evolution. Furthermore, we identify enzymatic gains and losses that correlate with feeding biology, particularly for reductions associated with derived, fluid-nutrition feeding. Conclusions: With the milkweed bug, we now have a critical mass of sequenced species for a hemimetabolous insect order and close outgroup to the Holometabola, substantially improving the diversity of insect genomics. We thereby define commonalities among the Hemiptera and delve into how hemipteran genomes reflect distinct feeding ecologies. Given Oncopeltus's strength as an experimental model, these new sequence resources bolster the foundation for molecular research and highlight technical considerations for the analysis of medium-sized invertebrate genomes. Footnotes * There are two major updates to the Oncopeltus genome manuscript. Firstly, revised and extended analyses of the assembly and OGS now demonstrate that it is comparable in quality to the published genomes of other hemipterans that form the basis for many of our comparative findings. The originally poor values specifically for the BUSCO analyses had resulted from incorrectly using an outdated version (v.1) of the pipeline that was not appropriate for hemimetabolous insects. We apologize for this oversight. We have fully re-run these analyses with the latest version (v.3), showing that the missing fraction of BUSCO genes is only 2%, not 19%, in the assembly. We then extended both BUSCO and OrthoDB approaches to further address OGS completeness and copy number. This is primarily documented in the main text results associated with new Figure 3b and in the updated Supplemental Note 6.1. Secondly, we have extended our RNA-seq analyses across hemimetabolous life history stages to assess stage-specific enrichment in Oncopeltus and to compare Oncopeltus with four other hemipteroid species, using stringent statistical criteria to identify sex-specific gene expression associated with reproductive biology. These new analyses strengthen and extend the originally reported findings. This is documented in the main text results associated with new Figure 2c and in the new Supplemental Note 2.4. The text has also been shortened for clarity.