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Nucleoporin TPR is an integral component of the TREX-2 mRNA export pathway
Nuclear pore complexes (NPCs) are important for cellular functions beyond nucleocytoplasmic trafficking, including genome organization and gene expression. This multi-faceted nature and the slow turnover of NPC components complicates investigations of how individual nucleoporins act in these diverse processes. To address this question, we apply an
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uxin-
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nduced
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egron (AID) system to distinguish roles of basket nucleoporins NUP153, NUP50 and TPR. Acute depletion of TPR causes rapid and pronounced changes in transcriptomic profiles. These changes are dissimilar to shifts observed after loss of NUP153 or NUP50, but closely related to changes caused by depletion of mRNA export receptor NXF1 or the GANP subunit of the TRanscription-EXport-2 (TREX-2) mRNA export complex. Moreover, TPR depletion disrupts association of TREX-2 subunits (GANP, PCID2, ENY2) to NPCs and results in abnormal RNA transcription and export. Our findings demonstrate a unique and pivotal role of TPR in gene expression through TREX-2- and/or NXF1-dependent mRNA turnover.
mRNAs export from the nucleus is thought to be regulated in part by three nucleoporins that comprise the nuclear basket, but whether and how distinct basket nucleoporins interact with the RNA export machinery is unclear. Here, the authors use rapid auxin-mediated degradation of basket nucleoporins Nup153, Nup50, and Tpr, and see that Tpr interacts with the TREX-2 mRNA export complex.
Journal Article
Mapping paths through the nuclear pore complex
Nuclear pore complexes (NPCs) facilitate the fast, yet highly selective, nucleocytoplasmic transport of molecules. A recent study describes a multicolour imaging approach to chart the paths for cargo molecules through the human NPC with real-time 3D visualization of nucleocytoplasmic transport events with high spatial and temporal precision.
Journal Article
Characterization of Phenolic Compounds and Their Contribution to Sensory Properties of Olive Oil
Olive oil is not only known for its pungent, bitter, and fruity taste, but also for its health potential, which is often hypothesized to depend on its phenolic compounds. One hundred extra virgin olive oil samples (monocultivaric as well as blends of varieties) were assessed with regard to their sensory properties and phenolic compound composition. Nineteen phenolic compounds have been determined and correlated with sensory data. In all olive oil samples, oleocanthal and oleacein were the most abundant phenolic compounds, with average amounts of 77.9 mg/kg and 41.8 mg/kg, respectively. The highest correlation coefficient between a sensory descriptor and the phenolic compounds was found for the bitter taste sensation and the total phenolic content with r = 0.72 and in particular, for 3,4-DHPEA-EA, with r = 0.57. Intensity plots were assessed for the three main sensory descriptors fruitiness, bitterness, pungency, and for the quality factor harmony, which is associated with the degree of ripeness aroma of olive oil. Positive correlations for the aroma descriptors freshly cut grass, leaves, and nuts, and the phenolic compounds were especially observed for oleoside 11-methylester and vanillic acid. The present study provides a comprehensive database of phenolic compounds in olive oils from six different varieties and seven countries.
Journal Article
Transformation of daily food practices of indigenous peoples of Taimyr through the prism of environmental change
This paper presents the results of a trip to the Krasnoyarsk Krai in the spring of 2021. The work was carried out in the cities of Dudinka, Norilsk and in the settlements of Ust-Avam, Volochanka, Levinsky Peski of the Taimyr Dolgan-Nenets municipal district of the Krasnoyarsk Krai. The main purpose of the study was to examine the transformation of the food system of the residents of the above-mentioned settlements, as well as to consider the problem of delivery of goods and their transportation to these remote settlements, and the impact of these difficulties on the life and economy of local residents. Environmental changes are also an important factor in the formation of local food resources. Their influence plays one of the main roles in the self-sufficiency of the peninsula residents in food supply. The work was conducted with various categories of the population: people of different ages, men and women, hunters, fishermen, hunters, reindeer breeders, representatives of the administration, employees of trading companies and people employed in the sphere of educational field.
Journal Article
Coelenterazine-Dependent Luciferases as a Powerful Analytical Tool for Research and Biomedical Applications
The functioning of bioluminescent systems in most of the known marine organisms is based on the oxidation reaction of the same substrate—coelenterazine (CTZ), catalyzed by luciferase. Despite the diversity in structures and the functioning mechanisms, these enzymes can be united into a common group called CTZ-dependent luciferases. Among these, there are two sharply different types of the system organization—Ca2+-regulated photoproteins and luciferases themselves that function in accordance with the classical enzyme–substrate kinetics. Along with deep and comprehensive fundamental research on these systems, approaches and methods of their practical use as highly sensitive reporters in analytics have been developed. The research aiming at the creation of artificial luciferases and synthetic CTZ analogues with new unique properties has led to the development of new experimental analytical methods based on them. The commercial availability of many ready-to-use assay systems based on CTZ-dependent luciferases is also important when choosing them by first-time-users. The development of analytical methods based on these bioluminescent systems is currently booming. The bioluminescent systems under consideration were successfully applied in various biological research areas, which confirms them to be a powerful analytical tool. In this review, we consider the main directions, results, and achievements in research involving these luciferases.
Journal Article
Positive and negative facial valence perception are modulated differently by eccentricity in the parafovea: Replication from KDEF to NimStim
While perceiving the emotional state of others may be crucial for our behavior even when this information is present outside of central vision, emotion perception studies typically focus on central visual field. We have recently investigated emotional valence (pleasantness) perception across the parafovea (≤ 4°) and found that for briefly presented (200 ms) emotional face images (from the established KDEF image-set), positive (happy) valence was the least affected by eccentricity (distance from the central visual field) and negative (fearful) valence the most. Furthermore, we found that performance at 2° predicted performance at 4°. Here we tested (n = 37) whether these effects replicate with face stimuli of different identities from a different well-established image-set (NimStim). All our prior findings replicated and eccentricity-based modulation magnitude was smaller with NimStim (~ 16.6% accuracy reduction at 4°) than with KDEF stimuli (~ 27.3% reduction). Our current investigations support our earlier findings that for briefly presented parafoveal stimuli, positive and negative valence perception are differently affected by eccentricity and may be dissociated. Furthermore, our results highlight the importance of investigating emotions beyond central vision and demonstrate commonalities and differences across different image sets in the parafovea, emphasizing the contribution of replication studies to substantiate our knowledge about perceptual mechanisms.
Journal Article
Obsessive–compulsive symptoms and information seeking during the Covid-19 pandemic
Increased mental-health symptoms as a reaction to stressful life events, such as the Covid-19 pandemic, are common. Critically, successful adaptation helps to reduce such symptoms to baseline, preventing long-term psychiatric disorders. It is thus important to understand whether and which psychiatric symptoms show transient elevations, and which persist long-term and become chronically heightened. At particular risk for the latter trajectory are symptom dimensions directly affected by the pandemic, such as obsessive–compulsive (OC) symptoms. In this longitudinal large-scale study (N = 406), we assessed how OC, anxiety and depression symptoms changed throughout the first pandemic wave in a sample of the general UK public. We further examined how these symptoms affected pandemic-related information seeking and adherence to governmental guidelines. We show that scores in all psychiatric domains were initially elevated, but showed distinct longitudinal change patterns. Depression scores decreased, and anxiety plateaued during the first pandemic wave, while OC symptoms further increased, even after the ease of Covid-19 restrictions. These OC symptoms were directly linked to Covid-related information seeking, which gave rise to higher adherence to government guidelines. This increase of OC symptoms in this non-clinical sample shows that the domain is disproportionately affected by the pandemic. We discuss the long-term impact of the Covid-19 pandemic on public mental health, which calls for continued close observation of symptom development.
Journal Article
Positive and negative facial valence perception are modulated differently by eccentricity in the parafovea
Understanding whether people around us are in a good, bad or neutral mood can be critical to our behavior, both when looking directly at them or when they are in our peripheral visual field. However, facial expressions of emotions are often investigated at central visual field or at locations right or left of fixation. Here we assumed that perception of facial emotional valence (the emotion’s pleasantness) changes with distance from central visual field (eccentricity) and that different emotions may be influenced differently by eccentricity. Participants (n = 58) judged the valence of emotional faces across the parafovea (≤ 4°, positive (happy), negative (fearful), or neutral)) while their eyes were being tracked. As expected, performance decreased with eccentricity. Positive valence perception was least affected by eccentricity (accuracy reduction of 10–19% at 4°) and negative the most (accuracy reduction of 35–38% at 4°), and this was not a result of speed-accuracy trade-off or response biases. Within-valence (but not across-valence) performance was associated across eccentricities suggesting perception of different valences is supported by different mechanisms. While our results may not generalize to all positive and negative emotions, they indicate that beyond-foveal investigations can reveal additional characteristics of the mechanisms that underlie facial expression processing and perception.
Journal Article