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"Venditti, Chris"
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Percy Jackson and the last Olympian : the graphic novel
\"Most people get presents for their birthday. I get a prophecy that could save or destroy the world... It happens when you're ths son of Poseidon, god of the sea. I turn sixteen, and the fate of existence is all on me. So, no pressure. Now Kronos, Lord of the Titans, is beginning his attack on New York City, and the dreaded monster Typhon is heading our way. The battle for civilization has begun...\"--Back cover.
BOOK
Bantu expansion shows that habitat alters the route and pace of human dispersals
Unlike most other biological species, humans can use cultural innovations to occupy a range of environments, raising the intriguing question of whether human migrations move relatively independently of habitat or show preferences for familiar ones. The Bantu expansion that swept out of West Central Africa beginning ∼5,000 y ago is one of the most influential cultural events of its kind, eventually spreading over a vast geographical area a new way of life in which farming played an increasingly important role. We use a new dated phylogeny of ∼400 Bantu languages to show that migrating Bantu-speaking populations did not expand from their ancestral homeland in a “random walk” but, rather, followed emerging savannah corridors, with rainforest habitats repeatedly imposing temporal barriers to movement. When populations did move from savannah into rainforest, rates of migration were slowed, delaying the occupation of the rainforest by on average 300 y, comparedwith similar migratory movements exclusively within savannah or within rainforest by established rainforest populations. Despite unmatched abilities to produce innovations culturally, unfamiliar habitats significantly alter the route and pace of human dispersals.
Journal Article
The son of Neptune : the graphic novel
In this adaptation of Rick Riordan's novel, demigod Percy Jackson, still with no memory, and his new friends from Camp Jupiter, Hazel and Frank, go on a quest to free Death, but their bigger task is to unite the Greek and Roman camps so that the Prophecy of Seven can be fulfilled.
BOOK
Human frontal lobes are not relatively large
One of the most pervasive assumptions about human brain evolution is that it involved relative enlargement of the frontal lobes. We show that this assumption is without foundation. Analysis of five independent data sets using correctly scaled measures and phylogenetic methods reveals that the size of human frontal lobes, and of specific frontal regions, is as expected relative to the size of other brain structures. Recent claims for relative enlargement of human frontal white matter volume, and for relative enlargement shared by all great apes, seem to be mistaken. Furthermore, using a recently developed method for detecting shifts in evolutionary rates, we find that the rate of change in relative frontal cortex volume along the phylogenetic branch leading to humans was unremarkable and that other branches showed significantly faster rates of change. Although absolute and proportional frontal region size increased rapidly in humans, this change was tightly correlated with corresponding size increases in other areas and whole brain size, and with decreases in frontal neuron densities. The search for the neural basis of human cognitive uniqueness should therefore focus less on the frontal lobes in isolation and more on distributed neural networks.
Journal Article
Percy Jackson and the battle of the labyrinth : the graphic novel
\"Honestly, blowing up another school was the last thing I wanted to do. As the son of a Greek god, I've had my share of near-death disaster--and now my arch-enemy Luke wants to invade our camp via an ancient labyrinth. If he succeeds, thousands of bloodthirsty monsters will attack. So it's 'Goodbye, sunshine; hello, darkness.' as four of us descend into the terrifying underground and beyond...\"--Page 4 of cover.
BOOK
Phylogenetically informed predictions outperform predictive equations in real and simulated data
Inferring unknown trait values is ubiquitous across biological sciences—whether for reconstructing the past, imputing missing values for further analysis, or understanding evolution. Models explicitly incorporating shared ancestry amongst species with both known and unknown values (phylogenetically informed prediction) provide accurate reconstructions. However, 25 years after the introduction of such models, it remains common practice to simply use predictive equations derived from phylogenetic generalised least squares or ordinary least squares regression models to calculate unknown values. Here, we use a comprehensive set of simulations to demonstrate two- to three-fold improvement in the performance of phylogenetically informed predictions compared to both ordinary least squares and phylogenetic generalised least squares predictive equations. We found that phylogenetically informed prediction using the relationship between two weakly correlated (r = 0.25) traits was roughly equivalent to (or even better than) predictive equations for strongly correlated traits (r = 0.75). A critique and comparison of four published predictive analyses showcase real-world examples of phylogenetically informed prediction. We also highlight the importance of prediction intervals, which increase with increasing phylogenetic branch length. Finally, we offer guidelines to making phylogenetically informed predictions across diverse fields such as ecology, epidemiology, evolution, oncology, and palaeontology.
Phylogenetically informed predictions account for phylogenetic relationships among species while predicting unknown trait values. Here, the authors critically compare this approach with equations derived from phylogenetic generalised least squares and ordinary least squares, demonstrating its improved performance across diverse datasets.
Journal Article
The battle of the Labyrinth : the graphic novel
When demonic cheerleaders invade his high school, Percy Jackson hurries to Camp Half Blood, from whence he and his demigod friends set out on a quest through the Labyrinth, while the war between the Olympians and the evil Titan lord Kronos draws near.
BOOK
Terrestrial reproduction and parental care drive rapid evolution in the trade-off between offspring size and number across amphibians
The trade-off between offspring size and number is central to life history strategies. Both the evolutionary gain of parental care or more favorable habitats for offspring development are predicted to result in fewer, larger offspring. However, despite much research, it remains unclear whether and how different forms of care and habitats drive the evolution of the trade-off. Using data for over 800 amphibian species, we demonstrate that, after controlling for allometry, amphibians with direct development and those that lay eggs in terrestrial environments have larger eggs and smaller clutches, while different care behaviors and adaptations vary in their effects on the trade-off. Specifically, among the 11 care forms we considered at the egg, tadpole and juvenile stage, egg brooding, male egg attendance, and female egg attendance increase egg size; female tadpole attendance and tadpole feeding decrease egg size, while egg brooding, tadpole feeding, male tadpole attendance, and male tadpole transport decrease clutch size. Unlike egg size that shows exceptionally high rates of phenotypic change in just 19 branches of the amphibian phylogeny, clutch size has evolved at exceptionally high rates in 135 branches, indicating episodes of strong selection; egg and tadpole environment, direct development, egg brooding, tadpole feeding, male tadpole attendance, and tadpole transport explain 80% of these events. By explicitly considering diversity in parental care and offspring habitat by stage of offspring development, this study demonstrates that more favorable conditions for offspring development promote the evolution of larger offspring in smaller broods and reveals that the diversity of parental care forms influences the trade-off in more nuanced ways than previously appreciated.
Journal Article
Deep-sea origin and depth colonization associated with phenotypic innovations in scleractinian corals
The deep sea (>200 m) is home to a surprisingly rich biota, which in some cases compares to that found in shallow areas. Scleractinian corals are an example of this – they are key species in both shallow and deep ecosystems. However, what evolutionary processes resulted in current depth distribution of the marine fauna is a long-standing question. Various conflicting hypotheses have been proposed, but few formal tests have been conducted. Here, we use global spatial distribution data to test the bathymetric origin and colonization trends across the depth gradient in scleractinian corals. Using a phylogenetic approach, we infer the origin and historical trends in directionality and speed of colonization during the diversification in depth. We also examine how the emergence of photo-symbiosis and coloniality, scleractinian corals’ most conspicuous phenotypic innovations, have influenced this process. Our results strongly support an offshore-onshore pattern of evolution and varying dispersion capacities along depth associated with trait-defined lineages. These results highlight the relevance of the evolutionary processes occurring at different depths to explain the origin of extant marine biodiversity and the consequences of altering these processes by human impact, highlighting the need to include this overlooked evolutionary history in conservation plans.
Scleractinian corals are important in both shallow and deep ecosystems. Here, the authors use global spatial distribution data with a phylogenetic approach to examine directionality and speed of colonization during depth diversification, finding an offshore-onshore pattern of evolution and that depth dispersion is associated with phenotypic innovations.
Journal Article
Genes underlying the evolution of tetrapod testes size
Background
Testes vary widely in mass relative to body mass across species, but we know very little about which genes underlie and contribute to such variation. This is partly because evidence for which genes are implicated in testis size variation tends to come from investigations involving just one or a few species. Contemporary comparative phylogenetic methods provide an opportunity to test candidate genes for their role in phenotypic change at a macro-evolutionary scale—across species and over millions of years. Previous attempts to detect genotype-phenotype associations across species have been limited in that they can only detect where genes have driven directional selection (e.g. brain size increase).
Results
Here, we introduce an approach that uses rates of evolutionary change to overcome this limitation to test whether any of twelve candidate genes have driven testis size evolution across tetrapod vertebrates—regardless of directionality. We do this by seeking a relationship between the rates of genetic and phenotypic evolution. Our results reveal five genes (
Alkbh5
,
Dmrtb1
,
Pld6
,
Nlrp3
,
Sp4
) that each have played unique and complex roles in tetrapod testis size diversity. In all five genes, we find strong significant associations between the rate of protein-coding substitutions and the rate of testis size evolution. Such an association has never, to our knowledge, been tested before for any gene or phenotype.
Conclusions
We describe a new approach to tackle one of the most fundamental questions in biology: how do individual genes give rise to biological diversity? The ability to detect genotype-phenotype associations that have acted across species has the potential to build a picture of how natural selection has sculpted phenotypic change over millions of years.
Journal Article