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result(s) for
"Vetter, T"
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Sources of uncertainty in hydrological climate impact assessment: a cross-scale study
2018
Climate change impacts on water availability and hydrological extremes are major concerns as regards the Sustainable Development Goals. Impacts on hydrology are normally investigated as part of a modelling chain, in which climate projections from multiple climate models are used as inputs to multiple impact models, under different greenhouse gas emissions scenarios, which result in different amounts of global temperature rise. While the goal is generally to investigate the relevance of changes in climate for the water cycle, water resources or hydrological extremes, it is often the case that variations in other components of the model chain obscure the effect of climate scenario variation. This is particularly important when assessing the impacts of relatively lower magnitudes of global warming, such as those associated with the aspirational goals of the Paris Agreement. In our study, we use ANOVA (analyses of variance) to allocate and quantify the main sources of uncertainty in the hydrological impact modelling chain. In turn we determine the statistical significance of different sources of uncertainty. We achieve this by using a set of five climate models and up to 13 hydrological models, for nine large scale river basins across the globe, under four emissions scenarios. The impact variable we consider in our analysis is daily river discharge. We analyze overall water availability and flow regime, including seasonality, high flows and low flows. Scaling effects are investigated by separately looking at discharge generated by global and regional hydrological models respectively. Finally, we compare our results with other recently published studies. We find that small differences in global temperature rise associated with some emissions scenarios have mostly significant impacts on river discharge-however, climate model related uncertainty is so large that it obscures the sensitivity of the hydrological system.
Journal Article
Comparing impacts of climate change on streamflow in four large African river basins
2014
This study aims to compare impacts of climate change on streamflow in four large representative African river basins: the Niger, the Upper Blue Nile, the Oubangui and the Limpopo. We set up the eco-hydrological model SWIM (Soil and Water Integrated Model) for all four basins individually. The validation of the models for four basins shows results from adequate to very good, depending on the quality and availability of input and calibration data. For the climate impact assessment, we drive the model with outputs of five bias corrected Earth system models of Coupled Model Intercomparison Project Phase 5 (CMIP5) for the representative concentration pathways (RCPs) 2.6 and 8.5. This climate input is put into the context of climate trends of the whole African continent and compared to a CMIP5 ensemble of 19 models in order to test their representativeness. Subsequently, we compare the trends in mean discharges, seasonality and hydrological extremes in the 21st century. The uncertainty of results for all basins is high. Still, climate change impact is clearly visible for mean discharges but also for extremes in high and low flows. The uncertainty of the projections is the lowest in the Upper Blue Nile, where an increase in streamflow is most likely. In the Niger and the Limpopo basins, the magnitude of trends in both directions is high and has a wide range of uncertainty. In the Oubangui, impacts are the least significant. Our results confirm partly the findings of previous continental impact analyses for Africa. However, contradictory to these studies we find a tendency for increased streamflows in three of the four basins (not for the Oubangui). Guided by these results, we argue for attention to the possible risks of increasing high flows in the face of the dominant water scarcity in Africa. In conclusion, the study shows that impact intercomparisons have added value to the adaptation discussion and may be used for setting up adaptation plans in the context of a holistic approach.
Journal Article
Multi-model climate impact assessment and intercomparison for three large-scale river basins on three continents
2015
Climate change impacts on hydrological processes should be simulated for river basins using validated models and multiple climate scenarios in order to provide reliable results for stakeholders. In the last 10–15 years, climate impact assessment has been performed for many river basins worldwide using different climate scenarios and models. However, their results are hardly comparable, and do not allow one to create a full picture of impacts and uncertainties. Therefore, a systematic intercomparison of impacts is suggested, which should be done for representative regions using state-of-the-art models. Only a few such studies have been available until now with the global-scale hydrological models, and our study is intended as a step in this direction by applying the regional-scale models. The impact assessment presented here was performed for three river basins on three continents: the Rhine in Europe, the Upper Niger in Africa and the Upper Yellow in Asia. For that, climate scenarios from five general circulation models (GCMs) and three hydrological models, HBV, SWIM and VIC, were used. Four representative concentration pathways (RCPs) covering a range of emissions and land-use change projections were included. The objectives were to analyze and compare climate impacts on future river discharge and to evaluate uncertainties from different sources. The results allow one to draw some robust conclusions, but uncertainties are large and shared differently between sources in the studied basins. Robust results in terms of trend direction and slope and changes in seasonal dynamics could be found for the Rhine basin regardless of which hydrological model or forcing GCM is used. For the Niger River, scenarios from climate models are the largest uncertainty source, providing large discrepancies in precipitation, and therefore clear projections are difficult to do. For the Upper Yellow basin, both the hydrological models and climate models contribute to uncertainty in the impacts, though an increase in high flows in the future is a robust outcome ensured by all three hydrological models.
Journal Article
Propagation of forcing and model uncertainties on to hydrological drought characteristics in a multi-model century-long experiment in large river basins
2017
Recent climate change impact studies studies have presented conflicting results regarding the largest source of uncertainty in essential hydrological variables, especially streamflow and derived characteristics that describe the evolution of drought events. Part of the problem arises from the lack of a consistent framework to address compatible initial conditions for the impact models and a set of standardized historical and future forcings. The ISI-MIP2 project provides a good opportunity to advance our understanding of the propagation of forcing and model uncertainties on to century-long time series of drought characteristics using an ensemble of hydrological model (HM) projections across a broad range of climate scenarios and regions. To achieve this goal, we used six regional preconditioned hydrological models set up in seven large river basins: Upper-Amazon, Blue-Nile, Ganges, Upper-Niger, Upper-Mississippi, Rhine, and Upper-Yellow. These models were forced with bias-corrected outputs from five CMIP5 general circulation models (GCMs) under two extreme representative concentration pathway scenarios (i.e., RCP2.6 and RCP8.5) for the period 1971-2099. The simulated streamflow was transformed into a monthly runoff index (RI) to analyze the attributions of the GCM and HM uncertainties on to drought magnitudes and durations over time. The results indicated that GCM uncertainty mostly dominated over HM uncertainty for the projections of runoff drought characteristics, irrespective of the selected RCP and region. In general, the overall uncertainty increased with time. The uncertainty in the drought characteristics increased as the radiative forcing of the RCP increased, but the propagation of the GCM uncertainty on to a drought characteristic depended largely upon the hydro-climatic regime. Although our study emphasizes the need for multi-model ensembles for the assessment of future drought projections, the agreement between the GCM forcings was still too weak to draw conclusive recommendations.
Journal Article
The SNF2-Family Member Fun30 Promotes Gene Silencing in Heterochromatic Loci
by
Miller, J. Ross
,
Vetter, Anna T.
,
Neves-Costa, Ana
in
Access control
,
Adenosine triphosphatase
,
Adenosine Triphosphatases - chemistry
2009
Chromatin regulates many key processes in the nucleus by controlling access to the underlying DNA. SNF2-like factors are ATP-driven enzymes that play key roles in the dynamics of chromatin by remodelling nucleosomes and other nucleoprotein complexes. Even simple eukaryotes such as yeast contain members of several subfamilies of SNF2-like factors. The FUN30/ETL1 subfamily of SNF2 remodellers is conserved from yeasts to humans, but is poorly characterized. We show that the deletion of FUN30 leads to sensitivity to the topoisomerase I poison camptothecin and to severe cell cycle progression defects when the Orc5 subunit is mutated. We demonstrate a role of FUN30 in promoting silencing in the heterochromatin-like mating type locus HMR, telomeres and the rDNA repeats. Chromatin immunoprecipitation experiments demonstrate that Fun30 binds at the boundary element of the silent HMR and within the silent HMR. Mapping of nucleosomes in vivo using micrococcal nuclease demonstrates that deletion of FUN30 leads to changes of the chromatin structure at the boundary element. A point mutation in the ATP-binding site abrogates the silencing function of Fun30 as well as its toxicity upon overexpression, indicating that the ATPase activity is essential for these roles of Fun30. We identify by amino acid sequence analysis a putative CUE motif as a feature of FUN30/ETL1 factors and show that this motif assists Fun30 activity. Our work suggests that Fun30 is directly involved in silencing by regulating the chromatin structure within or around silent loci.
Journal Article
Identification of recurring tumor-specific somatic mutations in acute myeloid leukemia by transcriptome sequencing
2011
Genetic lesions are crucial for cancer initiation. Recently, whole genome sequencing, using next generation technology, was used as a systematic approach to identify mutations in genomes of various types of tumors including melanoma, lung and breast cancer, as well as acute myeloid leukemia (AML). Here, we identify tumor-specific somatic mutations by sequencing transcriptionally active genes. Mutations were detected by comparing the transcriptome sequence of an AML sample with the corresponding remission sample. Using this approach, we found five non-synonymous mutations specific to the tumor sample. They include a nonsense mutation affecting the
RUNX1
gene, which is a known mutational target in AML, and a missense mutation in the putative tumor suppressor gene
TLE4
, which encodes a RUNX1 interacting protein. Another missense mutation was identified in
SHKBP1
, which acts downstream of FLT3, a receptor tyrosine kinase mutated in about 30% of AML cases. The frequency of mutations in
TLE4
and
SHKBP1
in 95 cytogenetically normal AML patients was 2%. Our study demonstrates that whole transcriptome sequencing leads to the rapid detection of recurring point mutations in the coding regions of genes relevant to malignant transformation.
Journal Article
SWI/SNF-Like Chromatin Remodeling Factor Fun30 Supports Point Centromere Function in S. cerevisiae
by
Miller, J. Ross
,
Petrini, Edoardo
,
Durand-Dubief, Mickaël
in
Binding sites
,
Biology
,
Brewer's yeast
2012
Budding yeast centromeres are sequence-defined point centromeres and are, unlike in many other organisms, not embedded in heterochromatin. Here we show that Fun30, a poorly understood SWI/SNF-like chromatin remodeling factor conserved in humans, promotes point centromere function through the formation of correct chromatin architecture at centromeres. Our determination of the genome-wide binding and nucleosome positioning properties of Fun30 shows that this enzyme is consistently enriched over centromeres and that a majority of CENs show Fun30-dependent changes in flanking nucleosome position and/or CEN core micrococcal nuclease accessibility. Fun30 deletion leads to defects in histone variant Htz1 occupancy genome-wide, including at and around most centromeres. FUN30 genetically interacts with CSE4, coding for the centromere-specific variant of histone H3, and counteracts the detrimental effect of transcription through centromeres on chromosome segregation and suppresses transcriptional noise over centromere CEN3. Previous work has shown a requirement for fission yeast and mammalian homologs of Fun30 in heterochromatin assembly. As centromeres in budding yeast are not embedded in heterochromatin, our findings indicate a direct role of Fun30 in centromere chromatin by promoting correct chromatin architecture.
Journal Article
Modeling the impacts of climate change on nitrogen retention in a 4th order stream
by
Vetter, T.
,
Krysanova, V.
,
Boyacioglu, H.
in
Atmospheric Sciences
,
Biogeochemistry
,
case studies
2012
Climate induced changes of temperature, discharge and nitrogen concentration may change natural denitrification processes in river systems. Until now seasonal variation of N-retention by denitrification under different climate scenarios and the impact of river morphology on denitrification have not been thoroughly investigated. In this study climate scenarios (dry, medium and wet) have been used to characterize changing climatic and flow conditions for the period 2050–2054 in the 4th order stream Weiße Elster, Germany. Present and future periods of nitrogen turnover were simulated with the WASP5 river water quality model. Results revealed that, for a dry climate scenario, the mean denitrification rate was 71% higher in summer (low flow period between 2050 and 2054) and 51% higher in winter (high flow period) compared to the reference period. For the medium and wet climate scenarios, denitrification was slightly higher in summer (3% and 4%) and lower in winter (9% and 3% for medium and wet scenarios, respectively). Additionally, the variability of denitrification rates was higher in summer compared to winter conditions. For a natural river section, denitrification was a factor of 1.22 higher than for a canalized river reach. Besides, weirs along the river decrease the denitrification rate by 16% in July for dry scenario conditions. In the 42 km study reach, N-retention through denitrification amounted to 5.1% of the upper boundary N load during summer low flow conditions in the reference period. For the future dry climate scenario this value increased up to 10.2% and for the medium climate scenario up to 5.4%. In our case study the investigated climate scenarios showed that future discharge changes may have a larger impact on denitrification rates than future temperature changes. Overall results of the study revealed the significance of climate change in regulating the magnitude, seasonal pattern and variability of nitrogen retention. The results provide guidance for managing nitrogen related environmental problems for present and future climate conditions.
Journal Article
Design and Evaluation of a Damage-Tolerant Flight Control System
2005
Abstract
The performance and stability requirements for a robust flight control system design are presented in the form of a ‘design challenge.’ The challenge includes description of specific vehicle failures that are to be accommodated by the flight control system. The vehicle chosen for the design is the innovative control effector vehicle, and both longitudinal and lateral/directional degrees of freedom are included. Two flight conditions are considered: Mach number 0.3 and altitude 15 000 ft; Mach number 0.9 and altitude 35 000 ft. No scheduling of the flight control law is permitted in the design. After the performance and stability requirements are described, a solution to the design challenge is presented in the form of a sliding-mode control system offered as an alternative to reconfigurable designs. The performance of this system is then evaluated through analysis and computer simulation, including significant failures and damage.
Journal Article