Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
55
result(s) for
"WHIPPS, CHRISTOPHER M."
Sort by:
Morphological and molecular characterization of Ceratomyxa binhthuanensis n. sp. (Myxosporea: Ceratomyxidae) from the gall bladder of blacktip grouper Epinephelus fasciatus (Perciformes: Serranidae) in the East Sea of Vietnam
by
Van Ha, Nguyen
,
Whipps, Christopher M
,
Doanh, Pham Ngoc
in
Ceratomyxa
,
Epinephelus fasciatus
,
Fish
2022
A new myxozoan species, Ceratomyxa binhthuanensis n. sp. (Myxosporea: Ceratomyxidae), was found in the gall bladder of blacktip grouper Epinephelus fasciatus (Perciformes: Serranidae) in the East Sea of Vietnam. Myxospores were observed floating free in the gall bladder of 3 out of 20 fish examined (15%). Mature myxospores were elongate and slightly crescent-shaped and measured 12.2 ± 1.3 (10.8–16.0) μm in thickness and 5.8 ± 0.6 (4.8–6.9) μm in length, with two smooth equal shell valves. The two polar capsules were spherical and equal in size, measuring 2.6 ± 0.3 (2.3–2.9) μm in diameter. The posterior angle was slightly concave, 153.7° ± 5.6° (148.9°–166.0°). Molecular analysis of SSU rDNA sequence showed that Ceratomyxa binhthuanensis n. sp. differs from other Ceratomyxa spp. available in GenBank. Phylogenetic analysis indicated that C. binhthuanensis n. sp. was closely related to three species, Ceratomyxa nolani, Ceratomyxa yokoyamai, and Ceratomyxa cutmorei, which also infect fish hosts of the genus Epinephelus.
Journal Article
Quantitative Insights into the Contribution of Nematocysts to the Adaptive Success of Cnidarians Based on Proteomic Analysis
2022
Nematocysts are secretory organelles in cnidarians that play important roles in predation, defense, locomotion, and host invasion. However, the extent to which nematocysts contribute to adaptation and the mechanisms underlying nematocyst evolution are unclear. Here, we investigated the role of the nematocyst in cnidarian evolution based on eight nematocyst proteomes and 110 cnidarian transcriptomes/genomes. We detected extensive species-specific adaptive mutations in nematocyst proteins (NEMs) and evidence for decentralized evolution, in which most evolutionary events involved non-core NEMs, reflecting the rapid diversification of NEMs in cnidarians. Moreover, there was a 33–55 million year macroevolutionary lag between nematocyst evolution and the main phases of cnidarian diversification, suggesting that the nematocyst can act as a driving force in evolution. Quantitative analysis revealed an excess of adaptive changes in NEMs and enrichment for positively selected conserved NEMs. Together, these findings suggest that nematocysts may be key to the adaptive success of cnidarians and provide a reference for quantitative analyses of the roles of phenotypic novelties in adaptation.
Journal Article
Description of Myxobolus hoabinhensis n. sp. (Myxosporea: Myxobolidae), infecting the trunk muscles of goldfish Carassius auratus (Linnaeus, 1758) (Cypriniformes: Cyprinidae) in northern Vietnam
by
Whipps, Christopher M
,
Yurakhno, Violetta M
,
Tham, Nguyen Thi
in
Aquaculture
,
Carassius auratus
,
Cyprinidae
2022
During a survey of myxosporean parasites of freshwater fishes in northern Vietnam, myxospores resembling those of the genus Myxobolus (Myxosporea: Myxobolidae) were found in the trunk muscle of 6 out of 35 specimens (17.14%) of wild goldfish Carassius auratus (Cypriniformes: Cyprinidae). The mature spores were 12.0 ± 0.4 (11.4 − 12.6) µm long, 8.5 ± 0.2 (7.9 − 9.0) µm wide and 6.1 ± 0.2 (5.8 − 6.3) µm thick, containing two pyriform-shaped polar capsules unequal in size. The larger polar capsule was 7.6 ± 0.3 (7.1 − 8.4) µm long and 3.5 ± 0.1 (3.3 − 3.8) µm wide, and the smaller polar capsule was 6.2 ± 0.3 (5.5 − 6.7) µm long and 2.9 ± 0.2 (2.6 − 3.4) µm wide. Each polar capsule contained a polar filament with 3–5 coils. A phylogenetic analysis based on the small subunit rDNA (SSU rDNA) sequence revealed that this Myxobolus species forms a distinct branch in the phylogenetic tree sister to Myxobolus artus and Myxobolus cyprini, with DNA sequence similarity at 97.6% to M. artus and 97.5% to M. cyprini. A combination of the morphological characteristics and molecular data suggest that this is an undescribed species, and we propose the name Myxobolus hoabinhensis n. sp.
Journal Article
Is conservation based on best available science creating an ecological trap for an imperiled lagomorph?
by
Ryan, Sadie J.
,
Cohen, Jonathan B.
,
Whipps, Christopher M.
in
adaptive management
,
Animal behavior
,
Competition
2021
Habitat quality regulates fitness and population density, making it a key driver of population size. Hence, increasing habitat quality is often a primary goal of species conservation. Yet, assessments of fitness and density are difficult and costly to obtain. Therefore, species conservation often uses “best available science,” extending inferences across taxa, space, or time, and inferring habitat quality from studies of habitat selection. However, there are scenarios where habitat selection is not reflective of habitat quality, and this can lead to maladaptive management strategies. The New England cottontail (Sylvilagus transitionalis) is an imperiled shrubland obligate lagomorph whose successful recovery hinges on creation of suitable habitat. Recovery of this species is also negatively impacted by the non‐native eastern cottontail (Sylvilagus floridanus), which can competitively exclude New England cottontails from preferred habitat. Herein, we evaluate habitat quality for adult and juvenile New England and eastern cottontails using survival and density as indicators. Our findings did not support selection following an ideal free distribution by New England cottontails. Instead, selected resources, which are a target of habitat management, were associated with low survival and density and pointed to a complex trade‐off between density, survival, habitat, and the presence of eastern cottontails. Further, movement distance was inversely correlated with survival in both species, suggesting that habitat fragmentation limits the ability of cottontails to freely distribute based on habitat quality. While habitat did not directly regulate survival of juvenile cottontails, tick burden had a strong negative impact on juvenile cottontails in poor body condition. Given the complex interactions among New England cottontails, eastern cottontails, and habitat, directly assessing and accounting for factors that limit New England cottontail habitat quality in management plans is vital to their recovery. Our study demonstrates an example of management for possible ecological trap conditions via the application of incomplete knowledge. Habitat selection studies are frequently used to infer habitat quality and establish management guidelines; however, habitat selection may become decoupled from fitness, resulting in incorrect inferences of habitat quality. We evaluate habitat quality using survival and density as indicators for New England cottontails and non‐native eastern cottontails. Our findings suggest New England cottontails selected resources that were associated with low survival and density, and pointed to a complex trade‐off between density, survival, habitat, and the presence of eastern cottontails.
Journal Article
Is Mixtures’ Additivity Supported by Empirical Data? A Case Study of Developmental Toxicity of PFOS and 6:2 FTS in Wildtype Zebrafish Embryos
by
Razavi, N. Roxanna
,
Fernando, Sujan
,
Whipps, Christopher M.
in
Acids
,
Aquatic life
,
Aquatic organisms
2022
Per- and polyfluoroalkyl substances (PFASs) are a major priority for many federal and state regulatory agencies charged with monitoring levels of emerging contaminants in environmental media and setting health-protective benchmarks to guide risk assessments. While screening levels and toxicity reference values have been developed for numerous individual PFAS compounds, there remain important data gaps regarding the mode of action for toxicity of PFAS mixtures. The present study aims to contribute whole-mixture toxicity data and advance the methods for evaluating mixtures of two key components of aqueous film-forming foams: perfluorooctanesulfonic acid (PFOS), and 6:2 fluorotelomer sulfonic acid (6:2 FTS). Wildtype (AB) zebrafish embryos were exposed to PFOS and 6:2 FTS, both as individual components and as binary mixtures, from 2 to 122 h post-fertilization. Five treatment levels were selected to encompass environmentally relevant exposure levels. Experimental endpoints consisted of mortality, hatching, and developmental endpoints, including swim bladder inflation, yolk sac area, and larval body length. Results from dose–response analysis indicate that the assumption of additivity using conventional points of departure (e.g., NOAEL, LOAEL) is not supported for critical effect endpoints with these PFAS mixtures, and that the interactions vary as a function of the dose range. Alternative methods for quantifying relative potency are proposed, and recommendations for additional investigations are provided to further advance assessments of the toxicity of PFAS mixtures to aquatic organisms.
Journal Article
Novel Report of the European Variant of Echinococcus multilocularis in Coyotes (Canis latrans) in New York State
2023
Echinococcus multilocularis is a zoonotic cestode that can infect wildlife, domestic animals, and humans. In humans, infection with the larval stage of the parasite causes the disease alveolar echinococcosis, which can be fatal if left untreated. Surveillance for the parasite in New York State occurred during the 2021-2022 coyote (Canis latrans) hunting season. Fecal samples and the gastrointestinal tracts (GIT) from 43 coyote carcasses were collected from hunters and trappers across 8 counties. Fecal samples were screened for E. multilocularis DNA using a multiplex PCR. Three samples tested positive for E. multilocularis DNA. Subsequently, adult cestodes were collected from GIT samples using the sedimentation, filtration, and counting technique. Phylogenetic analysis of DNA sequences from the nad2 and cob genes from individual worms indicated these New York sequences cluster with E. multilocularis sequences from Europe. This is the first report of adult E. multilocularis cestodes in New York State, as well as the first detection of the European haplotype of E. multilocularis in wildlife in the northeastern United States.
Journal Article
Genetic Diversity of Cystodiscus Species in Amphibians in the Southern United States
by
Lindsay, K. Alice
,
Whipps, Christopher M.
,
McAllister, Chris T.
in
alcohols
,
Amphibians
,
Amphibians - parasitology
2021
Myxosporean species in the genus Cystodiscus are parasites of amphibians and have been reported from several continents. Typically used for the identification of myxozoans, the spores produced by these species are similar to one another, possessing 2 polar capsules and being ovoid. The number of transverse depressions on the spore can be useful for delineating species, but these can sometimes be difficult to distinguish. In North America, Cystodiscus serotinus and Cystodiscus melleni have been described, and for C. serotinus in particular, numerous reports and a wide range of hosts have been associated with this species. Given the challenges of identifying some of these species, we questioned whether all encounters of Cystodiscus species can be attributed to these 2 described species, or if there may be additional undescribed species or cryptic species. Over 7 yr, 383 amphibians representing 13 species of toads, frogs, and salamanders were collected from sites in Oklahoma and Arkansas. Cystodiscus infections were found in 56 individuals (14.6%). Tissues from these infected individuals were preserved in alcohol for genetic analysis. The small subunit (SSU) and large subunit (LSU) ribosomal RNA genes were partially sequenced and analyzed phylogenetically. Nine distinct SSU sequence types and 7 distinct LSU sequence types were identified. Phylogenetically, sequence types were attributable to C. serotinus, C. melleni, Cystodiscus axonis, and an undescribed species. For the previously described species, there were multiple SSU sequence types: 4 for C. serotinus and 2 for both C. melleni and C. axonis. Phylogenetic patterns were similar for the LSU sequence analysis using a shorter sequence than the SSU, and we propose that the LSU is useful for initial barcoding of Cystodiscus species in any future surveys. In our qualitative assessment of sequence types compared to geography and host species, SSU types C1 and C2 (C. axonis) were only found in Union County, Arkansas, and McCurtain County, Oklahoma, respectively. Also, salamanders were only infected with SSU types B or D (C. melleni), and type B was only found in salamanders. Our finding of C. axonis in North America is notable because this species was described in Australia and is associated with host pathology. Our work reveals that there are cryptic species of Cystodiscus in the United States, one of which may be a pathogen, highlighting the importance of genetic analysis for future surveys of these species.
Journal Article
Habitat management to reduce competitive interactions
by
Cohen, Jonathan B.
,
Eline, Drew V.
,
Whipps, Christopher M.
in
Best management practices
,
Canopies
,
canopy
2023
Habitat management recommendations are often based on best available science determined through retroductive and inductive hypotheses. Such recommendations are not frequently tested, potentially resulting in the implementation of unreliable practices for management of imperiled species. The New England cottontail (Sylvilagus transitionalis) is an imperiled shrubland-obligate species whose recovery efforts include habitat management and restoration. Researchers suggest former best management practices for the species may result in ecological traps and new recommendations have been developed. We evaluated these newly revised best management practices designed to retain higher tree canopy closure to promote New England cottontails without encouraging eastern cottontails (Sylvilagus floridanus). We compared New England and eastern cottontail density between management plots (tree canopy thinned with all downed trees left on the ground, with or without invasive shrub treatment) and control plots (unmanaged) and examined the influence of management on resource selection and survival. Management strategies retaining higher canopy closure promoted stronger selection by New England cottontails than by eastern cottontails. Catch per unit effort of New England cottontails was greater than for eastern cottontails in management plots (P = 0.002). For both species, the proportion of the 95% home range overlapping managed areas was greater than the proportion of managed area in the habitat patch; however, for the 50% core area of the home range, this was only true for New England cottontails. When post-treatment canopy cover was >75%, New England cottontails selected canopy-thinning treatments without invasive shrub removal over unmanaged areas, but selection by eastern cottontails was unaffected by management treatment or canopy cover. Survival probability of both species was high and uncorrelated with time spent in management areas. Survival probability decreased as the average distance a rabbit moved in a 7-day period increased. Our results illustrate the need to revise management strategies that emphasize eliminating canopy cover when improving New England cottontail habitat is an objective, particularly where they are sympatric with eastern cottontails.
Journal Article
Synopsis of myxosporean species (Cnidaria: Myxozoa) parasitizing fishes from Vietnam
2023
This paper provides an updated checklist of species-level identified myxosporeans from marine and freshwater fishes in Vietnam. The list includes 51 nominal species (38 marine and 13 freshwater) belonging to 9 genera: Myxobolus Bütschli, 1882 (26 species); Kudoa Meglitsch, 1947 (6 species); Henneguya Thélohan, 1892 (6 species); Thelohanellus Kudo, 1933 (5 species); Unicapsula Davis, 1924 (2 species); Ceratomyxa Thélohan, 1892 (2 species), Zschokkella Auerbach, 1909 (2 species); Auerbachia Meglitsch, 1960 (1 species), and Meglitschia Kovaleva, 1988 (1 species). For each parasite species, information on myxospore morphology, line drawings, fish hosts, infection sites, and collection locality in Vietnam are reported. Where available, we also provide GenBank accession numbers for nucleotide sequence data. In addition, taxonomic status of several species was discussed and Myxobolus eszterbaueri nom. nov. is proposed as a junior homonym for Myxobolus hakyi Baska, Voronin, Eszterbauer, Müller, Marton & Molnár 2009, which is preoccupied.
Journal Article
Separating Proactive Conservation from Species Listing Decisions
by
Whipps, Christopher M
,
Kovach, Adrienne I
,
Cheeseman, Amanda E
in
Assessments
,
Conservation
,
Endangered & extinct species
2022
Proactive Conservation is a paradigm of natural resource management in the United States that encourages voluntary, collaborative efforts to restore species before they need to be protected through government regulations. This paradigm is widely used to conserve at-risk species today, and when used in conjunction with the Policy for Evaluation of Conservation Efforts (PECE), it allows for successful conservation actions to preclude listing of species under the Endangered Species Act (ESA). Despite the popularity of this paradigm, and recent flagship examples of its use (e.g., greater sage grouse, Centrocercus urophasianus), critical assessments of the outcomes of Proactive Conservation are lacking from the standpoint of species status and recovery metrics. Here, we provide such an evaluation, using the New England cottontail (Sylvilagus transitionalis), heralded as a success of Proactive Conservation efforts in the northeastern United States, as a case study. We review the history and current status of the species, based on the state of the science, in the context of the Conservation Initiative, and the 2015 PECE decision not to the list the species under the ESA. In addition to the impacts of the PECE decision on the New England cottontail conservation specifically, our review also evaluates the benefits and limits of the Proactive Conservation paradigm more broadly, and we make recommendations for its role in relation to ESA implementation for the future of at-risk species management. We find that the status and assurances for recovery under the PECE policy, presented at the time of the New England cottontail listing decision, were overly optimistic, and the status of the species has worsened in subsequent years. We suggest that use of PECE to avoid listing may occur because of the perception of the ESA as a punitive law and a misconception that it is a failure, although very few listed species have gone extinct. Redefining recovery to decouple it from delisting and instead link it to probability of persistence under recommended conservation measures would remove some of the stigma of listing, and it would strengthen the role of Species Status Assessments in endangered species conservation.
Journal Article