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Accurate crop-type maps are urgently needed as input data for various applications, leading to improved planning and more sustainable use of resources. Satellite remote sensing is the optimal tool to provide such data. Images from Synthetic Aperture Radar (SAR) satellite sensors are preferably used as they work regardless of cloud coverage during image acquisition. However, processing of SAR is more complicated and the sensors have development potential. Dealing with such a complexity, current studies should aim to be reproducible, open, and built upon free and open-source software (FOSS). Thereby, the data can be reused to develop and validate new algorithms or improve the ones already in use. This paper presents a case study of crop classification from microwave remote sensing, relying on open data and open software only. We used 70 multitemporal microwave remote sensing images from the Sentinel-1 satellite. A high-resolution, high-precision digital elevation model (DEM) assisted the preprocessing. The multi-data approach (MDA) was used as a framework enabling to demonstrate the benefits of including external cadastral data. It was used to identify the agricultural area prior to the classification and to create land use/land cover (LULC) maps which also include the annually changing crop types that are usually missing in official geodata. All the software used in this study is open-source, such as the Sentinel Application Toolbox (SNAP), Orfeo Toolbox, R, and QGIS. The produced geodata, all input data, and several intermediate data are openly shared in a research database. Validation using an independent validation dataset showed a high overall accuracy of 96.7% with differentiation into 11 different crop-classes.

Crop distribution information is essential for tackling some challenges associated with providing food for a growing global population. This information has been successfully compiled using the Multi-Data Approach (MDA). However, the current implementation of the approach is based on optical remote sensing, which fails to deliver the relevant information under cloudy conditions. We therefore extend the MDA by using Land Use/Land Cover classifications derived from six multitemporal and dual-polarimetric TerraSAR-X stripmap images, which do not require cloud-free conditions. These classifications were then combined with auxiliary, official geodata (ATKIS and Physical Blocks (PB)) data to lower misclassification and provide an enhanced LULC map that includes further information about the annual crop classification. These final classifications showed an overall accuracy (OA) of 75% for seven crop-classes (maize, sugar beet, barley, wheat, rye, rapeseed, and potato). For potatoes, however, classification does not appear to be as consistently accurate, as could be shown from repeated comparisons with variations of training and validation fields. When the rye, wheat, and barley classes were merged into a winter cereals class, the resultant five crop-class classifications had a high OA of about 90%.

The ratio of leaf area to ground area (leaf area index, LAI) is an important state variable in ecosystem studies since it influences fluxes of matter and energy between the land surface and the atmosphere. As a basis for generating temporally continuous and spatially distributed datasets of LAI, the current study contributes an analysis of its spatial variability and spatial structure. Soil-vegetation-atmosphere fluxes of water, carbon and energy are nonlinearly related to LAI. Therefore, its spatial heterogeneity, i.e., the combination of spatial variability and structure, has an effect on simulations of these fluxes. To assess LAI spatial heterogeneity, we apply a Comprehensive Data Analysis Approach that combines data from remote sensing (5 m resolution) and simulation (150 m resolution) with field measurements and a detailed land use map. Test area is the arable land in the fertile loess plain of the Rur catchment on the Germany-Belgium-Netherlands border. LAI from remote sensing and simulation compares well with field measurements. Based on the simulation results, we describe characteristic crop-specific temporal patterns of LAI spatial variability. By means of these patterns, we explain the complex multimodal frequency distributions of LAI in the remote sensing data. In the test area, variability between agricultural fields is higher than within fields. Therefore, spatial resolutions less than the 5 m of the remote sensing scenes are sufficient to infer LAI spatial variability. Frequency distributions from the simulation agree better with the multimodal distributions from remote sensing than normal distributions do. The spatial structure of LAI in the test area is dominated by a short distance referring to field sizes. Longer distances that refer to soil and weather can only be derived from remote sensing data. Therefore, simulations alone are not sufficient to characterize LAI spatial structure. It can be concluded that a comprehensive picture of LAI spatial heterogeneity and its temporal course can contribute to the development of an approach to create spatially distributed and temporally continuous datasets of LAI.

Information on crop height, crop growth and biomass distribution is important for crop management and environmental modelling. For the determination of these parameters, terrestrial laser scanning in combination with real-time kinematic GPS (RTK–GPS) measurements was conducted in a multi-temporal approach in two consecutive years within a single field. Therefore, a time-of-flight laser scanner was mounted on a tripod. For georeferencing of the point clouds, all eight to nine positions of the laser scanner and several reflective targets were measured by RTK–GPS. The surveys were carried out three to four times during the growing periods of 2008 (sugar-beet) and 2009 (mainly winter barley). Crop surface models were established for every survey date with a horizontal resolution of 1 m, which can be used to derive maps of plant height and plant growth. The detected crop heights were consistent with observations from panoramic images and manual measurements (R² = 0.53, RMSE = 0.1 m). Topographic and soil parameters were used for statistical analysis of the detected variability of crop height and significant correlations were found. Regression analysis (R² 

The phylum Oomycota comprises important tree pathogens like Phytophthora quercina, involved in central European oak decline, and Phytophthora cinnamomi shown to affect holm oaks among many other hosts. Despite the importance to study the distribution, dispersal and niche partitioning of this phylum, metabarcoding surveys, and studies considering environmental factors that could explain oomycete community patterns are still rare. We investigated oomycetes in the rhizosphere of evergreen oaks in a Spanish oak woodland using metabarcoding based on Illumina sequencing of the taxonomic marker cytochrome c oxidase subunit II (cox2). We developed an approach amplifying a 333 bp long fragment using the forward primer Hud‐F (Mycologia, 2000) and a reverse primer found using DegePrime (Applied and Environmental Microbiology, 2014). Factors reflecting topo‐edaphic conditions and tree health were linked to oomycete community patterns. The majority of detected OTUs belonged to the Peronosporales. Most taxa were relatives of the Pythiaceae, but relatives of the Peronosporaceae and members of the Saprolegniales were also found. The most abundant OTUs were related to Globisporangium irregulare and P. cinnamomi, both displaying strong site‐specific patterns. Oomycete communities were strongly correlated with the environmental factors: altitude, crown foliation, slope and soil skeleton and soil nitrogen. Our findings illustrate the significance of small scale variation in habitat conditions for the distribution of oomycetes and highlight the importance to study oomycete communities in relation to such ecological patterns. The phylum Oomycota comprises important tree pathogens, but knowledge on environmental factors that could explain their community patterns is scarce. To advance our understanding, oomycetes in the oak rhizosphere were studied using metabarcoding of the taxonomic marker cytochrome c oxidase subunit II and linked to biotic and abiotic variables. Oomycete communities were strongly correlated with the environmental factors altitude, crown foliation, slope and soil skeleton and soil nitrogen.

Most activities of humankind take place in the transition zone between four compartments of the terrestrial system: the unconfined aquifer, including the unsaturated zone; surface water; vegetation; and atmosphere. The mass, momentum, and heat energy fluxes between these compartments drive their mutual state evolution. Improved understanding of the processes that drive these fluxes is important for climate projections, weather prediction, flood forecasting, water and soil resources management, agriculture, and water quality control. The different transport mechanisms and flow rates within the compartments result in complex patterns on different temporal and spatial scales that make predictions of the terrestrial system challenging for scientists and policy makers. The Transregional Collaborative Research Centre 32 (TR32) was formed in 2007 to integrate monitoring with modeling and data assimilation in order to develop a holistic view of the terrestrial system. TR32 is a long-term research program funded by the German national science foundation Deutsche Forschungsgemeinschaft (DFG), in order to focus and integrate research activities of several universities on an emerging scientific topic of high societal relevance. Aiming to bridge the gap between microscale soil pores and catchment-scale atmospheric variables, TR32 unites research groups from the German universities of Aachen, Bonn, and Cologne, and from the environmental and geoscience departments of Forschungszentrum Jülich GmbH. Here, we report about recent achievements in monitoring and modeling of the terrestrial system, including the development of new observation techniques for the subsurface, the establishment of cross-scale, multicompartment modeling platforms from the pore to the catchment scale, and their use to investigate the propagation of patterns in the state and structure of the subsurface to the atmospheric boundary layer.

The ratio of leaf area to ground area (leaf area index, LAI) is an important state variable in ecosystem studies since it influences fluxes of matter and energy between the land surface and the atmosphere. As a basis for generating temporally continuous and spatially distributed datasets of LAI, the current study contributes an analysis of its spatial variability and spatial structure. Soil-vegetation-atmosphere fluxes of water, carbon and energy are nonlinearly related to LAI. Therefore, its spatial heterogeneity, i.e., the combination of spatial variability and structure, has an effect on simulations of these fluxes. To assess LAI spatial heterogeneity, we apply a Comprehensive Data Analysis Approach that combines data from remote sensing (5 m resolution) and simulation (150 m resolution) with field measurements and a detailed land use map. Test area is the arable land in the fertile loess plain of the Rur catchment on the Germany-Belgium-Netherlands border. LAI from remote sensing and simulation compares well with field measurements. Based on the simulation results, we describe characteristic crop-specific temporal patterns of LAI spatial variability. By means of these patterns, we explain the complex multimodal frequency distributions of LAI in the remote sensing data. In the test area, variability between agricultural fields is higher than within fields. Therefore, spatial resolutions less than the 5 m of the remote sensing scenes are sufficient to infer LAI spatial variability. Frequency distributions from the simulation agree better with the multimodal distributions from remote sensing than normal distributions do. The spatial structure of LAI in the test area is dominated by a short distance referring to field sizes. Longer distances that refer to soil and weather can only be derived from remote sensing data. Therefore, simulations alone are not sufficient to characterize LAI spatial structure. It can be concluded that a comprehensive picture of LAI spatial heterogeneity and its temporal course can contribute to the development of an approach to create spatially distributed and temporally continuous datasets of LAI.