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Core germplasm, a strategically selected subset of the original germplasm, aims to maximize the representation of genetic diversity within the entire collection. Establishing a germplasm resource bank is essential for the effective management and sustainable utilization of genetic resources. This study developed a core germplasm repository for Hypsizygus marmoreus, a commercially important mushroom species, to capture the genetic diversity of the original collection with a minimal sample size. Genetic diversity and cluster analyses were conducted on 57 representative strains of H. marmoreus, including both cultivated and wild accessions from different regions, using 15 pairs of simple sequence repeat (SSR) markers. DNA molecular identity cards were generated for all germplasms, and cultivation trials with agronomic trait assessments were performed on 24 core accessions. A total of 115 distinct alleles were identified, with genetic similarity coefficients ranging from 0.70 to 1.00. Clustering at a similarity threshold of 0.76 classified the strains into five groups. The core germplasm panel, comprising 24 accessions (42.11% of the total collection), retained full allelic diversity and preserved the genetic and phenotypic variability of the original population, confirming its suitability for parental selection in breeding programs. unique molecular identity codes were developed for each H. marmoreus germplasm by integrating SSR marker profiles with data on geographical origin, fruiting body color, and cultivation traits. These were converted into DNA molecular ID codes, providing a reliable system for rapid identification and traceability of germplasm resources. The findings offer a valuable reference for breeding improvement and the protection of edible fungal varieties with independent intellectual property rights.

Flammulina filiformis is one of the widely produced edible fungi worldwide. It is rich in γ-aminobutyric acid (GABA), a non-protein amino acid with important physiological functions in humans. To investigate the functions of key genes in the GABA metabolic pathway of F. filiformis, we isolated the monokaryon Fv-HL23-1 from the factory-cultivated F. filiformis strain Fv-HL23 and then sequenced and assembled the genome using the PacBio Sequel and Illumina NovaSeq sequencing platforms. The results showed that the genome comprised 140 scaffolds with a total length of 40.96 Mb, a GC content of 49.62%, an N50 of 917,125 bp, and 14,256 protein-coding genes. Phylogenetic analysis based on the whole genome revealed a close evolutionary relationship of Fv-HL23-1 with Armillaria mellea, Lentinula edodes, and Schizophyllum commune. A total of 589 carbohydrate-active enzymes were identified in the genome of Fv-HL23-1, suggesting its strong lignocellulose degradation ability, and 108 CYP450 gene family members were identified, suggesting important functions such as resistance to stress, secondary metabolite synthesis, and growth and development. The F. filiformis proteins glutamate decarboxylase 1 (Ff-GAD1) and glutamate decarboxylase 2 (Ff-GAD2), which may be responsible for GABA synthesis, were identified by protein alignment. Molecular docking analysis showed that Ff-GAD2 may have better catalytic activity than Ff-GAD1. To verify the function of Ff-gad2, its heterologous expression in the mycelia of the mononuclear Hypsizigus marmoreus was analyzed. Compared with wild type, the GABA content of mycelia was increased by 85.40–283.90%, the growth rate was increased by 9.39 ± 2.35%, and the fresh weight was increased by 18.44 ± 7.57%. Ff-GAD2 may play a catalytic role in GABA synthesis. In addition, the expression of the full-length Ff-gad2 gene was increased by 7.96 ± 1.39 times compared with the exon expression level in H. marmoreus mycelia, suggesting that the intron may contribute to the heterologous expression of Ff-GAD2. Based on whole-genome sequencing, we analyzed the enzyme system related to the important life activities of F. filiformis, focusing on the function of Ff-GAD, a key enzyme in the GABA synthesis pathway. The results lay a foundation for elucidating the GABA metabolism pathway of edible fungi and developing targeted breeding strategies for GABA-producing edible fungi.

Recently, in China, during the period of transition between spring and summer, the combination of sandstorms and ozone (O3) pollution has posed a significant challenge to the strategy of coordinated control of fine particulate matters (PM2.5) and O3. On the one hand, the dust invasion brings many primary aerosols and causes a large range of transboundary transport. On the other hand, the high concentration of aerosol causes a severe disturbance to the distribution of O3. Traditionally, high-resolution assessments of the spatial distribution of aerosols and O3 can be carried out using LiDAR technology. However, the negligence of the influence of aerosols in the process of O3 retrieval in traditional differential absorption lidar (DIAL) leads to an error in the accuracy of ozone concentration. Especially when dust transit occurs, the errors become bigger. In this study, a self-customized four-wavelength differential-absorption LiDAR system was used to synchronously obtain the accurate vertical distributions of ozone and high-concentration aerosol. The wavelength index of concentrated aerosol was inverted and applied to the differential equation framework for O3 calculation. This novel approach to retrieving the vertical profile of O3 was proposed and verified by applying it to a dust pollution event that occurred from April to May 2021 in Anyang City Henan Province, which is located in Northern China. It was found that the extinction coefficient of aerosol reached 2.5 km−1 during the dust period, and O3 was mainly distributed between 500 m and 1500 m. The O3 error exceeded over 10% arising from the high-concentration aerosol below 1.5 km during the dust storm event. By employing the inversion algorithm while considering the aerosol effects, the ozone concentration error was improved by over 10% compared with the error recorded without considering the aerosol influence especially in dust events. Through this study, it was found that the algorithm could effectively realize the synchronous and accurate inversion of high-concentration aerosols and O3 and can provide key technical support for air pollution control in China in the future.

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Pleurotus eryngii is a tasty and low-calorie mushroom containing abundant high-quality protein. This study aims to improve the digestibility of P. eryngii protein (PEP) and hence to facilitate its development as a healthy alternative protein. The extracted PEP was pretreated with 1000–5000 U of papain, neutral protease and alkaline protease. The Chyme collected from in vitro simulated gastrointestinal digestion was analyzed by fluorescence microscopy and protein particle analyzer, and the endpoint profiles of peptides and amino acids were determined by UHPLC-MS/MS and NanoLC-MS/MS. The particle size curve and fluorescence microscopy images jointly supported that protease hydrolysis improved decomposition and dispersion of PEP during digestion, particularly in the gastric phase. The impact on Zeta potential was minimal. Proteases effectively increased the abundance of amino acids after digestion, particularly L-isomer Lys and Arg Maximum release was achieved when pretreated with 5000 U of alkaline protease, reaching 7.54 times that of control. Pretreatments by proteases also notably increased digestive yields of 16,736–19,870 peptides, with the maximum reaching 1.70 times that of the control, which mainly consisted of small peptides composed of 7–15 amino acids with molecular weight below 800 Da. The findings indicated that protease hydrolysis, especially pretreatment with 5000 U of alkaline protease, effectively enhanced the digestibility of PEP, which shed light on providing enzymatic approaches for improving bioavailability and developing healthy fungal proteins.

The culinary-medicinal mushroom Grifola frondosa is widely cultivated in East Asia. In this study, the complete mitochondrial genome of G. frondosa was determined using Illumina sequencing. The circular molecule was 197,486 bp in length with a content of 25.01% GC, which was one of the largest mitochondrial genomes in the order Polyporales. A total of 39 known genes encoding 13 common mitochondrial genes, 24 tRNA genes, 1 ribosomal protein s3 gene (rps3), and 1 DNA polymerase gene (dpo) were predicted in this genome. The phylogenetic analysis showed that G. frondosa clustered together with Sparassis crispa, Laetiporus sulphureus, Wolfiporia cocos, and Taiwanofungus camphoratus. The complete mitochondrial genome reported here may provide new insight into genetic information and evolution for further studies.

The straw-rotting edible fungus Volvariella volvacea is a widely cultivated edible fungus across China and Southeast Asian countries. Three complete mitochondrial genomes of V. volvacea from China, Thailand, and India were determined using the next-generation sequencing technology. The genome sizes of the three strains (China, Thailand, and India) were 62,541 bp, 64,531 bp, and 65,668 bp with GC contents of 38.46%, 38.56%, and 38.52%, respectively. All the genomes encoded 14 conserved protein-coding genes, the small ribosomal RNA subunits (rns), large ribosomal RNA subunits (rnl), and 23 tRNAs were located on the same strand. In the putative protein-coding genes, four introns were distributed in cox1 in the genomes of V23-1 and V8. 5 introns (four introns invaded into cox1and one intron invaded into cob) were detected in Tai8. The phylogenetic analysis confirmed that V. volvacea was a number of Agaricales. This mitochondrial genome may open new avenues for understanding the phylogeny and evolution of Pluteaceae and Agaricales.

Rhizopogon roseolus (Corda) Th. M. Fr., known as “shoro” in Japanese, is a hypogeous basidiomycete that is an ectomycorrhizal symbiont of Pinaceae. In this study, we examined the mycelial organization and karyological phase of the primary and secondary mycelia of this mushroom, and evaluated their ability to form ectomycorrhizal association with host pine roots. Variability in nuclear number was recognized in not only basidiospore isolates but also in hybrid strains obtained from crosses between the isolates. Binucleate cells were the most frequently found in both the basidiospore isolates and hybrid strains. PCR-restriction fragment length polymorphism (RFLP) analysis was performed on two basidiospore isolates, a hybrid strain, and a tissue culture isolate from the fruiting body. The RFLP patterns of the two basidiospore isolates differed, although the total calculated size of the fragments for each isolate was close to the expected size. The compatibility RFLP patterns in the hybrid strain and tissue culture isolate were the same and the total calculated size was up to twice that expected. When unisporic isolates were aseptically inoculated onto the roots of P. thunbergii , typical ectomycorrhizas were formed on the root systems. A semi-thin section from the ectomycorrhiza formed by a unisporic isolate showed the presence of mantle layers surrounding the root and Hartig net hyphae, which developed between the epidermal and cortical cells. This is the first study to show that ectomycorrhizas can be formed by basidiospore isolates, in which the mycelial organization was revealed, and which were karyologically characterized as homokaryon by RFLP.

We sequenced and characterized the genes for homeodomain proteins (RrA1-hox1, RrA1-hox2) and the flanking mip gene in a bipolar ectomycorrhizal basidiomycete, Rhizopogon roseolus. The sequenced region mapped to the A mating type locus. By nucleotide alignment of partial nucleotide sequences of two Rrhox1 genes from two mating compatible monokaryotic strains, we deduced that the 3′-region of Rrhox1 gene sequences in R. roseolus has a divergence-homogenization duality, which makes restriction fragment length polymorphism (RFLP) analysis of this region possible. Using a primer pair designed according to the 3′-regions of the RrA1-hox1 and mip genes in the A1 mating type, target PCR products were amplified from ten dikaryotic strains of R. roseolus collected from nine prefectures in Japan. RFLP patterns obtained using AluI and RsaI allowed distinguishing of all ten R. roseolus strains, indicating that the 3′-regions of Rrhox1 and mip are suitable for strain identification. © 2012 German Mycological Society and Springer.

The coordinated development of environmental pollution and the economy has become a global problem. Emission trading scheme (ETS) has become a significant environmental policy instrument, prior studies primarily concentrated on micro-level factors with specific industries; there lacks discussion on the effects of ETS on macro-level industrial structure such as industrial structure upgrading. In this paper, we first use the propensity score matching (PSM) to screen out the control group in which countries are matched with the members of the EU, and then utilize the difference-in-differences (DID) method, to examine the effects of ETS implementation on national industrial structure upgrading in the members of the EU. Empirical results show that the EU ETS may does not have a significant impact on industrial structure change, while the implementation of EU ETS has significantly promoted the upgrading of the country’s industrial structure, and the policy effect of EU ETS on industrial structure upgrading gradually increases as time goes by and there is a dynamic effect. The conclusions of this paper can be used as reference for the development of emission reduction policies in large countries with unbalanced internal development.