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"Wang, Ge"
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Monarch butterfly optimization
2019
In nature, the eastern North American monarch population is known for its southward migration during the late summer/autumn from the northern USA and southern Canada to Mexico, covering thousands of miles. By simplifying and idealizing the migration of monarch butterflies, a new kind of nature-inspired metaheuristic algorithm, called monarch butterfly optimization (MBO), a first of its kind, is proposed in this paper. In MBO, all the monarch butterfly individuals are located in two distinct lands, viz. southern Canada and the northern USA (Land 1) and Mexico (Land 2). Accordingly, the positions of the monarch butterflies are updated in two ways. Firstly, the offsprings are generated (position updating) by migration operator, which can be adjusted by the migration ratio. It is followed by tuning the positions for other butterflies by means of butterfly adjusting operator. In order to keep the population unchanged and minimize fitness evaluations, the sum of the newly generated butterflies in these two ways remains equal to the original population. In order to demonstrate the superior performance of the MBO algorithm, a comparative study with five other metaheuristic algorithms through thirty-eight benchmark problems is carried out. The results clearly exhibit the capability of the MBO method toward finding the enhanced function values on most of the benchmark problems with respect to the other five algorithms. Note that the source codes of the proposed MBO algorithm are publicly available at GitHub (
https://github.com/ggw0122/Monarch-Butterfly-Optimization
, C++/MATLAB) and MATLAB Central (
http://www.mathworks.com/matlabcentral/fileexchange/50828-monarch-butterfly-optimization
, MATLAB).
Journal Article
CDetection: CRISPR-Cas12b-based DNA detection with sub-attomolar sensitivity and single-base specificity
by
Cui, Tongtong
,
Zhou, Qi
,
Xu, Kai
in
Animal Genetics and Genomics
,
Bioinformatics
,
Biomedical and Life Sciences
2019
CRISPR-based nucleic acid detection methods are reported to facilitate rapid and sensitive DNA detection. However, precise DNA detection at the single-base resolution and its wide applications including high-fidelity SNP genotyping remain to be explored. Here we develop a Cas12b-mediated DNA detection (CDetection) strategy, which shows higher sensitivity on examined targets compared with the previously reported Cas12a-based detection platform. Moreover, we show that CDetection can distinguish differences at the single-base level upon combining the optimized tuned guide RNA (tgRNA). Therefore, our findings highlight the high sensitivity and accuracy of CDetection, which provides an efficient and highly practical platform for DNA detection.
Journal Article
Seawater‐Degradable Polymers—Fighting the Marine Plastic Pollution
by
Wang, Ge‐Xia
,
Völker, Carolin
,
Wurm, Frederik R.
in
biodegradability
,
Biodegradable materials
,
biodegradable polyesters
2021
Polymers shape human life but they also have been identified as pollutants in the oceans due to their long lifetime and low degradability. Recently, various researchers have studied the impact of (micro)plastics on marine life, biodiversity, and potential toxicity. Even if the consequences are still heavily discussed, prevention of unnecessary waste is desired. Especially, newly designed polymers that degrade in seawater are discussed as potential alternatives to commodity polymers in certain applications. Biodegradable polymers that degrade in vivo (used for biomedical applications) or during composting often exhibit too slow degradation rates in seawater. To date, no comprehensive summary for the degradation performance of polymers in seawater has been reported, nor are the studies for seawater‐degradation following uniform standards. This review summarizes concepts, mechanisms, and other factors affecting the degradation process in seawater of several biodegradable polymers or polymer blends. As most of such materials cannot degrade or degrade too slowly, strategies and innovative routes for the preparation of seawater‐degradable polymers with rapid degradation in natural environments are reviewed. It is believed that this selection will help to further understand and drive the development of seawater‐degradable polymers. Plastic pollution of the oceans is a major concern today due to the long life of commodity polymers. The degradation profiles of conventional biodegradable polymers, such as polylactide, polycaprolactone, and others in seawater, are reviewed. As many of them degrade relatively slowly, additional strategies for the development of seawater‐degradable polymers are highlighted.
Journal Article
Making “CASES” for AI in Medicine
by
Wang, Ge
2024
In this perspective, “CASES” are made for AI in medicine. The CASES mean Confidence, Adaptability, Stability, Explainability, and Security of AI systems. We underline that these CASES can be addressed not only individually but also synergistically on the large model platform and using cutting-edge diffusion-type models.
Journal Article
Elephant Herding Optimization: Variants, Hybrids, and Applications
by
Li, Juan
,
Wang, Gai-Ge
,
Lei, Hong
in
Algorithms
,
Combinatorial analysis
,
constrained optimization
2020
Elephant herding optimization (EHO) is a nature-inspired metaheuristic optimization algorithm based on the herding behavior of elephants. EHO uses a clan operator to update the distance of the elephants in each clan with respect to the position of a matriarch elephant. The superiority of the EHO method to several state-of-the-art metaheuristic algorithms has been demonstrated for many benchmark problems and in various application areas. A comprehensive review for the EHO-based algorithms and their applications are presented in this paper. Various aspects of the EHO variants for continuous optimization, combinatorial optimization, constrained optimization, and multi-objective optimization are reviewed. Future directions for research in the area of EHO are further discussed.
Journal Article
Silencing of circ_0000517 suppresses proliferation, glycolysis, and glutamine decomposition of non‐small cell lung cancer by modulating miR‐330‐5p/YY1 signal pathway
2021
In recent years, circular RNA (circRNA) has been found to be involved in a variety of cancer processes. More and more attention has been paid to the research of circRNA in lung cancer. This study aims to investigate whether circ_0000517 affected the physiology of non‐small cell lung cancer (NSCLC) and the underlying mechanism. The results demonstrated that circ_0000517 was highly expressed in lung cancer tissues and cells, and overexpression of circ_0000517 was negatively correlated with the prognosis of NSCLC patients. Silencing of circ_0000517 significantly inhibited the proliferation, glycolysis, and glutamine decomposition of NSCLC cells in vitro and repressed the growth of xenografted tumors in vivo. Moreover, knockdown of circ_0000517 attenuated the expression of PCNA, HK2, LDHA, ASCT2, and GLS1. Further study found that circ_0000517 targeted miR‐330‐5p and miR‐330‐5p targeted YY1. In addition, miR‐330‐5p inhibitor reversed inhibition of cancer cell proliferation, glycolysis, and glutamine decomposition induced by si‐circ_0000517. In conclusion, our study revealed that silencing of circ_0000517 improved the progression of NSCLC through regulating miR‐330‐5p/YY1 axis.
Journal Article
Boosting Interfacial Polarization Through Heterointerface Engineering in MXene/Graphene Intercalated-Based Microspheres for Electromagnetic Wave Absorption
2023
HighlightsrGO/MXene/TiO2/Fe2C heterointerface porous microspheres prepared via scalable method to boost polarization.Customization of hierarchical structure by precisely tuning 2D rGO/MXene intercalation.Optimal reflection loss of -67.4 dB and EAB = 5.47 GHz at low filler loading of 5 wt%. Simulations showed the benefits of 2D nanosheets intercalation on polarization loss.Multi-layer 2D material assemblies provide a great number of interfaces beneficial for electromagnetic wave absorption. However, avoiding agglomeration and achieving layer-by-layer ordered intercalation remain challenging. Here, 3D reduced graphene oxide (rGO)/MXene/TiO2/Fe2C lightweight porous microspheres with periodical intercalated structures and pronounced interfacial effects were constructed by spray-freeze-drying and microwave irradiation based on the Maxwell–Wagner effect. Such approach reinforced interfacial effects via defects introduction, porous skeleton, multi-layer assembly and multi-component system, leading to synergistic loss mechanisms. The abundant 2D/2D/0D/0D intercalated heterojunctions in the microspheres provide a high density of polarization charges while generating abundant polarization sites, resulting in boosted interfacial polarization, which is verified by CST Microwave Studio simulations. By precisely tuning the 2D nanosheets intercalation in the heterostructures, both the polarization loss and impedance matching improve significantly. At a low filler loading of 5 wt%, the polarization loss rate exceeds 70%, and a minimum reflection loss (RLmin) of −67.4 dB can be achieved. Moreover, radar cross-section simulations further confirm the attenuation ability of the optimized porous microspheres. These results not only provide novel insights into understanding and enhancing interfacial effects, but also constitute an attractive platform for implementing heterointerface engineering based on customized 2D hierarchical architectures.
Journal Article
Nuclear quantum effects of hydrogen bonds probed by tip-enhanced inelastic electron tunneling
2016
We report the quantitative assessment of nuclear quantum effects on the strength of a single hydrogen bond formed at a water-salt interface, using tip-enhanced inelastic electron tunneling spectroscopy based on a scanning tunneling microscope. The inelastic scattering cross section was resonantly enhanced by \"gating\" the frontier orbitals of water via a chlorine-terminated tip, so the hydrogen-bonding strength can be determined with high accuracy from the red shift in the oxygen-hydrogen stretching frequency of water. Isotopic substitution experiments combined with quantum simulations reveal that the anharmonic quantum fluctuations of hydrogen nuclei weaken the weak hydrogen bonds and strengthen the relatively strong ones. However, this trend can be completely reversed when a hydrogen bond is strongly coupled to the polar atomic sites of the surface.
Journal Article
Carbon‐Based Composite Phase Change Materials for Thermal Energy Storage, Transfer, and Conversion
2021
Phase change materials (PCMs) can alleviate concerns over energy to some extent by reversibly storing a tremendous amount of renewable and sustainable thermal energy. However, the low thermal conductivity, low electrical conductivity, and weak photoabsorption of pure PCMs hinder their wider applicability and development. To overcome these deficiencies and improve the utilization efficiency of thermal energy, versatile carbon materials have been increasingly considered as supporting materials to construct shape‐stabilized composite PCMs. Despite some carbon‐based composite PCMs reviews regarding thermal conductivity enhancement, a comprehensive review of carbon‐based composite PCMs does not exist. Herein, a systematic overview of recent carbon‐based composite PCMs for thermal storage, transfer, conversion (solar‐to‐thermal, electro‐to‐thermal and magnetic‐to‐thermal), and advanced multifunctional applications, including novel metal organic framework (MOF)‐derived carbon materials are provided. The current challenges and future opportunities are also highlighted. The authors hope this review can provide in‐depth insights and serve as a useful guide for the targeted design of high‐performance carbon‐based composite PCMs. This review provides a systematic overview of various carbon‐based composite PCMs for thermal energy storage, transfer, conversion (solar‐to‐thermal, electro‐to‐thermal and magnetic‐to‐thermal), and advanced multifunctional applications, including novel metal organic framework‐derived carbon materials. The current challenges and future opportunities are also highlighted.
Journal Article
miR396-OsGRFs Module Balances Growth and Rice Blast Disease-Resistance
2019
Fitness cost is a common phenomenon in rice blast disease-resistance breeding. MiR396 is a highly conserved microRNA (miRNA) family targeting Growth Regulating Factor ( OsGRF ) genes. Mutation at the target site of miR396 in certain OsGRF gene or blocking miR396 expression leads to increased grain yield. Here we demonstrated that fitness cost can be trade-off in miR396- OsGRF s module via balancing growth and immunity against the blast fungus. The accumulation of miR396 isoforms was significantly increased in a susceptible accession, but fluctuated in a resistant accession upon infection of Magnaporthe oryzae . The transgenic lines over-expressing different miR396 isoforms were highly susceptible to M. oryzae . In contrast, overexpressing target mimicry of miR396 to block its function led to enhanced resistance to M. oryzae in addition to improved yield traits. Moreover, transgenic plants overexpressing OsGRF6 , OsGRF7 , OsGRF8 , and OsGRF9 exhibited enhanced resistance to M. oryzae , but showed different alteration of growth. While overexpression of OsGRF7 led to defects in growth, overexpression of OsGRF6 , OsGRF8 , and OsGRF9 resulted in better or no significant change of yield traits. Collectively, our results indicate that miR396 negatively regulates rice blast disease- resistance via suppressing multiple OsGRF s, which in turn differentially control growth and yield. Therefore, miR396- OsGRFs could be a potential module to demolish fitness cost in rice blast disease-resistance breeding.
Journal Article