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Simulation of the solid–liquid–gas interaction during solidification is challenging due to the presence of complex phase interfaces, bubble deformation, and high liquid/gas density ratio. In this work, a hybrid phase-field lattice-Boltzmann (PFLB) approach, together with a parallel and adaptive-mesh-refinement (Para-AMR) algorithm, is developed to model interactions between the gas bubble and solid growth front during solidification. The solid growth and bubble evolution are solved by the phase-field method. Both melt flow and bubble movement are determined by a kinetic-based lattice-Boltzmann model. Bubble dynamics during alloy solidification is modeled and compared with experiments, and a good agreement is achieved for various solid/liquid interfaces including planar, cellular, and dendritic interfaces. Results show that the effect of the bubble on solid array is dependent on the solid/liquid interface morphology, bubble size, and relative position between the bubble center and dendritic tip. Two interaction mechanisms, including engulfment and entrapment, are compared, and the difference is caused mainly by the redistribution of solute. The interaction mechanism between the rising multibubbles with large deformation and the dendritic array is also discussed.

Avian leukosis (AL), a major vertically transmitted infectious disease, poses a significant challenge to the conservation and industrial development of indigenous chicken breeds in China. In this study, Chengkou mountain chickens were used as a model to systematically identify genetic markers associated with resistance to avian leukosis virus subgroup J (ALV-J) through a genome-wide association study (GWAS). Genomic DNA was extracted from 500 hens at 300 days of age, and cloacal swabs, plasma, and egg white samples were collected to assess the ALV-J infection status. A total of 325 ALV-positive (ALV+) and 175 ALV-negative (ALV−) individuals were identified. Based on 10× whole-genome resequencing and stringent quality control, 12,644,463 high-quality SNPs were obtained. GWAS revealed a significant enrichment of SNPs on chromosome 6 (Chr6), from which 218 SNPs significantly associated with ALV-J resistance and 49 candidate genes were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses showed that many of these genes, including PTPN13, TTF2, TIAL1, DLG2, FBXL7, CDH5, and CDH11, are involved in tumorigenesis and immunosuppression through the JAK/STAT signaling pathway and cell adhesion molecule pathways. Additionally, candidate genes, such as ANKH, SLC4A7, and SLC5A1, were found to potentially regulate ALV-J infection by modulating membrane transport and inflammatory responses. This study is the first to identify ALV-J resistance-associated genetic markers in Chengkou mountain chickens, revealing key genes related to immune regulation, membrane function, and tumor development. The findings provide a foundational molecular basis for disease-resistant breeding in poultry.

Avian leukosis virus subgroup J (ALV-J), an α-retrovirus, mediates infection by binding to the host-specific receptor chNHE1 (chicken sodium–hydrogen exchanger type 1), leading to immunosuppression and tumorigenesis, which severely threatens the sustainable development of the poultry industry. Studies have shown that the tryptophan residue at position 38 (W38) of the chNHE1 protein is the critical site for ALV-J infection. In this study, we employed the CRISPR/Cas9 system to construct a lentiviral vector targeting the W38 site of chNHE1, transfected it into chicken primordial germ cells (PGCs), and validated its antiviral efficacy through ALV-J infection assays, successfully establishing an in vitro gene-editing system for chicken PGCs. The constructed dual lentiviral vector efficiently targeted the W38 site. PGCs isolated from 5.5- to 7-day-old chicken embryos were suitable for in vitro gene editing. Stable fluorescence expression was observed within 24–72 h post-transfection, confirming high transfection efficiency. ALV-J challenge tests demonstrated that no viral env gene expression was detected in transfected PGCs at 48 h or 72 h post-infection, while high env expression was observed in control groups. After 7 days of infection, p27 antigen ELISA tests were negative in transfected groups but positive in controls, indicating that W38-deleted PGCs exhibited strong resistance to ALV-J. This study successfully generated ALV-J-resistant gene-edited PGCs using CRISPR/Cas9 technology, providing a novel strategy for disease-resistant poultry breeding and advancing avian gene-editing applications.

Chengkou mountain chicken, a Chinese indigenous breed, exhibits unique flavor characteristics. However, the genetic basis of its flavor precursor substances remains unexplored. We performed a genome-wide association study (GWAS) using low-coverage whole-genome sequencing (lcWGS) and genotype imputation to explore genetic markers linked to flavor precursors (nucleotides, amino acids, etc.) in Chengkou mountain chicken breast muscle. We identified 44 SNPs potentially or significantly associated with flavor precursor traits and localized 18 genes. Functional analysis revealed eight important candidate genes, including ZBTB20, RFX4, MAMLD1, SYN3, ABTB3, PRPF39, LRFN5, and DGCR14, which may play key roles in influencing flavor precursor substances. Moreover, two SNPs residing in the haplotype block (53,448,483 bp to 53,450,834 bp) on chromosome 1 were significantly associated with a di-unsaturated acyl chain (C20:2) residue and mapped to the ABTB3 gene. This study analyzes the composition of flavor precursor substances in the pectoralis major muscle of Chengkou mountain chicken. Moreover, the SNPs, haplotypes, and candidate genes identified in this study can be used to improve the accuracy of the marker-assisted selection of traits related to flavor precursor substances in the breast muscle of chicken. In addition, the candidate genes that are significantly associated with these traits will potentially lay the foundation for future genetic selection aimed at improving the flavor traits of chicken meat.

Gene editing technology, a revolutionary tool in molecular biology, enables precise modifications of genomic sequences and gene expression patterns, thereby conferring desired traits to cells or organisms. Since 2014, CRISPR/Cas9 has rapidly become the most widely used gene editing method in agricultural animals due to its high editing efficiency. Subsequently, the development of novel gene editing systems, such as base editors and prime editors, has provided enhanced precision and reduced off-target effects. These advancements have facilitated the transition of gene editing from laboratory research to clinical and agricultural applications. Gene editing has been extensively utilized to enhance production traits, improve disease resistance, facilitate disease detection, and establish disease models. This review outlines the development of gene editing technologies, discusses the advantages and limitations of key gene editing tools, and explores their applications in poultry. Furthermore, it examines the challenges and future prospects of gene editing in animal husbandry, including off-target effects, ethical concerns, and technical complexities.

We conducted this experiment with the aim of investigating the effects of different noise levels from ventilation fans on the growth and slaughter performance, meat quality, blood parameters, and feeding behavior of geese from 21 to 70 days of age. A total of 108 male geese (21-day-old) were randomly assigned to one of three conditions: a control group (no additional fan noise), low-noise treatment (65–75 dB), and high-noise treatment (85–95 dB). Each treatment included six replicates, with six geese per replicate. The results showed that neither ventilation fan noise level significantly affected growth performance, feeding behavior, slaughter performance, or major meat quality traits (p > 0.05). Compared with the control group, noise exposure significantly reduced circulating adrenocorticotropic hormone and corticosterone concentrations (p < 0.05), and the low-noise group exhibited significantly reduced cortisol concentrations (p < 0.05), while the high-noise group had increased cortisol concentrations. Under noise exposure conditions, no statistically significant effects were observed on superoxide dismutase, total antioxidant capacity, malondialdehyde concentration, catalase, and glutathione peroxidase activities compared with the control group (p > 0.05). Overall, prolonged noise stimulation (65–75 dB and 85–95 dB) alleviated stress responses in commercial geese aged 21–70 days, without negatively affecting their growth performance, slaughter performance, meat quality, or feeding behavior.

Co-infection with avian leukemia and Pullorum Disease severely compromises poultry health, yet its pathogenic mechanisms remain unclear. We employed transcriptome sequencing to analyze gene expression changes and enriched pathways in kidney, spleen, and liver tissues of Chongqing Chengkou mountain chickens under single-infection (avian leukemia virus or Pullorum Disease) and co-infection conditions. Significant differences were observed in the number and pathways of differentially expressed genes between co-infected and single-infected groups. These genes were predominantly enriched in pathways involving extracellular matrix–receptor interactions, PPAR signaling, and calcium ion signaling. RT-qPCR validation confirmed significant upregulation of MAPK10 and SQLE, alongside downregulation of genes such as FOXG1. This study identifies multiple differentially expressed genes and pathways associated with immunity and tumorigenesis, providing crucial molecular insights into the regulatory mechanisms underlying avian leukemia and Pullorum Disease co-infection.

This study investigated the effects of dietary sweet sorghum (SW) inclusion (0%, 4%, 8%, or 12%) on the growth performance, plasma biochemistry, antioxidant capacity, intestinal morphology, and duodenal digestive enzyme activity of geese. A total of 144 male geese (28 days old) were randomly divided into four groups (36 birds/group; six replicates). Experimental diets were formulated to contain 0%, 4%, 8%, or 12% SW to replace corn. The geese’s body weight and feed intake were recorded at 49 and 70 days, with samples collected at 70 days. The results showed that as SW levels increased, the geese’s average daily gain decreased during days 28–49 (p < 0.05), while their average daily feed intake (ADFI) and feed/gain ratio (F/G) increased during days 28–70 (p < 0.05). The cost of feed decreased with increasing SW levels, but the 12% SW group exhibited a higher feed cost/kg gain than the other groups (p < 0.05). The plasma biochemical parameters, antioxidant capacity, and duodenal digestive enzyme activity did not differ among the groups (p > 0.05). Geese fed 12% SW had higher duodenal villus heights than those in the 0% group (p < 0.05), and the jejunal muscularis thickness peaked in the 4% group (p < 0.05). The ileal morphology was unaffected (p > 0.05). SW increased the ADFI and F/G but had no adverse effects on plasma biochemistry, antioxidant status, or enzyme activity. Additionally, it improved duodenal and jejunal morphology. Based on the observed growth performance, feed cost/kg gain, and intestinal morphology, 8% dietary inclusion of SW is recommended.

Background Muscle is the predominant portion of any meat product, and growth performance and product quality are the core of modern breeding. The embryonic period is highly critical for muscle development, the number, shape and structure of muscle fibers are determined at the embryonic stage. Herein, we performed transcriptome analysis to reveal the law of muscle development in the embryonic stage of Chengkou Mountain Chicken at embryonic days (E) 12, 16, 19, 21. Results Diameter and area of muscle fibers exhibited significant difference at different embryonic times( P < 0.01 ). A total of 16,330 mRNAs transcripts were detected, including 109 novel mRNAs transcripts. By comparing different embryonic muscle development time points, 2,262 in E12vsE16, 5,058 in E12vsE19, 6139 in E12vsE21, 1,282 in E16vsE19, 2,920 in E16vsE21, and 646 in E19vsE21differentially expressed mRNAs were identified. It is worth noting that 7,572 mRNAs were differentially expressed. The time-series expression profile of differentially expressed genes (DEGs) showed that the rising and falling expression trends were significantly enriched. The significant enrichment trends included 3,150 DEGs. GO enrichment analysis provided three significantly enriched categories of significantly enriched differential genes, including 65 cellular components, 88 molecular functions, and 453 biological processes. Through KEGG analysis, we explored the biological metabolic pathways involved in differentially expressed genes. A total of 177 KEGG pathways were enriched, including 19 significant pathways, such as extracellular matrix-receptor interactions. Similarly, numerous pathways related to muscle development were found, including the Wnt signaling pathway ( P < 0.05 ), MAPK signalingpathway, TGF-beta signaling pathway, PI3K-Akt signaling pathway and mTOR signaling pathway. Among the differentially expressed genes, we selected those involved in developing 4-time points; notably, up-regulated genes included MYH1F , SLC25A12 , and HADHB , whereas the down-regulated genes included STMN1 , VASH2 , and TUBAL3 . Conclusions Our study explored the embryonic muscle development of the Chengkou Mountain Chicken. A large number of DEGs related to muscle development have been identified ,and validation of key genes for embryonic development and preliminary explanation of their role in muscle development. Overall, this study broadened our current understanding of the phenotypic mechanism for myofiber formation and provides valuable information for improving chicken quality.

Effects of convection (forced and natural) on dendritic evolution of the Al-Cu alloy were investigated using a phase-field lattice-Boltzmann approach. The non-linear coupled equations were solved by applying a parallel and adaptive mesh refinement algorithm. Important physical aspects including dendritic fragmentation, splitting, and formation of solute plumes were simulated. Results showed that the dendritic growth patterns under convection exhibited remarkable difference from those without convection. The presence of flow led to variation of solute diffusion and upstream–downstream dendritic growth difference, which further influenced the development of dendritic arms and multi-dendritic competitive growth. When the convection intensity was magnified, the convection-induced anisotropy became dominated, and the growth patterns changed accordingly to accommodate the local thermodynamic variation.