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result(s) for
"Wang, Yanhua"
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Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage
by
Liu, Mengyang
,
Ma, Wei
,
Zhang, Xiaomeng
in
Animal Genetics and Genomics
,
Bioinformatics
,
Biomedical and Life Sciences
2022
Background
Chinese cabbage (Brassica rapa ssp. pekinensis) experienced a whole-genome triplication event and thus has three subgenomes: least fractioned, medium fractioned, and most fractioned subgenome. Environmental changes affect leaf development, which in turn influence the yield. To improve the yield and resistance to different climate scenarios, a comprehensive understanding of leaf development is required including insights into the full diversity of cell types and transcriptional networks underlying their specificity.
Results
Here, we generate the transcriptional landscape of Chinese cabbage leaf at single-cell resolution by performing single-cell RNA sequencing of 30,000 individual cells. We characterize seven major cell types with 19 transcriptionally distinct cell clusters based on the expression of the reported marker genes. We find that genes in the least fractioned subgenome are predominantly expressed compared with those in the medium and most fractioned subgenomes in different cell types. Moreover, we generate a single-cell transcriptional map of leaves in response to high temperature. We find that heat stress not only affects gene expression in a cell type-specific manner but also impacts subgenome dominance.
Conclusions
Our study highlights the transcriptional networks in different cell types and provides a better understanding of transcriptional regulation during leaf development and transcriptional response to heat stress in Chinese cabbage.
Journal Article
Neuroprotective effect of Apelin 13 on ischemic stroke by activating AMPK/GSK-3β/Nrf2 signaling
by
Cao, Jinyi
,
Xi, Miaomiao
,
Qiao, Boling
in
AMPK/GSK-3β/Nrf2
,
Apelin 13
,
Biomedical and Life Sciences
2019
Background
Previous studies had showed that Apelin 13 could protect against apoptosis induced by ischemic/reperfusion (I/R). However, the mechanisms whereby Apelin 13 protected brain I/R remained to be elucidated. The present study was designed to determine whether Apelin 13 provided protection through AMPK/GSK-3β/Nrf2 pathway.
Methods
In vivo, the I/R model was induced and Apelin 13 was given intracerebroventricularly 15 min before reperfusion. The neurobehavioral scores, infarction volumes, and some cytokines in the brain were measured. For in vitro study, PC12 cells were used. To clarify the mechanisms, proteases inhibitors or siRNA were used. Protein levels were investigated by western blotting.
Results
The results showed that Apelin 13 treatment significantly reduced infarct size, improved neurological outcomes, decreased brain edema, and inhibited cell apoptosis, oxidative stress, and neuroinflammation after I/R. Apelin 13 significantly increased the expression of Nrf2 and the phosphorylation levels of AMPK and GSK-3β. Furthermore, in cultured PC12 cells, the same protective effects were also observed. Silencing Nrf2 gene with its siRNA abolished the Apelin 13’s prevention of I/R-induced PC12 cell injury, oxidative stress, and inflammation. Inhibition of AMPK by its siRNA decreased the level of Apelin 13-induced Nrf2 expression and diminished the protective effects of Apelin 13. The interplay relationship between GSK-3β and Nrf2 was also verified with relative overexpression. Using selective inhibitors, we further identified the upstream of AMPK/GSK-3β/Nrf2 is AR/Gα/PLC/IP3/CaMKK.
Conclusions
In conclusion, the previous results showed that Apelin 13 protected against I/R-induced ROS-mediated inflammation and oxidative stress through activating the AMPK/GSK-3β pathway by AR/Gα/PLC/IP3/CaMKK signaling, and further upregulated the expression of Nrf2-regulated antioxidant enzymes.
Journal Article
Research progress on surface antigen 1 (SAG1) of Toxoplasma gondii
2014
Toxoplasma gondii is an obligate intracellular parasitic protozoan that has a wide host range and causes a zoonotic parasitosis called toxoplasmosis. This infection causes significant morbidity, costs for care and loss of productivity and suffering. The most effective measures to minimize this parasite’s harm to patients are prompt diagnosis and treatment and preventing infection. A parasite surface antigen, SAG1, is considered an important antigen for the development of effective diagnostic tests or subunit vaccines. This review covers several aspects of this antigen, including its gene structure, contribution to host invasion, mechanisms of the immune responses and its applications for diagnosis and vaccine development. This significant progress on this antigen provides foundations for further development of more effective and precise approaches to diagnose toxoplasmosis in the clinic, and also have important implications for exploring novel measures to control toxoplasmosis in the near future.
Journal Article
Mixture effects of thiamethoxam and seven pesticides with different modes of action on honey bees (Apis mellifera)
2023
Even though honey bees in the field are routinely exposed to a complex mixture of many different agrochemicals, few studies have surveyed toxic effects of pesticide mixtures on bees. To elucidate the interactive actions of pesticides on crop pollinators, we determined the individual and joint toxicities of thiamethoxam (THI) and other seven pesticides [dimethoate (DIM), methomyl (MET),
zeta
-cypermethrin (ZCY), cyfluthrin (CYF), permethrin (PER), esfenvalerate (ESF) and tetraconazole (TET)] to honey bees (
Apis mellifera
) with feeding toxicity test. Results from the 7-days toxicity test implied that THI elicited the highest toxicity with a LC
50
data of 0.25 (0.20–0.29) μg mL
−1
, followed by MET and DIM with LC
50
data of 4.19 (3.58–4.88) and 5.30 (4.65–6.03) μg mL
−1
, respectively. By comparison, pyrethroids and TET possessed relatively low toxicities with their LC
50
data from the range of 33.78 (29.12–38.39) to 1125 (922.4–1,442) μg mL
−1
. Among 98 evaluated THI-containing binary to octonary mixtures, 29.59% of combinations exhibited synergistic effects. In contrast, 18.37% of combinations exhibited antagonistic effects on
A. mellifera
. Moreover, 54.8% pesticide combinations incorporating THI and TET displayed synergistic toxicities to the insects. Our findings emphasized that the coexistence of several pesticides might induce enhanced toxicity to honey bees. Overall, our results afforded worthful toxicological information on the combined actions of neonicotinoids and current-use pesticides on honey bees, which could accelerate farther comprehend on the possible detriments of other pesticide mixtures in agro-environment.
Journal Article
Attribution and driving force of nitrogen losses from the Taihu Lake Basin by the InVEST and GeoDetector models
2023
Quantifying temporal and spatial changes in reactive nitrogen (Nr) losses from a watershed and exploring its main drivers are the key to watershed water quality improvements. Huge Nr losses continue to threaten the safety of the water environment in the Taihu Lake Basin (TLB). Here, the InVEST and GeoDetector models were combined to estimate Nr losses in the TLB from 1990 to 2020 and explore driving forces. Different scenarios for Nr losses were compared, showing that Nr loss peaked at 181.66 × 10
3
t in 2000. The key factors affecting Nr loss are land use, followed by elevation, soil, and slope factors, and their mean
q-
values were 0.82, 0.52, 0.51, and 0.48, respectively. The scenario analysis revealed that Nr losses increased under the business-as-usual and economic development scenarios, while ecological conservation, increased nutrient use efficiency, and reduced nutrient application all contribute to a reduction in Nr losses. The findings provide a scientific reference for Nr loss control and future planning in the TLB.
Journal Article
Polarimetric HRRP recognition based on feature‐guided Transformer model
by
Han, Chang
,
Zhang, Liang
,
Li, Yang
in
Accuracy
,
Automatic target recognition
,
Computer vision and image processing techniques
2021
Polarimetric high‐resolution range profile (HRRP) holds great potential for radar automatic target recognition (RATR) owing to its capability of providing both polarimetric and spatial scattering information. In recent years, deep learning (DL) has obtained state‐of‐the‐art results in many classification tasks and has drawn great attention in the RATR field. However, as one of the most challenging tasks in RATR, small training sample case will restrict the application of DL because its superior performance generally depends on a large number of training samples. A feature‐guided deep model based on Transformer framework is proposed for polarimetric HRRP recognition with limited training samples. In the proposed model, artificial features are introduced to the attention module to guide the model focus on the range cells of HRRP with more target scattering information so as to reduce the dependence of the model on the number of training samples. Several different approaches are also studied to measure the similarity between artificial features and HRRP data to further improve the learning capacity of the model. Experimental results demonstrate that the proposed feature‐guided Transformer model modifying by Cosine similarity measure is able to achieve a better performance for polarimetric HRRP recognition with limited training samples.
Journal Article
CBCT analysis of the incidence of maxillary lateral incisor dens invaginatus and its impact on periodontal supporting tissues
2024
Background
Dens invaginatus is a developmental abnormality originating from tooth development, including coronal invaginatus and radicular invaginatus. The reported incidence varies greatly due to diagnostic techniques, classification criteria and race. The incidence of dens invaginatus in China was not clear, and the impact of dens invaginatus on periodontal support tissue were rarely reported. This study aims to clarify the incidence of maxillary lateral incisor dens invaginatus and its impact on periodontal supporting tissues.
Methods
From the cone-beam computed tomography database, images of 212 maxillary lateral incisors from 106 Chinese patients were selected. Teeth that met the Oehlers classification criteria for coronal invaginatus were recorded as coronal invaginatus, and teeth with radicular cystoid invaginatus or radicular groove were classified as radicular dens invaginatus. The complexity of radicular groove was determined by Gu’s classification standard. Both of coronal invaginatus and radicular dens invaginatus were recorded as dens invaginatus. For 15 patients with unilateral radicular dens invaginatus, the periodontal ligament area of the affected teeth and the corresponding natural teeth in the same jaw were measured and compared.
Results
The overall incidence of maxillary lateral incisor invaginatus in China is 25.0%. The incidence of coronal invaginatus is 12.3%, and the incidence of radicular dens invaginatus is 14.6%. No significant differences were observed between genders or sides. In this study, all radicular dens invaginatus exhibited as radicular groove, of which 87.1% were Gu type I, 9.7% were Gu type II, and 3.2% were Gu type III. Although the difference was not statistically significant, the average periodontal ligament area of the maxillary lateral incisor with radicular dens invaginatus was 148.93 ± 35.62mm
2
, smaller than that of the control teeth (152.28 ± 40.22mm
2
).
Conclusions
The dens invaginatus of the maxillary lateral incisor is common. There is no significant difference in the incidence between genders or between sides. The main manifestation of the radicular dens invaginatus is the radicular groove (Gu’s type I). This anatomical abnormality may reduce the periodontal ligament area. The presence of the additional root of the maxillary lateral incisor is not rare and was supposed to be highly concerned by dentists.
Journal Article
Limited Sample Radar HRRP Recognition Using FWA-GAN
by
Wang, Yanhua
,
Song, Yiheng
,
Zhang, Liang
in
Artificial neural networks
,
Availability
,
data collection
2024
In radar High-Resolution Range Profile (HRRP) target recognition, the targets of interest are always non-cooperative, posing a significant challenge in acquiring sufficient samples. This limitation results in the prevalent issue of limited sample availability. To mitigate this problem, researchers have sought to integrate handcrafted features into deep neural networks, thereby augmenting the information content. Nevertheless, existing methodologies for fusing handcrafted and deep features often resort to simplistic addition or concatenation approaches, which fail to fully capitalize on the complementary strengths of both feature types. To address these shortcomings, this paper introduces a novel radar HRRP feature fusion technique grounded in the Feature Weight Assignment Generative Adversarial Network (FWA-GAN) framework. This method leverages the generative adversarial network architecture to facilitate feature fusion in an innovative manner. Specifically, it employs the Feature Weight Assignment Model (FWA) to adaptively assign attention weights to both handcrafted and deep features. This approach enables a more efficient utilization and seamless integration of both feature modalities, thereby enhancing the overall recognition performance under conditions of limited sample availability. As a result, the recognition rate increases by over 4% compared to other state-of-the-art methods on both the simulation and experimental datasets.
Journal Article
A Novel Solid Nanocrystals Self-Stabilized Pickering Emulsion Prepared by Spray-Drying with Hydroxypropyl-β-cyclodextrin as Carriers
by
Zhang, Jifen
,
Yi, Tao
,
Wang, Yanhua
in
2-Hydroxypropyl-beta-cyclodextrin - chemistry
,
Drug Carriers - chemistry
,
Drug Carriers - pharmacokinetics
2021
A drug nanocrystals self-stabilized Pickering emulsion (NSSPE) with a unique composition and microstructure has been proven to significantly increase the bioavailability of poorly soluble drugs. This study aimed to develop a new solid NSSPE of puerarin preserving the original microstructure of NSSPE by spray-drying. A series of water-soluble solid carriers were compared and then Box-Behnken design was used to optimize the parameters of spray-drying. The drug release and stability of the optimized solid NSSPE in vitro were also investigated. The results showed that hydroxypropyl-β-cyclodextrin (HP-β-CD), rather than solid carriers commonly used in solidification of traditional Pickering emulsions, was suitable for the solid NSSPE to retain the original appearance and size of emulsion droplets after reconstitution. The amount of HP-β-CD had more influences on the solid NSSPE than the feed rate and the inlet air temperature. Fluorescence microscopy, confocal laser scanning microscopy and scanning electron microscopy showed that the reconstituted emulsion of the solid NSSPE prepared with HP-β-CD had the same core-shell structure with a core of oil and a shell of puerarin nanocrystals as the liquid NSSPE. The particle size of puerarin nanocrystal sand interfacial adsorption rate also did not change significantly. The cumulative amount of released puerarin from the solid NSSPE had no significant difference compared with the liquid NSSPE, which were both significantly higher than that of puerarin crude material. The solid NSSPE was stable for 3 months under the accelerated condition of 75% relative humidity and 40 °C. Thus, it is possible todevelop the solid NSSPE preserving the unique microstructure and the superior properties in vitro of the liquid NSSPE for poorly soluble drugs.
Journal Article
Transcriptome analysis reveals underlying immune response mechanism of fungal (Penicillium oxalicum) disease in Gastrodia elata Bl. f. glauca S. chow (Orchidaceae)
2020
Background
Gastrodia elata
Bl.
f. glauca
S. Chow is a medicinal plant.
G. elata f. glauca
is unavoidably infected by pathogens in their growth process. In previous work, we have successfully isolated and identified
Penicillium oxalicum
from fungal diseased tubers of
G. elata f. glauca
. As a widespread epidemic, this fungal disease seriously affected the yield and quality of
G. elata f. glauca
. We speculate that the healthy
G. elata F. glauca
might carry resistance genes, which can resist against fungal disease. In this study, healthy and fungal diseased mature tubers of
G. elata f. glauca
from Changbai Mountain area were used as experimental materials to help us find potential resistance genes against the fungal disease.
Results
A total of 7540 differentially expressed Unigenes (DEGs) were identified (FDR < 0.01, log2FC > 2). The current study screened 10 potential resistance genes. They were attached to transcription factors (TFs) in plant hormone signal transduction pathway and plant pathogen interaction pathway, including WRKY22, GH3, TIFY/JAZ, ERF1, WRKY33, TGA. In addition, four of these genes were closely related to jasmonic acid signaling pathway.
Conclusions
The immune response mechanism of fungal disease in
G. elata f. glauca
is a complex biological process, involving plant hormones such as ethylene, jasmonic acid, salicylic acid and disease-resistant transcription factors such as WRKY, TGA.
Journal Article