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101 result(s) for "Weissman, Sarah"
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Screening for Active Small Molecules in Mitochondrial Complex I Deficient Patient's Fibroblasts, Reveals AICAR as the Most Beneficial Compound
Congenital deficiency of the mitochondrial respiratory chain complex I (CI) is a common defect of oxidative phosphorylation (OXPHOS). Despite major advances in the biochemical and molecular diagnostics and the deciphering of CI structure, function assembly and pathomechanism, there is currently no satisfactory cure for patients with mitochondrial complex I defects. Small molecules provide one feasible therapeutic option, however their use has not been systematically evaluated using a standardized experimental system. In order to evaluate potentially therapeutic compounds, we set up a relatively simple system measuring different parameters using only a small amount of patient's fibroblasts, in glucose free medium, where growth is highly OXPOS dependent. Ten different compounds were screened using fibroblasts derived from seven CI patients, harboring different mutations.5-Aminoimidazole-4-carboxamide ribotide (AICAR) was found to be the most beneficial compound improving growth and ATP content while decreasing ROS production. AICAR also increased mitochondrial biogenesis without altering mitochondrial membrane potential (Δψ). Fluorescence microscopy data supported increased mitochondrial biogenesis and activation of the AMP activated protein kinase (AMPK). Other compounds such as; bezafibrate and oltipraz were rated as favorable while polyphenolic phytochemicals (resverastrol, grape seed extract, genistein and epigallocatechin gallate) were found not significant or detrimental. Although the results have to be verified by more thorough investigation of additional OXPHOS parameters, preliminary rapid screening of potential therapeutic compounds in individual patient's fibroblasts could direct and advance personalized medical treatment.
Managing Contributions to the Unified Astronomy Thesaurus
The Unified Astronomy Thesaurus (UAT) project managers have long defined the UAT as \"an open, interoperable, and community-supported thesaurus.\" How do we solicit the detailed, comprehensive, and consistent community feedback that is required to keep the UAT relevant? The Steering Committee for the UAT has developed a visual organizational tool that lets reviewers suggest new concepts and restructure the existing hierarchy. Researchers and librarians can use this \"Sorting Tool\" to submit contributions and feedback to the UAT. The UAT Curator adds feedback to the UAT’s GitHub Issues, which allows for tracking, searching, and referencing the suggestions. The UAT Curator implements the accepted suggestions, preparing to include them in a future release of the Unified Astronomy The saurus. This process of continual improvement ensures that the UAT project remains community supported.
Elevating MAST-Data Publications with Digital Object Identifiers (DOIs)
The use of digital object identifiers (DOIs) to identify data sets used in original research allows peer reviewers and journal editors to more easily validate research methods and verify results. Fellow astronomers can duplicate results or expand on initial findings when the precise data used in a research project are identified. Precise identification of data may allow archives and observatories to better understand how the community is accessing and combining its data to reach new scientific conclusions. Earlier studies have suggested that papers with linked data are more highly cited in the literature, providing motivation for authors to adopt more stringent and thorough data citation practices.
The Science Performance of JWST as Characterized in Commissioning
This paper characterizes the actual science performance of the James Webb Space Telescope (JWST), as determined from the six month commissioning period. We summarize the performance of the spacecraft, telescope, science instruments, and ground system, with an emphasis on differences from pre-launch expectations. Commissioning has made clear that JWST is fully capable of achieving the discoveries for which it was built. Moreover, almost across the board, the science performance of JWST is better than expected; in most cases, JWST will go deeper faster than expected. The telescope and instrument suite have demonstrated the sensitivity, stability, image quality, and spectral range that are necessary to transform our understanding of the cosmos through observations spanning from near-earth asteroids to the most distant galaxies.
The Science Performance of JWST as Characterized in Commissioning
This paper characterizes the actual science performance of the James Webb Space Telescope (JWST), as determined from the six month commissioning period. We summarize the performance of the spacecraft, telescope, science instruments, and ground system, with an emphasis on differences from pre-launch expectations. Commissioning has made clear that JWST is fully capable of achieving the discoveries for which it was built. Moreover, almost across the board, the science performance of JWST is better than expected; in most cases, JWST will go deeper faster than expected. The telescope and instrument suite have demonstrated the sensitivity, stability, image quality, and spectral range that are necessary to transform our understanding of the cosmos through observations spanning from near-earth asteroids to the most distant galaxies.
The Impact of the MAST Data Archive
The Barbara A. Mikulski Archive for Space Telescopes (MAST) hosts science-ready data products from over twenty NASA missions, plus community-contributed data collections, and other select surveys. The data support forefront research in the ultraviolet, optical, and near-infrared wavelength bands. We have constructed bibliographies for each mission from publications in nearly 40 professional journals, and have identified more than 37,000 refereed articles where investigators made a science usage of data hosted in MAST. The publication rate over the last 50 years shows that most MAST missions have had very high productivity during their in-service lifetimes, and have remained so for years or decades afterward. Annual citations to these publications, a measure of impact on research, are robust for most missions, with citations that grow over more than a decade. Most of the citations come from about 10% of articles within each mission. We examined the bibliographies of the active missions HST and JWST in greater detail. For HST the rate of archival publications exceeded those authored by the original observing teams within a decade of launch, and is now more than 3 times higher. Early indications hint that JWST archival articles could dominate the publication rate even sooner. The production of articles resulting from any given observing program can extend for decades. Programs with small and very large allocations of observing time tend to be particularly productive per unit of observing time. For HST in general, a first publication appears within 1.5 yr for 50% of observing programs, and within 3.8 yr for 80% of programs. We discuss various external factors that affect publication metrics, their strengths and limitations for measuring scientific impact, and the challenges of making meaningful comparisons of publication metrics across missions.
A Model for Data Citation in Astronomical Research using Digital Object Identifiers (DOIs)
Standardizing and incentivizing the use of digital object identifiers (DOIs) to aggregate and identify both data analyzed and data generated by a research project will advance the field of astronomy to match best practices in other research fields like geosciences and medicine. Increase in the use of DOIs will prepare the discipline for changing expectations among funding agencies and publishers, who increasingly expect accurate and thorough data citation to accompany scientific outputs. The use of DOIs ensures a robust, sustainable, and interoperable approach to data citation in which due credit is given to researchers and institutions who produce and maintain the primary data. We describe in this work the advantages of DOIs for data citation and best practices for integrating a DOI service in an astronomical archive. We report on a pilot project carried out in collaboration with AAS Journals. During the course of the 1.5 year pilot, over 75% of submitting authors opted to use the integrated DOI service to clearly identify data analyzed during their research project when prompted at the time of paper submission.
The Proposal Auto-Categorizer and Manager for Time Allocation Review at Space Telescope Science Institute
The Proposal Auto-Categorizer and Manager (PACMan) tool was written to respond to concerns on subjective flaws and potential biases in some aspects of the proposal review process for time allocation for the {\\it Hubble Space Telescope} (HST), and to partially alleviate some of the anticipated additional workload from the {\\it James Webb Space Telescope} (JWST) proposal review. PACMan is essentially a mixed-method Naive Bayesian spam filtering routine, with multiple pools representing scientific categories, that utilizes the Robinson method for combining token (or word) probabilities. PACMan was trained to make similar programmatic decisions in science category sorting, panelist selection, and proposal-to-panelists assignments to those made by individuals and committees in the Science Policies Group (SPG) at Space Telescope Science Institute. Based on training from the previous cycle's proposals, PACMan made the same science category assignments for proposals in Cycle 24 as did the SPG, an average of 87\\% of the time. Tests for similar science categorizations, based on training using proposals from additional cycles, show that this accuracy can be further improved, to the \\(>95\\%\\) level. This tool will be used to augment or replace key functions in the TAC review processes in future HST and JWST cycles.
Identifying Duplicate and Contradictory Information in Wikipedia
Our study identifies sentences in Wikipedia articles that are either identical or highly similar by applying techniques for near-duplicate detection of web pages. This is accomplished with a MapReduce implementation of minhash to identify clusters of sentences with high Jaccard similarity. We show that these clusters can be categorized into six different types, two of which are particularly interesting: identical sentences quantify the extent to which content in Wikipedia is copied and pasted, and near-duplicate sentences that state contradictory facts point to quality issues in Wikipedia.