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"Welch, Katie"
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The Cambrian (Paibian–Jiangshanian; Steptoean) dokimocephalid trilobite Deckera Frederickson, 1949 in Laurentian North America
2024
New samples of Deckera, an uncommon genus of trilobites, show that it is widespread in marine Cambrian rocks of North America in the range of ∼492–494 million years old. It could be represented by as many as nine species. The genus was originally defined in part by eyes that are elevated at or above the crest of the head region, but the oldest species are characterized by eyes that are much lower. All species share a relatively wide head region, which is now the most important diagnostic characteristic of Deckera. The Cambrian dokimocephalid trilobite genus DeckeraFrederickson, 1949 is a minor component of Steptoean (Jiangshanian) faunas of Laurentian North America. The original diagnosis emphasized strongly inflated palpebral areas of fixed cheeks and elevated palpebral lobes as important and novel characters. An appraisal of archival and new specimens from Oklahoma, Missouri, Pennsylvania, Nevada, Utah, and Newfoundland show that the genus is geographically widespread and likely represented by as many as nine species, although only two of them are named formally. Deckera cf. D. aldenensisFrederickson, 1949 from Nevada extends the stratigraphic range of Deckera down to the base of the Jiangshanian Stage, and new species from Nevada and Newfoundland take the genus down farther, into upper Paibian strata. Paibian species show that some basal members of the genus have weakly inflated, nearly flat palpebral areas with palpebral lobes that sit well below the crest of the glabella. A revised diagnosis of Deckera focuses on the broad cranidium with width across the palpebral lobes much greater than the sagittal length. Pygidia are known for a few species and all of them have an unusual flexure of the posterior margin and border. Lectotype and paralectotype specimens are designated for Deckera completa.
Journal Article
Small Amounts of Sub-Visible Aggregates Enhance the Immunogenic Potential of Monoclonal Antibody Therapeutics
by
Cloake, Edward A.
,
Welch, Katie
,
Filipe, Vasco
in
Biochemistry
,
Biocompatibility
,
Biomedical and Life Sciences
2015
Purpose
Determine the effect of minute quantities of sub-visible aggregates on the
in vitro
immunogenicity of clinically relevant protein therapeutics.
Methods
Monoclonal chimeric (rituximab) and humanized (trastuzumab) antibodies were subjected to fine-tuned stress conditions to achieve low levels (<3% of total protein) of sub-visible aggregates. The effect of stimulating human dendritic cells (DC) and CD4
+
T cells with the aggregates was measured
in vitro
using cytokine secretion, proliferation and confocal microscopy.
Results
Due to its intrinsic high clinical immunogenicity, aggregation of rituximab had minimal effects on DC activation and T cell responses compared to monomeric rituximab. However, in the case of trastuzumab (low clinical immunogenicity) small quantities of aggregates led to potent CD4
+
T cell proliferation as a result of strong cytokine and co-stimulatory signals derived from DC. Consistent with this, confocal studies showed that stir-stressed rituximab was rapidly internalised and associated with late endosomes of DC.
Conclusions
These data link minute amounts of aggregates with activation of the innate immune response, involving DC, resulting in T cell activation. Thus, when protein therapeutics with little or no clinical immunogenicity, such as trastuzumab, contain minute amounts of sub-visible aggregates, they are associated with significantly increased potential risk of clinical immunogenicity.
Journal Article
Faunal and paleoenvironmental changes at a Cambrian (Jiangshanian; Steptoean–Sunwaptan boundary interval) trilobite extinction event, in contrasting deep- and shallow-subtidal settings, Nevada and Oklahoma
by
Adrain, Jonathan M.
,
Welch, Katie F.
,
Westrop, Stephen R.
in
Archives & records
,
Biofacies
,
Biogeography
2024
Successions in Oklahoma and Nevada record trilobite extinction and replacement near the Steptoean–Sunwaptan boundary in inner-shelf and outer-shelf settings, respectively. Prior to the extinctions, different trilobite biofacies occupied these environments, but faunas became similar in composition across the environmental gradient in the overlying I. “major” and Taenicephalus zones. Faunal changes in the outer shelf at the I. “major” Zone begin at a drowning unconformity that brought dark, laminated calcisiltite and silty lime mudstone above a subtidal carbonate succession. In contrast, Oklahoma shows facies continuity in a succession of tidally influenced bioclastic carbonates. Loss of genera and a dramatic abundance “spike” of Irvingella are features of the I. “major” Zone in both regions. Turnover of biofacies occurred in the succeeding Taenicephalus Zone, with both the inner and outer shelf dominated by Orygmaspis (Parabolinoides). Blooms of orthid brachiopods in shallow water settings are underappreciated signals of faunal change in the extinction interval. Although absent from the outer shelf in Nevada, orthids became abundant enough in Oklahoma to form shell beds in the lower Taenicephalus Zone, but became rare in overlying strata. Carbon isotope stratigraphy includes a modest positive δ13C excursion that peaks in the extinction interval at 1.4‰ (Oklahoma) and 2.2‰ (Nevada), which is congruent with previous reports from Utah and Wyoming. Although consistent with regional upwelling of dysoxic waters, the absence of sedimentary evidence for significant environmental change over much of the shelf is problematic. This suggests that physical environmental change acted primarily as a catalyst for cascading ecological and biogeographic effects.
Journal Article
Alloantigen-enhanced accumulation of CCR5⁺ 'effector' regulatory T cells in the gravid uterus
by
Kallikourdis, Marinos
,
Andersen, Kristian G
,
Welch, Katie A
in
Accumulation
,
Animal migration behavior
,
Animals
2007
Regulatory T cells play an essential role in preventing fetal rejection by the maternal immune system. Here we show that, based on the expression of CCR5, regulatory T cells can be divided into a highly suppressive CCR5⁺ and a far less suppressive CCR5⁻ subpopulation, suggesting that the former represent the effector arm of regulatory T cells. Although regulatory T cells from CCR5⁻/⁻ gene deletion mutants still suppress, they are less effective mediators of maternal-fetal tolerance. The accumulation of CCR5⁺ regulatory T cells at this site appears to be enhanced by alloantigen. This finding is in stark contrast to the systemic expansion of regulatory T cells during pregnancy, which appears to be alloantigen-independent. The fact that CCR5⁺ regulatory T cells preferentially accumulate in the gravid uterus and that expression of CCR5 on regulatory T cells can be induced by activation lead us to propose that CCR5 is responsible for the accumulation of those regulatory T cells that have been activated by paternal antigens.
Journal Article
Growth and Strain Engineering of Trigonal Te for Topological Quantum Phases in Non-Symmorphic Chiral Crystals
by
Hironaka, Takayuki
,
Welch, Katie
,
Churchill, Hugh
in
Curvature
,
Electron transport
,
helical materials
2019
Strained trigonal Te has been predicted to host Weyl nodes supported by a non-symmorphic chiral symmetry. Using low-pressure physical vapor deposition, we systematically explored the growth of trigonal Te nanowires with naturally occurring strain caused by curvature of the wires. Raman spectra and high mobility electronic transport attest to the highly crystalline nature of the wires. Comparison of Raman spectra for both straight and curved nanowires indicates a breathing mode that is significantly broader and shifted in frequency for the curved wires. Strain induced by curvature during growth therefore may provide a simple pathway to investigate topological phases in trigonal Te.
Journal Article
B cells and professional APCs recruit regulatory T cells via CCL4
by
Kallikourdis, Marinos
,
Betz, Alexander G.
,
Aluvihare, Varuna
in
Animals
,
Antigen-Presenting Cells - drug effects
,
Antigen-Presenting Cells - immunology
2001
Using gene expression profiling, we show here that activation of B cells and professional antigen-presenting cells (APCs) induces the expression of common chemokines. Among these, CCL4 was the most potent chemoattractant of a CD4
+
CD25
+
T cell population, which is a characteristic phenotype of regulatory T cells. Depletion of either regulatory T cells or CCL4 resulted in a deregulated humoral response, which culminated in the production of autoantibodies. This suggested that the recruitment of regulatory T cells to B cells and APCs by CCL4 plays a central role in the normal initiation of T cell and humoral responses, and failure to do this leads to autoimmune activation.
Journal Article
Fabrication and Characterization of Black Phosphorus Terahertz Photoconductive Antennae
2024
Advancements in terahertz (THz) imaging systems, particularly for applications like post-surgical analysis of breast cancer, have led to the exploration of novel materials such as black phosphorus as the active material for a THz photoconductive antenna (PCA). This thesis, motivated by innovative techniques developed at the University of Arkansas, investigates the potential of black phosphorus as a material to enhance the performance of THz PCAs, focusing on generation efficiency and bandwidth. Previous implementations of BP as THz emitters have shown limitations, highlighting the need for thorough material characterization and optimized fabrication processes. Therefore, we adopted a dual-phase approach to this project. The initial phase involved evaluating black phosphorus supplied by various vendors to identify the most suitable source based on carrier density and mobility, essential for high-performance THz PCAs. The investigation identified HQ Graphene as the only vendor meeting the material standards for advancing BP PCA fabrication, thereby narrowing the focus for subsequent antenna development efforts. The second phase aimed to fabricate and assess the THz PCAs utilizing the selected black phosphorus. These antennas did not meet the efficiency levels of current standard emitters, with observed deficiencies in pulse peak amplitude and emission delay. This suggests a critical look into the scattering centers and carrier concentration, pivotal for optimizing the energy conversion through carrier recombination in THz generation. This thesis contributes to the ongoing dialogue on material innovation for THz antenna technology by providing a detailed investigation of the fabrication challenges and characterization of black phosphorus as a promising, yet demanding, material for future terahertz photoconductive antenna applications.
Dissertation
Growth and Strain Engineering of Trigonal Te for Topological Quantum Phases in Non-Symmorphic Chiral Crystals
by
Hironaka, Takayuki
,
Welch, Katie
,
Churchill, Hugh
in
helical materials
,
MATERIALS SCIENCE
,
nanowire
2019
Strained trigonal Te has been predicted to host Weyl nodes supported by a non-symmorphic chiral symmetry. Using low-pressure physical vapor deposition, we systematically explored the growth of trigonal Te nanowires with naturally occurring strain caused by curvature of the wires. Raman spectra and high mobility electronic transport attest to the highly crystalline nature of the wires. Comparison of Raman spectra for both straight and curved nanowires indicates a breathing mode that is significantly broader and shifted in frequency for the curved wires. Strain induced by curvature during growth therefore may provide a simple pathway to investigate topological phases in trigonal Te.
Journal Article