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"Welch, R"
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Roles of mitochondria in the hallmarks of metastasis
Although mitochondrial contributions to cancer have been recognised for approximately a century, given that mitochondrial DNA (mtDNA) is dwarfed by the size of the nuclear genome (nDNA), nuclear genetics has represented a focal point in cancer biology, often at the expense of mtDNA and mitochondria. However, genomic sequencing and advances in in vivo models underscore the importance of mtDNA and mitochondria in cancer and metastasis. In this review, we explore the roles of mitochondria in the four defined ‘hallmarks of metastasis’: motility and invasion, microenvironment modulation, plasticity and colonisation. Biochemical processes within the mitochondria of both cancer cells and the stromal cells with which they interact are critical for each metastatic hallmark. We unravel complex dynamics in mitochondrial contributions to cancer, which are context-dependent and capable of either promoting metastasis or being leveraged to prevent it at various points of the metastatic cascade. Ultimately, mitochondrial contributions to cancer and metastasis are rooted in the capacity of these organelles to tune metabolic and genetic responses to dynamic microenvironmental cues.
Journal Article
ASEAN industries and the challenge from China
\"This book explores the impact of the rise of China on South East Asia, addressing the consequences for some of Asias key economic sectors, including educational services, bio-technology, financial services, and the food industry\"-- Provided by publisher.
Book
Breeding for micronutrients in staple food crops from a human nutrition perspective
Over three billion people are currently micronutrient (i.e. micronutrient elements and vitamins) malnourished, resulting in egregious societal costs including learning disabilities among children, increased morbidity and mortality rates, lower worker productivity, and high healthcare costs, all factors diminishing human potential, felicity, and national economic development. Nutritional deficiencies (e.g. iron, zinc, vitamin A) account for almost two‐thirds of the childhood death worldwide. Most of those afflicted are dependent on staple crops for their sustenance. Importantly, these crops can be enriched (i.e. ‘biofortified’) with micronutrients using plant breeding and/or transgenic strategies, because micronutrient enrichment traits exist within their genomes that can to used for substantially increasing micronutrient levels in these foods without negatively impacting crop productivity. Furthermore, ‘proof of concept’ studies have been published using transgenic approaches to biofortify staple crops (e.g. high β‐carotene ‘golden rice’ grain, high ferritin‐Fe rice grain, etc). In addition, micronutrient element enrichment of seeds can increase crop yields when sowed to micronutrient‐poor soils, assuring their adoption by farmers. Bioavailability issues must be addressed when employing plant breeding and/or transgenic approaches to reduce micronutrient malnutrition. Enhancing substances (e.g. ascorbic acid, S‐containing amino acids, etc) that promote micronutrient bioavailability or decreasing antinutrient substances (e.g. phytate, polyphenolics, etc) that inhibit micronutrient bioavailability, are both options that could be pursued, but the latter approach should be used with caution. The world’s agricultural community should adopt plant breeding and other genetic technologies to improve human health, and the world’s nutrition and health communities should support these efforts. Sustainable solutions to this enormous global problem of ‘hidden hunger’ will not come without employing agricultural approaches.
Journal Article
Bioinformatic Identification and Analysis of Extensins in the Plant Kingdom
Extensins (EXTs) are a family of plant cell wall hydroxyproline-rich glycoproteins (HRGPs) that are implicated to play important roles in plant growth, development, and defense. Structurally, EXTs are characterized by the repeated occurrence of serine (Ser) followed by three to five prolines (Pro) residues, which are hydroxylated as hydroxyproline (Hyp) and glycosylated. Some EXTs have Tyrosine (Tyr)-X-Tyr (where X can be any amino acid) motifs that are responsible for intramolecular or intermolecular cross-linkings. EXTs can be divided into several classes: classical EXTs, short EXTs, leucine-rich repeat extensins (LRXs), proline-rich extensin-like receptor kinases (PERKs), formin-homolog EXTs (FH EXTs), chimeric EXTs, and long chimeric EXTs. To guide future research on the EXTs and understand evolutionary history of EXTs in the plant kingdom, a bioinformatics study was conducted to identify and classify EXTs from 16 fully sequenced plant genomes, including Ostreococcus lucimarinus, Chlamydomonas reinhardtii, Volvox carteri, Klebsormidium flaccidum, Physcomitrella patens, Selaginella moellendorffii, Pinus taeda, Picea abies, Brachypodium distachyon, Zea mays, Oryza sativa, Glycine max, Medicago truncatula, Brassica rapa, Solanum lycopersicum, and Solanum tuberosum, to supplement data previously obtained from Arabidopsis thaliana and Populus trichocarpa. A total of 758 EXTs were newly identified, including 87 classical EXTs, 97 short EXTs, 61 LRXs, 75 PERKs, 54 FH EXTs, 38 long chimeric EXTs, and 346 other chimeric EXTs. Several notable findings were made: (1) classical EXTs were likely derived after the terrestrialization of plants; (2) LRXs, PERKs, and FHs were derived earlier than classical EXTs; (3) monocots have few classical EXTs; (4) Eudicots have the greatest number of classical EXTs and Tyr-X-Tyr cross-linking motifs are predominantly in classical EXTs; (5) green algae have no classical EXTs but have a number of long chimeric EXTs that are absent in embryophytes. Furthermore, phylogenetic analysis was conducted of LRXs, PERKs and FH EXTs, which shed light on the evolution of three EXT classes.
Journal Article
Rice yields in tropical/subtropical Asia exhibit large but opposing sensitivities to minimum and maximum temperatures
Data from farmer-managed fields have not been used previously to disentangle the impacts of daily minimum and maximum temperatures and solar radiation on rice yields in tropical/subtropical Asia. We used a multiple regression model to analyze data from 227 intensively managed irrigated rice farms in six important rice-producing countries. The farm-level detail, observed over multiple growing seasons, enabled us to construct farm-specific weather variables, control for unobserved factors that either were unique to each farm but did not vary over time or were common to all farms at a given site but varied by season and year, and obtain more precise estimates by including farm- and site-specific economic variables. Temperature and radiation had statistically significant impacts during both the vegetative and ripening phases of the rice plant. Higher minimum temperature reduced yield, whereas higher maximum temperature raised it; radiation impact varied by growth phase. Combined, these effects imply that yield at most sites would have grown more rapidly during the high-yielding season but less rapidly during the low-yielding season if observed temperature and radiation trends at the end of the 20th century had not occurred, with temperature trends being more influential. Looking ahead, they imply a net negative impact on yield from moderate warming in coming decades. Beyond that, the impact would likely become more negative, because prior research indicates that the impact of maximum temperature becomes negative at higher levels. Diurnal temperature variation must be considered when investigating the impacts of climate change on irrigated rice in Asia.
Journal Article
Long-term efficacy of psychological treatments for binge eating disorder
The long-term efficacy of psychological treatments for binge eating disorder remains largely unknown.
To examine the long-term efficacy of out-patient group cognitive-behavioural therapy (CBT) and group interpersonal psychotherapy (IPT) for binge eating disorder and to analyse predictors of long-term non-response.
Ninety people with binge eating disorder were assessed 4 years after treatment cessation within a randomised trial (trial registration: NCT01208272).
Participants showed substantial long-term recovery, partial remission, clinically significant improvement and significant reductions in associated psychopathology, despite relapse tendencies in single secondary outcomes. Body mass index remained stable. While the IPT group demonstrated an improvement in eating disorder symptoms over the follow-up period, the CBT group reported a worsening of symptoms, but treatments did not differ at any time point.
The results document the long-term efficacy of out-patient CBT and IPT for binge eating disorder. Further research is warranted to elucidate the time course and mechanisms of change of these treatments for binge eating disorder.
Journal Article
Predicting conifer establishment post wildfire in mixed conifer forests of the North American Mediterranean‐climate zone
Due to fire suppression policies, timber harvest, and other management practices over the last century, many low‐ to mid‐elevation forests in semiarid parts of the western United States have accumulated high fuel loads and dense, multi‐layered canopies that are dominated by shade‐tolerant and fire‐sensitive conifers. To a great extent, the future status of western US forests will depend on tree species’ responses to patterns and trends in fire activity and fire behavior and postfire management decisions. This is especially the case in the North American Mediterranean‐climate zone ( NAMCZ ), which supports the highest precipitation variability in North America and a 4‐ to 6‐month annual drought, and has seen greater‐than‐average increases in air temperature and fire activity over the last three decades. We established 1490 survey plots in 14 burned areas on 10 National Forests across a range of elevations, forest types, and fire severities in the central and northern NAMCZ to provide insight into factors that promote natural tree regeneration after wildfires and the differences in postfire responses of the most common conifer species. We measured site characteristics, seedling densities, woody shrub, and tree growth. We specified a zero‐inflated negative binomial mixed model with random effects to understand the importance of each measured variable in predicting conifer regeneration. Across all fires, 43% of all plots had no conifer regeneration. Ten of the 14 fires had median conifer seedling densities that did not meet Forest Service stocking density thresholds for mixed conifer forests. When regeneration did occur, it was dominated by shade‐tolerant but fire‐sensitive firs ( Abies spp.), Douglas‐fir ( Pseudotsuga menziesii ) and incense cedar ( Calocedrus decurrens ). Seedling densities of conifer species were lowest in sites that burned at high severity, principally due to the biotic consequences of high severity fire, for example, increased distances to live seed trees and competition with fire‐following shrubs. We developed a second model specifically for forest managers and restoration practitioners who work in yellow pine and mixed conifer forests in the central NAMCZ to assess potential natural regeneration in the years immediately following a fire, allowing them to prioritize which areas may need active postfire forest restoration and supplemental planting.
Journal Article