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"Wen-Pin Yang"
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Genetic regulation of mouse liver metabolite levels
2014
We profiled and analyzed 283 metabolites representing eight major classes of molecules including Lipids, Carbohydrates, Amino Acids, Peptides, Xenobiotics, Vitamins and Cofactors, Energy Metabolism, and Nucleotides in mouse liver of 104 inbred and recombinant inbred strains. We find that metabolites exhibit a wide range of variation, as has been previously observed with metabolites in blood serum. Using genome‐wide association analysis, we mapped 40% of the quantified metabolites to at least one locus in the genome and for 75% of the loci mapped we identified at least one candidate gene by local expression QTL analysis of the transcripts. Moreover, we validated 2 of 3 of the significant loci examined by adenoviral overexpression of the genes in mice. In our GWAS results, we find that at significant loci the peak markers explained on average between 20 and 40% of variation in the metabolites. Moreover, 39% of loci found to be regulating liver metabolites in mice were also found in human GWAS results for serum metabolites, providing support for similarity in genetic regulation of metabolites between mice and human. We also integrated the metabolomic data with transcriptomic and clinical phenotypic data to evaluate the extent of co‐variation across various biological scales.
Synopsis
Mouse liver metabolites were quantified by mass spectrometry and mapped by genome‐wide association. Genetic factors were shown to contribute substantially to metabolite levels and adenoviral overexpression validated several of the identified loci.
Liver metabolites exhibit a wide range of variation, indicating strong genetic influences.
Approximately 40% of metabolites are estimated to be regulated by genetic factors.
A significant overlap was observed between genetic factors regulating mouse liver metabolites and genetic factors regulating human serum metabolites.
Metabolite levels correlated significantly both with each other and with other phenotypes such as transcript levels and physiological traits.
Graphical Abstract
Mouse liver metabolites were quantified by mass spectrometry and mapped by genome‐wide association. Genetic factors were shown to contribute substantially to metabolite levels and adenoviral overexpression validated several of the identified loci.
Journal Article
Identification of Inflammatory Gene Modules Based on Variations of Human Endothelial Cell Responses to Oxidized Lipids
by
He, Aiqing
,
Yang, Wen-Pin
,
Patel, Shilpa
in
Activating Transcription Factor 4 - genetics
,
Atherosclerosis
,
Biological Sciences
2006
Oxidized phospholipids are thought to promote atherogenesis by stimulating endothelial cells (ECs) to produce inflammatory cytokines, such as IL-8. In studies with mouse models, we previously demonstrated that genetic variation in inflammatory responses of endothelial cells to oxidized lipids contributes importantly to atherosclerosis susceptibility. We now show that similar variations occur in cultured aortic ECs derived from multiple heart transplant donors. These variations were stably maintained between passages and, thus, reflect either genetic or epigenetic regulatory differences. Expression array analysis of aortic EC cultures derived from 12 individuals revealed that >1,000 genes were regulated by oxidized phospholipids. We have used the observed variations in the sampled population to construct a gene coexpression network comprised of 15 modules of highly connected genes. We show that several identified modules are significantly enriched in genes for known pathways and confirm a module enriched for unfolded protein response (UPR) genes using siRNA and the UPR inducer tunicamycin. On the basis of the constructed network, we predicted that a gene of unknown function (MGC4504) present in the UPR module is a target for UPR transcriptional activator ATF4. Our data also indicate that IL-8 is present in the UPR module and is regulated, in part, by the UPR. We validate these by using siRNA. In conclusion, we show that interindividual variability can be used to group genes into pathways and predict gene-gene regulatory relationships, thus identifying targets potentially involved in susceptibility to common diseases such as atherosclerosis.
Journal Article
11β-Hydroxysteroid Dehydrogenase Type 1 Gene Knockout Attenuates Atherosclerosis and In Vivo Foam Cell Formation in Hyperlipidemic apoE−/− Mice
by
Lupisella, John A.
,
He, Aiqing
,
Shipkova, Petia A.
in
11-beta-Hydroxysteroid Dehydrogenase Type 1 - genetics
,
11-beta-Hydroxysteroid Dehydrogenase Type 1 - metabolism
,
11β-Hydroxysteroid dehydrogenase
2013
Chronic glucocorticoid excess has been linked to increased atherosclerosis and general cardiovascular risk in humans. The enzyme 11β-hydroxysteroid dehydrogenase type 1 (11βHSD1) increases active glucocorticoid levels within tissues by catalyzing the conversion of cortisone to cortisol. Pharmacological inhibition of 11βHSD1 has been shown to reduce atherosclerosis in murine models. However, the cellular and molecular details for this effect have not been elucidated.
To examine the role of 11βHSD1 in atherogenesis, 11βHSD1 knockout mice were created on the pro-atherogenic apoE⁻/⁻ background. Following 14 weeks of Western diet, aortic cholesterol levels were reduced 50% in 11βHSD1⁻/⁻/apoE⁻/⁻ mice vs. 11βHSD1⁺/⁺/apoE⁻/⁻ mice without changes in plasma cholesterol. Aortic 7-ketocholesterol content was reduced 40% in 11βHSD1⁻/⁻/apoE⁻/⁻ mice vs. control. In the aortic root, plaque size, necrotic core area and macrophage content were reduced ∼30% in 11βHSD1⁻/⁻/apoE⁻/⁻mice. Bone marrow transplantation from 11βHSD1⁻/⁻/apoE⁻/⁻ mice into apoE⁻/⁻ recipients reduced plaque area 39-46% in the thoracic aorta. In vivo foam cell formation was evaluated in thioglycollate-elicited peritoneal macrophages from 11βHSD1⁺/⁺/apoE⁻/⁻ and 11βHSD1⁻/⁻/apoE⁻/⁻ mice fed a Western diet for ∼5 weeks. Foam cell cholesterol levels were reduced 48% in 11βHSD1⁻/⁻/apoE⁻/⁻ mice vs. control. Microarray profiling of peritoneal macrophages revealed differential expression of genes involved in inflammation, stress response and energy metabolism. Several toll-like receptors (TLRs) were downregulated in 11βHSD1⁻/⁻/apoE⁻/⁻ mice including TLR 1, 3 and 4. Cytokine release from 11βHSD1⁻/⁻/apoE⁻/⁻-derived peritoneal foam cells was attenuated following challenge with oxidized LDL.
These findings suggest that 11βHSD1 inhibition may have the potential to limit plaque development at the vessel wall and regulate foam cell formation independent of changes in plasma lipids. The diminished cytokine response to oxidized LDL stimulation is consistent with the reduction in TLR expression and suggests involvement of 11βHSD1 in modulating binding of pro-atherogenic TLR ligands.
Journal Article
Muraglitazar, a Novel Dual (α/γ) Peroxisome Proliferator–Activated Receptor Activator, Improves Diabetes and Other Metabolic Abnormalities and Preserves β-Cell Function in db/db Mice
2006
Muraglitazar, a Novel Dual (α/γ) Peroxisome Proliferator–Activated Receptor Activator, Improves Diabetes and Other Metabolic
Abnormalities and Preserves β-Cell Function in db/db Mice
Thomas Harrity 1 ,
Dennis Farrelly 1 ,
Aaron Tieman 1 ,
Cuixia Chu 1 ,
Lori Kunselman 1 ,
Liqun Gu 1 ,
Randolph Ponticiello 1 ,
Michael Cap 1 ,
Fucheng Qu 2 ,
Chunning Shao 2 ,
Wei Wang 2 ,
Hao Zhang 2 ,
William Fenderson 3 ,
Sean Chen 2 ,
Pratik Devasthale 2 ,
Yoon Jeon 2 ,
Ramakrishna Seethala 1 ,
Wen-Pin Yang 3 ,
Jimmy Ren 1 ,
Min Zhou 1 ,
Denis Ryono 2 ,
Scott Biller 2 ,
Kasim A. Mookhtiar 1 ,
John Wetterau 1 ,
Richard Gregg 1 ,
Peter T. Cheng 2 and
Narayanan Hariharan 1
1 Department of Metabolic Diseases Biology, Bristol-Myers Squibb Pharmaceutical Research Institute, Princeton, New Jersey
2 Department of Metabolic Diseases Chemistry, Bristol-Myers Squibb Pharmaceutical Research Institute, Princeton, New Jersey
3 Department of Applied Genomics, Bristol-Myers Squibb Pharmaceutical Research Institute, Princeton, New Jersey
Address correspondence and reprint requests to Narayanan Hariharan, PhD, Metabolic Diseases, HWP-21-2.02, Bristol-Myers Squibb
Pharmaceutical Research Institute, Princeton, NJ 08543. E-mail: narayanan.hariharan{at}bms.com
Abstract
Muraglitazar, a novel dual (α/γ) peroxisome proliferator–activated receptor (PPAR) activator, was investigated for its antidiabetic
properties and its effects on metabolic abnormalities in genetically obese diabetic db/db mice. In db/db mice and normal mice, muraglitazar treatment modulates the expression of PPAR target genes in white adipose tissue and liver.
In young hyperglycemic db/db mice, muraglitazar treatment (0.03–50 mg · kg −1 · day −1 for 2 weeks) results in dose-dependent reductions of glucose, insulin, triglycerides, free fatty acids, and cholesterol.
In older hyperglycemic db/db mice, longer-term muraglitazar treatment (30 mg · kg −1 · day −1 for 4 weeks) prevents time-dependent deterioration of glycemic control and development of insulin deficiency. In severely
hyperglycemic db/db mice, muraglitazar treatment (10 mg · kg −1 · day −1 for 2 weeks) improves oral glucose tolerance and reduces plasma glucose and insulin levels. In addition, treatment increases
insulin content in the pancreas. Finally, muraglitazar treatment increases abnormally low plasma adiponectin levels, increases
high–molecular weight adiponectin complex levels, reduces elevated plasma corticosterone levels, and lowers elevated liver
lipid content in db/db mice. The overall conclusions are that in db/db mice, the novel dual (α/γ) PPAR activator muraglitazar 1 ) exerts potent and efficacious antidiabetic effects, 2 ) preserves pancreatic insulin content, and 3 ) improves metabolic abnormalities such as hyperlipidemia, fatty liver, low adiponectin levels, and elevated corticosterone
levels.
ACO, acyl coenzyme-A oxidase
FFA, free fatty acid
HMW, high molecular weight
LMW, low molecular weight
MMW, medium molecular weight
PPAR, peroxisome proliferator–activated receptor
WAT, white adipose tissue
Footnotes
S.B. is currently affiliated with Novartis Institute Bio-Med Research, Cambridge, Massachusetts. K.A.M. is currently affiliated
with Advinus Therapeutics, Pune, India. J.W. is currently affiliated with the Department of Cardiovascular Pharmaceuticals,
Pfizer, Ann Arbor, Michigan.
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore
be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Accepted September 26, 2005.
Received May 23, 2005.
DIABETES
Journal Article
KvLQT1, a Voltage-Gated Potassium Channel Responsible for Human Cardiac Arrhythmias
by
Yang, Wen-Pin
,
Conder, Mary Lee
,
Little, Wayne A.
in
Amino Acid Sequence
,
Amino acids
,
Animals
1997
The clinical features of long QT syndrome result from episodic life-threatening cardiac arrhythmias, specifically the polymorphic ventricular tachycardia torsades de pointes. KVLQT1 has been established as the human chromosome 11-linked gene responsible for more than 50% of inherited long QT syndrome. Here we describe the cloning of a full-length KVLQT1 cDNA and its functional expression. KVLQT1 encodes a 676-amino acid polypeptide with structural characteristics similar to voltage-gated potassium channels. Expression of KvLQT1 in Xenopus oocytes and in human embryonic kidney cells elicits a rapidly activating, K+-selective outward current. The IKr-specific blockers, E-4031 and dofetilide, do not inhibit KvLQT1, whereas clofilium, a class III antiarrhythmic agent with the propensity to induce torsades de pointes, substantially inhibits the current. Elevation of cAMP levels in oocytes nearly doubles the amplitude of KvLQT1 currents. Coexpression of minK with KvLQT1 results in a conductance with pharmacological and biophysical properties more similar to IKsthan other known delayed rectifier K+currents in the heart.
Journal Article
Abatacept Does Not Induce Direct Gene Expression Changes in Antigen-Presenting Cells
by
He, Aiqing
,
Yang, Wen-Pin
,
Suchard, Suzanne J
in
Abatacept
,
Antigen Presentation
,
Antigen Presentation - drug effects
2009
Background It has been proposed that ligation of CD80 and CD86 induces reverse signaling into antigen-presenting cells. In this study, we tested the ability of abatacept, a soluble human fusion protein comprising the extracellular domain of cytotoxic T lymphocyte antigen 4 and a fragment of the Fc domain of IgG₁, to activate antigen-presenting cells by measuring changes in global transcriptional responses. Methods Affymetrix chips were used to measure gene expression levels using mRNA isolated from immature and mature human dendritic cells and a B cell line following 6 h of treatment with abatacept. Results In contrast to robust transcriptional responses induced by the control treatment phorbol-12-myristate-13-acetate, abatacept induced minimal gene changes in three different populations of antigen-presenting cells. Furthermore, no gene changes were observed in response to belatacept, a modified version of abatacept that binds with higher avidity to CD80 and CD86. Conclusions We conclude that reverse signaling in antigen-presenting cells is unlikely to occur in response to either abatacept or belatacept, thereby supporting the modulation of CD28 signaling on T cells as the main mechanism of action for these therapeutics.
Journal Article
11beta-Hydroxysteroid Dehydrogenase Type 1 Gene Knockout Attenuates Atherosclerosis and In Vivo Foam Cell Formation in Hyperlipidemic apoE.sup.-/- Mice
by
He, Aiqing
,
Yang, Wen-Pin
,
Yang, Richard
in
Atherosclerosis
,
Genetic aspects
,
Glucocorticoids
2013
Background Chronic glucocorticoid excess has been linked to increased atherosclerosis and general cardiovascular risk in humans. The enzyme 11[beta]-hydroxysteroid dehydrogenase type 1 (11[beta]HSD1) increases active glucocorticoid levels within tissues by catalyzing the conversion of cortisone to cortisol. Pharmacological inhibition of 11[beta]HSD1 has been shown to reduce atherosclerosis in murine models. However, the cellular and molecular details for this effect have not been elucidated. Methodology/Principal Findings To examine the role of 11[beta]HSD1 in atherogenesis, 11[beta]HSD1 knockout mice were created on the pro-atherogenic apoE.sup.-/- background. Following 14 weeks of Western diet, aortic cholesterol levels were reduced 50% in 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice vs. 11[beta]HSD1.sup.+/+ /apoE.sup.-/- mice without changes in plasma cholesterol. Aortic 7-ketocholesterol content was reduced 40% in 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice vs. control. In the aortic root, plaque size, necrotic core area and macrophage content were reduced ~30% in 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice. Bone marrow transplantation from 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice into apoE.sup.-/- recipients reduced plaque area 39-46% in the thoracic aorta. In vivo foam cell formation was evaluated in thioglycollate-elicited peritoneal macrophages from 11[beta]HSD1.sup.+/+ /apoE.sup.-/- and 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice fed a Western diet for ~5 weeks. Foam cell cholesterol levels were reduced 48% in 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice vs. control. Microarray profiling of peritoneal macrophages revealed differential expression of genes involved in inflammation, stress response and energy metabolism. Several toll-like receptors (TLRs) were downregulated in 11[beta]HSD1.sup.-/- /apoE.sup.-/- mice including TLR 1, 3 and 4. Cytokine release from 11[beta]HSD1.sup.-/- /apoE.sup.-/- -derived peritoneal foam cells was attenuated following challenge with oxidized LDL. Conclusions These findings suggest that 11[beta]HSD1 inhibition may have the potential to limit plaque development at the vessel wall and regulate foam cell formation independent of changes in plasma lipids. The diminished cytokine response to oxidized LDL stimulation is consistent with the reduction in TLR expression and suggests involvement of 11[beta]HSD1 in modulating binding of pro-atherogenic TLR ligands.
Journal Article
Modulation Doping Enables Ultrahigh Power Factor and Thermoelectric ZT in n‐Type Bi2Te2.7Se0.3
2022
Bismuth telluride‐based thermoelectric (TE) materials are historically recognized as the best p‐type (ZT = 1.8) TE materials at room temperature. However, the poor performance of n‐type (ZT≈1.0) counterparts seriously reduces the efficiency of the device. Such performance imbalance severely impedes its TE applications either in electrical generation or refrigeration. Here, a strategy to boost n‐type Bi2Te2.7Se0.3 crystals up to ZT = 1.42 near room temperature by a two‐stage process is reported, that is, step 1: stabilizing Seebeck coefficient by CuI doping; step 2: boosting power factor (PF) by synergistically optimizing phonon and carrier transport via thermal‐driven Cu intercalation in the van der Waals (vdW) gaps. Theoretical ab initio calculations disclose that these intercalated Cu atoms act as modulation doping and contribute conduction electrons of wavefunction spatially separated from the Cu atoms themselves, which simultaneously lead to large carrier concentration and high mobility. As a result, an ultra‐high PF ≈63.5 µW cm−1 K−2 at 300 K and a highest average ZT = 1.36 at 300–450 K are realized, which outperform all n‐type bismuth telluride materials ever reported. The work offers a new approach to improving n‐type layered TE materials. The intercalated Cu atoms in the Bi2Te2.7Se0.3 structure act as modulation doping and effectively improve carrier mobility while maintaining the carrier concentration similar to that in the uniformly doped sample. A record‐high ZT of 1.42 at 375 K is successfully realized in (CuI)0.002Bi2Te2.7Se0.3 + 0.2 % Cu.
Journal Article
Personality preferences and stress perception among nursing students in different nursing programmes: a cross-sectional study
by
Li, Yuh-Shiow
,
Yang, Bao-Huan
,
Mills, Mary Etta C.
in
Academic achievement
,
Adult
,
Attrition (Research Studies)
2025
Background
Understanding personality preferences is crucial for guiding healthcare education and the stress management strategies of nursing students. While stress in nursing education has been well studied, its relationship with personality preferences, particularly in clinical settings, has been underexplored. This study aims to investigate the relationship between personality preferences and stress perception among nursing students in three different nursing programmes.
Methods
This cross-sectional study recruited 780 nursing students. We used structured questionnaires to collect data on demographics, personality preferences, and stress perception. The Myers–Briggs Type Indicator (MBTI) was used to measure personality preferences across four dimensions: extraversion/introversion, sensing/intuition, thinking/feeling, and judging/perceiving. The Chinese version of the MBTI and the Nurse Stress Checklist were also employed. Statistical analyses included descriptive statistics, one-way analysis of variance, and independent t-tests.
Results
Three common personality preferences were identified: extraversion, intuition, feeling, and perceiving; introversion, sensing, thinking, and judging; and introversion, sensing, feeling, and judging. The findings indicate that stress was significantly related to personality preferences. There were significant differences in the stress scores and the extraversion/introversion and thinking/feeling subscales. However, no significant differences in stress levels were observed across different nursing programmes.
Conclusions
Each personality trait exhibited specific stress coping mechanisms. Addressing students' stress is crucial because it can lead to academic burnout and attrition. This study's findings can inform strategies to reduce stress while accommodating students' personality traits, ultimately enhancing student success in nursing programmes.
Journal Article
An Empirical Study on Customer Segmentation by Purchase Behaviors Using a RFM Model and K-Means Algorithm
2020
In this paper, we base our research by dealing with a real-world problem in an enterprise. A RFM (recency, frequency, and monetary) model and K-means clustering algorithm are utilized to conduct customer segmentation and value analysis by using online sales data. Customers are classified into four groups based on their purchase behaviors. On this basis, different CRM (customer relationship management) strategies are brought forward to gain a high level of customer satisfaction. The effectiveness of our method proposed in this paper is supported by improvement results of some key performance indices such as the growth of active customers, total purchase volume, and the total consumption amount.
Journal Article