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Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change.

In the High Arctic, nutrients are the most limiting resources, so terrestrial vegetation is of low complexity and grows slowly. However, locally, large seabird colonies increase soil fertility by deposition of faeces, supporting the development of rich and fast-growing plant communities. Here, we assessed how seabird colonies affected ecological niche segregation of plants, across the fertilisation gradient. Study sites were located near five little auk colonies, distributed longitudinally across the Svalbard archipelago. We described vascular plant composition and identified 13 environmental variables, based on which, we calculated and tested the niche overlap (NO) between the 18 most frequent species. Based on the hierarchical classification of the NO matrix, we distinguished typical High Arctic Vegetation (HAV), and Bird-Cliff Vegetation (BCV). The BCV was characterised by higher average NO and soil δ 15 N compared to HAV. The highest NO values across the fertilisation gradient were found on the border between the distinguished communities and were positively correlated with species diversity. We suggest that in the High Arctic, seabirds-delivered nutrients lead to the development of separate plant communities through the mechanism of avoiding inter-species competition, while simultaneous high species diversity and NO are related to high facilitation between plants on the border between the communities.

In the era of climate change-related restructuring of planktonic protist communities, it is especially important to identify possible shifts in their taxonomic composition. While traditional microscopy-based morphological classification is time-consuming and requires experienced taxonomists, metabarcoding seems to substantially accelerate the determination of taxonomic composition. In this study, based on samples collected in summer 2019 from the West Spitsbergen Current, we analysed planktonic protists using both methods. Metabarcoding, based on high-throughput sequencing of the V4 region of the 18S rRNA gene, resulted in a much higher number of operational taxonomic units (OTUs) and sample diversity than microscopy, although the resolution of taxonomic identification ranged from species to phyla. Most morphology-based identification was performed at the species or genus level, additionally allowing us to include information about dominants and size fractions. The highest proportion of 45% shared taxa by both methods was recorded at the class level. The composition of dominant protists differed between the approaches, with most similarities being observed in Bacillariophyceae, for which two genera, Thalassiosira and Eucampia , were found to be the most abundant with both methods. For Dinophyceae, the most abundant representatives identified by microscopy were Gymnodinium spp., Prorocentrum minimum and Gonyaulax gracilis , while in the metabarcoding approach, most dinoflagellates were identified to the class level only. Given the different levels of accuracy of taxonomic determinations and possible biases in results connected to the chosen methodology, we advocate using an integrative taxonomic approach for the classification of planktonic protists based on the combination of microscopy and molecular methods.

The seawater microbiome is crucial in marine ecosystems because of its role in food chains and biogeochemical cycles; thus, we studied the composition of the pelagic marine microbiome collected in the upper 50 m on the opposite sides of Fram Strait: Spitsbergen and Greenland shelves. We found out that it differed significantly, with salinity being the main environmental variable responsible for these differences. The Spitsbergen shelf was dominated by Atlantic Waters, with a rather homogenous water column in terms of salinity and temperature down to 300 m; hence, the marine microbial community was also homogenous at all sampled depths (0, 25, 50 m). On the contrary, stations on the Greenland shelf were exposed to different water masses of both Arctic and Atlantic origin, which resulted in a more diverse microbial community there. Unexpectedly, for the very first time, we identified cyanobacterium Prochlorococcus marinus in Arctic waters (Spitsbergen shelf, 75–77° N). Till now, the distribution of this cyanobacteria in oceans has been described only between 40° N and 40° S. Considering the accelerated rate of climate warming in the Arctic, our results indicated that the seawater microbiome can be viewed as an amplifier of global change and that the Atlantification is in progress.

Knowledge of environmental preferences of the key planktonic species, such as Calanus copepods in the Arctic, is crucial to understand ecosystem function and its future under climate change. Here, we assessed the environmental conditions influencing the development stages of Atlantic Calanus finmarchicus and Arctic Calanus glacialis, and we quantified the extent to which their niches overlap by incorporating multiple environmental data. We based our analysis on a 3‐year seasonal collection of zooplankton by sediment traps, located on moorings in two contrasting Svalbard fjords: the Arctic Rijpfjorden and the Atlantic‐influenced Kongsfjorden. Despite large differences in water temperature between the fjords, local realized ecological niches of the sibling Calanus species overlapped almost perfectly. The exception was the earliest copepodites of C. glacialis in Rijpfjorden, which probably utilized the local ice algal bloom in spring. However, during periods with no sea ice, like in Kongsfjorden, the siblings of both Calanus species showed high synchronization in the population structure. Interestingly, differences in temperature preferences of C. finmarchicus and C. glacialis were much higher between the studied fjords than between the species. Our analysis confirmed the high plasticity of Calanus copepods and their abilities to adapt to highly variable environmental settings, not only on an interannual basis but also in a climate warming context, indicating some resilience in the Calanus community. We assessed environmental conditions influencing the development stages of Atlantic Calanus finmarchicus and Arctic Calanus glacialis, and we quantified the extent to which their niches overlap based on a three‐year seasonal collection of zooplankton by sediment traps, located on moorings in two contrasting Svalbard fjords: the Arctic Rijpfjorden and the Atlantic‐influenced Kongsfjorden. Despite large differences in water temperature between the fjords, local realized ecological niches of the sibling Calanus species overlapped almost perfectly. Our analysis confirmed the high plasticity of Calanus copepods and their abilities to adapt to highly variable environmental settings, not only on an interannual basis but also in a climate warming context, indicating some resilience in the Calanus community.

Benthic organisms typically possess a planktonic propagule stage in the form of larvae or spores, which enables them to spread over large distances before settlement, and promotes tight pelago-benthic coupling. However, factors driving dispersal and epibenthos recruitment in shallow hard-bottom Arctic communities are poorly known. We therefore conducted a year-round in situ colonization experiment in Isfjorden (Svalbard), and found out that variation in early-stage epibenthic assemblages was explained by the combination of: abiotic (45.9%) and biotic variables (23.9%), and their interactions (30.2%). The upward-facing experimental plates were dominated by coralline algae, and this is the first study showing that at high latitudes coralline algae Lithothamnion sp. settle in high numbers on available substrates during the polar night in winter. The downward-facing plates, which had much less exposure to light, contained more diverse organisms, with a predominance of polychaetas and bryozoans. However, in summer, the barnacle Semibalanus balanoides outcompeted all the other recruits, as a result of massive occurrence of meroplanktonic Cirripedia larvae, triggered by the phytoplankton bloom. In conclusion, the rate and success of epibenthic settlements were dependent mostly on light availability and temperature, suggesting that larval settlement will be impacted by global warming with some taxa benefitting, while others losing.

Oceanic fronts constitute boundaries between hydrologically distinct water masses and comprise one of the most productive regions of the world’s ocean. Fronts associated with density gradients (active fronts) profoundly structure planktonic communities in adjacent waters, but less is known about the impacts of density-compensated (passive) fronts. Two such fronts are found in the European Arctic, the Arctic Front (AF) and the Polar Front (PF), that both separate warmer and saltier, Atlantic water from the colder, but fresher Arctic water. As scrutinized research on the influence of passive fronts on zooplankton at large spatial and temporal scales had been lacking, we tackled the question of their role in maintaining distinct communities, employing globally unique, 12-year-long gelatinous zooplankton (GZ) and hydrological time series from the European Arctic. The GZ, owing to their fast reproductive cycles and passive dispersal, reflect particularly well the local environment. We therefore compared GZ communities between zones separated by the two fronts, disentangled their drivers, and analyzed community shifts occurring whenever front relocation occurred. We have identified fifteen GZ taxa, distributed among three distinct communities, specific for front-maintained zones, and selected the following taxa as indicators of each zone: W—west of the AF, within the Greenland Sea Gyre, Beroe spp.; C—central, in between the AF and the PF, Aglantha digitale ; and E—east of the PF, in the West Spitsbergen Shelf Mertensia ovum . Taxonomic composition of these communities, and their specific abundance, persisted throughout time. We also showed that relocation of either front between the sampling years was subsequently followed by the restructuring of the GZ community. Our results indicate that passive oceanic fronts maintain distinct GZ communities, with probable limited exchange across a front, and provide a new perspective for the Arctic ecosystem evolution under progressing Atlantification.

Meroplankton consists of the larvae of fish and benthic organisms, and plays a crucial role in linking pelagic and benthic ecosystems. However, research on zooplankton in the Baltic Sea has usually focused on holoplankton; thus, there are still significant gaps in knowledge about meroplankton and its seasonal variability. Consequently, as one of the first Baltic studies, we focused solely on the meroplankton community and its seasonal and spatial changes. Samples were collected monthly, year-round, between May 2021 and April 2022 from four stations located in the Gulf of Gdańsk, along a transect from the shallow Vistula River estuary to the Gdańsk Deep. The analysis of meroplankton resulted in the determination of 12 types of larvae belonging to 8 classes, and indicated that bivalves and polychaetes were the dominant components of the community. Meroplankton abundance and taxonomic composition showed high seasonality, with the highest abundances in summer, and spatial gradients in taxa diversity along the sampling transect. Additionally, statistical analysis revealed a key role of temperature in structuring the community. Taking the role of meroplankton into account, we propose more research in the Baltic Sea, possibly with the use of novel methods, and a greater focus on meroplankton in monitoring programs.

Recently observed rapid climate change in the Arctic region affects the ecology of all organisms; however, little attention has been paid to the impact on microbial communities and large-scale microbial processes in the Arctic. Therefore, we analyzed the microbiome collected from the Greenland and Spitsbergen shelves, on the opposite sides of the Fram Strait, which is the main gateway of Atlantic water to the Arctic Ocean. We found that salinity was the most important factor shaping the microbial communities, which were also stratified by depth. Interestingly, for the very first time, we identified the cyanobacteria Prochlorococcus marinus in polar waters (75–77° N), whose distribution in oceans had been previously described only in temperate, subtropical, and tropical waters, between 40° N and 40° S. We believe that our results revolutionize the knowledge about the distribution of P. marinus in the oceans, which northward shift could have been connected with the process of Atlantification of the Arctic, which involves intensified transport of Atlantic water masses through the Fram Strait towards the Arctic Ocean. Considering the accelerated rate of climate warming in the Arctic, our results indicated that the microbiome community can be viewed as an amplifier of global change and that the Atlantification process is in progress. The seawater microbiome is crucial in marine ecosystems because of its role in food chains and biogeochemical cycles; thus, we studied the composition of the pelagic marine microbiome collected in the upper 50 m on the opposite sides of Fram Strait: Spitsbergen and Greenland shelves. We found out that it differed significantly, with salinity being the main environmental variable responsible for these differences. The Spitsbergen shelf was dominated by Atlantic Waters, with a rather homogenous water column in terms of salinity and temperature down to 300 m; hence, the marine microbial community was also homogenous at all sampled depths (0, 25, 50 m). On the contrary, stations on the Greenland shelf were exposed to different water masses of both Arctic and Atlantic origin, which resulted in a more diverse microbial community there. Unexpectedly, for the very first time, we identified cyanobacterium Prochlorococcus marinus in Arctic waters (Spitsbergen shelf, 75–77° N). Till now, the distribution of this cyanobacteria in oceans has been described only between 40° N and 40° S. Considering the accelerated rate of climate warming in the Arctic, our results indicated that the seawater microbiome can be viewed as an amplifier of global change and that the Atlantification is in progress.

The distribution of two common intertidal amphipod species Gammarus oceanicus and Gammarus setosus was studied along the coast of Svalbard Archipelago. Genetic analysis showed geographical homogeneity of G. oceanicus with only one molecular operational taxonomic unit (MOTU) and much higher diversification of G. setosus (5 MOTUs) in the studied area. Only two MOTUs of G. setosus are widespread along the whole studied Svalbard coastline, whereas the remaining three MOTUs are present mainly along the northern and eastern parts of archipelago’s largest island, Spitsbergen. Distribution analysis indicates that the demographic and spatial expansion of G. oceanicus in the northern Atlantic has started already during the Last Glacial Maximum (LGM, ca. 18 ka), while G. setosus seems to be a long-persistent inhabitant of the Arctic, possibly even through the LGM, with slower distribution dynamics. Combining the results of our molecular study with previous field observations and the knowledge upon the direction of ocean currents around the Svalbard Archipelago, it can be assumed that G. oceanicus is a typical boreal Atlantic species that is still continuing its postglacial expansion northwards. In recent decades it colonized High Arctic due to the climate warming and has partly displaced G. setosus, that used to be the only common gammarid of the Svalbard intertidal zone.