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26 result(s) for "Whitfeld, Timothy"
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Widespread sampling biases in herbaria revealed from large-scale digitization
Nonrandom collecting practices may bias conclusions drawn from analyses of herbarium records. Recent efforts to fully digitize and mobilize regional floras online offer a timely opportunity to assess commonalities and differences in herbarium sampling biases. We determined spatial, temporal, trait, phylogenetic, and collector biases in c. 5 million herbarium records, representing three of the most complete digitized floras of the world: Australia (AU), South Africa (SA), and New England, USA (NE). We identified numerous shared and unique biases among these regions. Shared biases included specimens collected close to roads and herbaria; specimens collected more frequently during biological spring and summer; specimens of threatened species collected less frequently; and specimens of close relatives collected in similar numbers. Regional differences included overrepresentation of graminoids in SA and AU and of annuals in AU; and peak collection during the 1910s in NE, 1980s in SA, and 1990s in AU. Finally, in all regions, a disproportionately large percentage of specimens were collected by very few individuals. We hypothesize that these mega-collectors, with their associated preferences and idiosyncrasies, shaped patterns of collection bias via ‘founder effects’. Studies using herbarium collections should account for sampling biases, and future collecting efforts should avoid compounding these biases to the extent possible.
Predicting tropical insect herbivore abundance from host plant traits and phylogeny
Phylogenetic ecology has identified patterns of diversity in communities that may find explanation in trophic interactions, and yet there have been few attempts to directly relate such patterns among trophic levels. Density-dependent processes involving pests and pathogens, for example, have been invoked to account for plant community phylogenetic patterns, but relatively little is known about how plant relatedness might affect community structure at other trophic levels. We examined the degree to which the abundance of herbivores in a rain forest community is explained by the phylogeny and functional traits of host plants. We destructively sampled all stems ≥5 cm diameter in two 1-ha plots of New Guinea primary and secondary lowland forest to test predicted relationships between herbivore abundance and plant resources. We analyzed per-tree caterpillar and leaf miner abundance, total leaf biomass (kg), percentage of immature foliage, specific leaf area (cm 2 /g), leaf nitrogen content (percentage of dry mass), and presence of exudates in the context of a plant community phylogeny estimated from DNA barcodes. Apart from nitrogen content and exudates, neither plant resources nor herbivore abundance showed evidence of phylogenetic signal in our community sample. The plant traits we measured could account for only 30% and 16% of variation in caterpillar and leaf miner abundance, respectively, among individual trees. Leaf biomass was a stronger predictor of herbivore abundance than either resource quality (leaf nitrogen content) or palatability (percentage of immature foliage, specific leaf area). The primary importance of resource quantity was also observed at the plant species level in analyses of species means and phylogenetic generalized least-squares regression. Plant relatedness did not account for much variation in herbivore abundance, but significant effects of exudates and leaf nitrogen content on caterpillar abundance illustrate how conserved traits at one trophic level may influence community-wide patterns at another.
Species Richness, Forest Structure, and Functional Diversity During Succession in the New Guinea Lowlands
Much of the world's tropical forests have been affected by anthropogenic disturbance. These forests are important biodiversity reservoirs whose diversity, structure and function must be characterized across the successional sequence. We examined changes in structure and diversity along a successional gradient in the lowlands of New Guinea. To do this, we measured and identified all stems ≥5 cm diameter in 19 0.25 ha plots ranging in age from 3 to >50 yr since disturbance. We also measured plant functional traits related to establishment, performance, and competitive ability. In addition, we examined change in forest structure, composition, species diversity, and functional diversity through succession. By using rarefaction to estimate functional diversity, we compared changes in functional diversity while controlling for associated differences in stem and species density. Basal area and species density increased with stand age while stem density was highest in intermediate secondary forests. Species composition differed strongly between mature and secondary forests. As forests increased in basal area, community‐weighted mean wood density and foliar carbon increased, whereas specific leaf area and proportion of stems with exudate decreased. Foliar nitrogen peaked in medium‐aged forests. Functional diversity was highest in mature forests, even after accounting for differences in stem and species diversity. Our study represents one of the first attempts to document successional changes in New Guinea's lowland forest. We found robust evidence that as succession proceeds, communities occupy a greater range of functional trait space even after controlling for stem and species density. High functional diversity is important for ecological resiliency in the face of global change.
Invasive earthworms interact with abiotic conditions to influence the invasion of common buckthorn (Rhamnus cathartica)
Common buckthorn (Rhamnus cathartica L.) is one of the most abundant and ecologically harmful nonnative plants in forests of the Upper Midwest United States. At the same time, European earthworms are invading previously glaciated areas in this region, with largely anecdotal evidence suggesting they compound the negative effects of buckthorn and influence the invasibility of these forests. Germination and seedling establishment are important control points for colonization by any species, and manipulation of the conditions influencing these life history stages may provide insight into why invasive species are successful in some environments and not others. Using a greenhouse microcosm experiment, we examined the effects of important biotic and abiotic factors on the germination and seedling establishment of common buckthorn. We manipulated light levels, leaf litter depth and earthworm presence to investigate the independent and interactive effects of these treatments on buckthorn establishment. We found that light and leaf litter depth were significant predictors of buckthorn germination but that the presence of earthworms was the most important factor; earthworms interacted with light and leaf litter to increase the number and biomass of buckthorn across all treatments. Path analysis suggested both direct and moisture-mediated indirect mechanisms controlled these processes. The results suggest that the action of earthworms may provide a pathway through which buckthorn invades forests of the Upper Midwest United States. Hence, researchers and managers should consider co-invasion of plants and earthworms when investigating invasibility and creating preemptive or post-invasion management plans.
Resident plant diversity and introduced earthworms have contrasting effects on the success of invasive plants
Theoretical predictions and empirical studies suggest that resident species diversity is an important driver of community invasibility. Through trait-based processes, plants in communities with high resident species diversity occupy a wider range of ecological niches and are more productive than low diversity communities, potentially reducing the opportunities for invasion through niche preemption. In terrestrial plant communities, biotic ecosystem engineers such as earthworms can also affect invasibility by reducing leaf litter stocks and influencing soil conditions. In a greenhouse experiment, we simultaneously manipulated resident species diversity and earthworm presence to investigate independent and interactive effects of these two variables on the success of several invasive plants. Higher diversity of resident species was associated with lower biomass of invasives, with the effect mediated through resident species biomass. The presence of earthworms had a strong positive effect on the biomass of invasive species across all levels of resident species diversity and a weaker indirect negative effect via decreased soil moisture. Earthworms also weakened the positive correlation between resident species diversity and productivity. We did not observe any interactive effects of resident species biomass and earthworms on invasive species success. Partitioning the net biodiversity effect indicated that selection effects increased with resident species diversity whereas complementarity effects did not. Results suggest that managing for diverse forest communities may decrease the susceptibility of these communities to invasions. However, the presence of introduced earthworms in previously earthworm-free sites may undermine these efforts. Furthermore, future studies of plant community invasibility should account for the effects of introduced earthworms.
Regional forcing explains local species diversity and turnover on tropical islands
Aim: To determine the role of regional forcing on plot-level species diversity and composition, and to quantify the relative importance of biogeographical and climatic factors in explaining woody plant diversity and composition at the local-, island- and archipelago-scale. Location: Forty-one tropical islands of the Indo-Pacific region from Madagascar to Hawai‘i Island. Methods: We analysed the diversity and composition of tropical woody plant communities located across 113 plots, 41 islands and 19 archipelagos. We used generalized linear mixed-effects models and generalized dissimilarity models to determine the role of regional forcing at the island and archipelago scale and to assess the relative importance of biogeographical (area and isolation of islands or archipelagos, geographical distance between plots) and climatic factors in explaining differences in local diversity and composition (species turnover). Analyses were conducted at different geographical scales (local, island and archipelago) and taxonomic levels (species, genus and family). Results: Variation in local (plot-level) diversity (as species density, the number of species per 100 woody plants) was primarily explained by island and archipelago identity. Maximum species density was positively correlated with the area of an island (or archipelago) and negatively correlated with the isolation of an archipelago. Local climatic variability was also a significant predictor of species density, but less important than regional forcing. Climate variables explained < 20% of the variation in species turnover across all plots. The importance of geographical distance between plots relative to climate in driving species turnover decreased from the species to family level, and from the regional to island level. Main conclusions: Regional forcing was the key driver of local diversity and composition on islands. Island area and archipelago isolation are likely driving local diversity through their effects on the pool of island species. Geographical distance between plots is the main factor explaining species turnover, while at higher taxonomic levels, climatic factors and niche conservatism are the main drivers.
Retrospective Analysis of Heavy Metal Contamination in Rhode Island Based on Old and New Herbarium Specimens
Premise of the study: Herbarium specimens may provide a record of past environmental conditions, including heavy metal pollution. To explore this potential, we compared concentrations of copper, lead, and zinc in historical and new collections from four sites in Rhode Island, USA. Methods: We compared historical specimens (1846 to 1916) to congener specimens collected in 2015 at three former industrial sites in Providence, Rhode Island, and one nonindustrial site on Block Island. Leaf material was prepared by UltraWAVE SRC Microwave Digestion, and heavy metal concentrations were measured by inductively coupled plasma–atomic emission spectroscopy. Results: Heavy metal concentrations in the historical and new specimens were measurable for all elements tested, and levels of copper and zinc were comparable in the historical and 2015 collections. By contrast, the concentration of lead declined at all sites over time. Significant variability in heavy metal concentration was observed between taxa, reflecting their varied potential for elemental accumulation. Discussion: It seems clear that herbarium specimens can be used to evaluate past levels of pollution and assess local environmental changes. With careful sampling effort, these specimens can be a valuable part of environmental science research. Broadening the possible applications for herbarium collections in this way increases their relevance in an era of reduced funding for collections-based research.
Invasive plants in Minnesota are \joining the locals\: A trait-based analysis
Questions: Predicting which newly arrived species will establish and become invasive is a problem that has long vexed researchers. In a study of cold temperate oak forest stands, we examined two contrasting hypotheses regarding plant functional traits to explain the success of certain non-native species. Under the \"join the locals\" hypothesis, successful invaders are expected to share traits with resident species because they employ successful growth strategies under light-limited understorey conditions. Instead, under the \"try harder\" hypothesis, successful invaders are expected to have traits different from native species in order to take advantage of unused niche space. Location: Minnesota, USA. Methods: We examined these two theories using 109 native and 11 non-native plants in 68 oak forest stands. We focused on traits related to plant establishment and growth, including specific leaf area (SLA), leaf carbon-to-nitrogen ratio (C:N), wood density, plant maximum height, mycorrhizal type, seed mass and growth form. We compared traits of native and non-native species using ordinations in multidimensional trait space and compared community-weighted mean (CWM) trait values across sites. Results: We found few differences between trait spaces occupied by native and non-native species. Non-native species occupied smaller areas of trait space than natives, yet were within that of the native species, indicating similar growth strategies. We observed a higher proportion of non-native species in sites with higher native woody species CWM SLA and lower CWM C:N. Higher woody CWM SLA was observed in sites with higher soil pH, while lower CWM C:N was found in sites with higher light levels. Conclusions: Non-native plants in this system have functional traits similar to natives and are therefore \"joining the locals.\" However, non-native plants may possess traits toward the acquisitive end of the native plant trait range, as evidenced by higher non-native plant abundance in high-resource environments.
The colonial legacy of herbaria
Herbarium collections shape our understanding of Earth’s flora and are crucial for addressing global change issues. Their formation, however, is not free from sociopolitical issues of immediate relevance. Despite increasing efforts addressing issues of representation and colonialism in natural history collections, herbaria have received comparatively less attention. While it has been noted that the majority of plant specimens are housed in the Global North, the extent and magnitude of this disparity have not been quantified. Here we examine the colonial legacy of botanical collections, analysing 85,621,930 specimen records and assessing survey responses from 92 herbarium collections across 39 countries. We find an inverse relationship between where plant diversity exists in nature and where it is housed in herbaria. Such disparities persist across physical and digital realms despite overt colonialism ending over half a century ago. We emphasize the need for acknowledging the colonial history of herbarium collections and implementing a more equitable global paradigm for their collection, curation and use. Data suggest an inverse relationship exists between where plant diversity occurs in nature and where it is housed. This disparity persists across physical and digital botanical collections despite overt colonialism ending over half a century ago.
Tropical forest dynamics in unstable terrain: a case study from New Guinea
Long-term forest dynamics plots in the tropics tend to be situated on stable terrain. This study investigated forest dynamics on the north coast of New Guinea where active subduction zones are uplifting lowland basins and exposing relatively young sediments to rapid weathering. We examined forest dynamics in relation to disturbance history, topography and soil nutrients based on partial re-census of the 50-ha Wanang Forest Dynamics Plot in Papua New Guinea. The plot is relatively high in cations and phosphorus but low in nitrogen. Soil nutrients and topography accounted for 29% of variation in species composition but only 4% of variation in basal area. There were few areas of high biomass and most of the forest was comprised of small-diameter stems. Approximately 18% of the forest was less than 30 y old and the annual tree mortality rate of nearly 4% was higher than in other tropical forests in South-East Asia and the neotropics. These results support the reputation of New Guinea's forests as highly dynamic, with frequent natural disturbance. Empirical documentation of this hypothesis expands our understanding of tropical forest dynamics and suggests that geomorphology might be incorporated in models of global carbon storage especially in regions of unstable terrain.