Explore the vast range of titles available.

Cassava (Manihot esculenta) feeds c. 800 million people world-wide. Although this crop displays high productivity under drought and poor soil conditions, it is susceptible to disease, postharvest deterioration and the roots contain low nutritional content. Here, we provide molecular identities for 11 cassava tissue/organ types through RNA-sequencing and develop an open access, web-based interface for further interrogation of the data. Through this dataset, we consider the physiology of cassava. Specifically, we focus on identification of the transcriptional signatures that define the massive, underground storage roots used as a food source and the favored target tissue for transgene integration and genome editing, friable embryogenic callus (FEC). Further, we identify promoters able to drive strong expression in multiple tissue/organs. The information gained from this study is of value for both conventional and biotechnological improvement programs.

This paper concerns an information extraction process for building a dynamic legislation network from legal documents. Unlike supervised learning approaches which require additional calculations, the idea here is to apply information extraction methodologies by identifying distinct expressions in legal text in order to extract network information. The study highlights the importance of data accuracy in network analysis and improves approximate string matching techniques to produce reliable network data-sets with more than 98% precision and recall. The applications and the complexity of the created dynamic legislation network are also discussed and challenged.

Cotton bacterial blight (CBB), an important disease of (Gossypium hirsutum) in the early 20th century, had been controlled by resistant germplasm for over half a century. Recently, CBB re-emerged as an agronomic problem in the United States. Here, we report analysis of cotton variety planting statistics that indicate a steady increase in the percentage of susceptible cotton varieties grown each year since 2009. Phylogenetic analysis revealed that strains from the current outbreak cluster with race 18 Xanthomonas citri pv. malvacearum (Xcm) strains. Illumina based draft genomes were generated for thirteen Xcm isolates and analyzed along with 4 previously published Xcm genomes. These genomes encode 24 conserved and nine variable type three effectors. Strains in the race 18 clade contain 3 to 5 more effectors than other Xcm strains. SMRT sequencing of two geographically and temporally diverse strains of Xcm yielded circular chromosomes and accompanying plasmids. These genomes encode eight and thirteen distinct transcription activator-like effector genes. RNA-sequencing revealed 52 genes induced within two cotton cultivars by both tested Xcm strains. This gene list includes a homeologous pair of genes, with homology to the known susceptibility gene, MLO. In contrast, the two strains of Xcm induce different clade III SWEET sugar transporters. Subsequent genome wide analysis revealed patterns in the overall expression of homeologous gene pairs in cotton after inoculation by Xcm. These data reveal important insights into the Xcm-G. hirsutum disease complex and strategies for future development of resistant cultivars.

Asthma affects all portions of the airways. Small airways, however, comprise a substantial component of the conducting lung air flow. In asthma, inflammatory processes can affect the whole respiratory tract, from central to peripheral/small airways. The emphasis in adult and pediatric respiratory disease clinics is to focus on large airway obstruction and reversibility. This information, although valuable, underemphasizes a large portion of the conduction airway of asthmatics. Standard descriptions of asthma management focus on a multiple medication approaches. We particularly focused on the management of asthma in the international guidelines for the Global Initiative for Asthma (GINA). Overall, however, minimal attention is placed on the small airway pool in asthma medical management. We took the opportunity to thoroughly review and present specific data from the adult asthma literature which supported the concept that small airway abnormalities may play a role in the pathogenesis and clinical expression of asthma. Based on the conclusions of the adult asthma literature, we here present a thorough review of the literature as it relates to small airway disease in children with asthma. We used, collectively, individual data sources of data to expand the information available from standard diagnostic techniques, especially spirometry, in the evaluation of small airway disease. As the pharmacological approaches to moderate to severe asthma are advancing rapidly into the realm of biologics, we sought to present potential pharmacological options for small airway dysfunction in pediatrics prior to biological modifier intervention.

Background The inner retinal complex is a well-defined layer in spectral-domain OCT scans of the retina. The central edge of this layer at the fovea provides anatomical landmarks that can be observed in serial OCT scans of developing full-thickness macular holes (FTMH). Measurement of the movement of these points may clarify the mechanism of FTMH formation. Method This is a retrospective study of primary FTMH that had a sequence of two OCT scans showing progression of the hole. Measurements were made of the dimensions of the hole, including measurements using the central edge of the inner retinal complex (CEIRC) as markers. The inner retinal separation (distance between the CEIRC across the centre of the fovea) and the Height-IRS (average height of CEIRC above the retinal pigment epithelium) were measured. Results Eighteen cases were identified in 17 patients. The average increase in the base diameter (368 microns) and the average increase in minimum linear dimension (187 microns) were much larger than the average increase in the inner retinal separation (73 microns). The average increase in Height-IRS was 103 microns. Conclusion The tangential separation of the outer retina to produce the macular hole is much larger than the tangential separation of the inner retinal layers. A model based on the histology of the Muller cells at the fovea is proposed to explain the findings of this study.

Lubrication modeling has long been dominated by the well-established Patir and Cheng flow factors method. The flow factors approach allows for accurate estimates of macroscale parameters (such as friction) in a reasonable amount of time. These methods are stochastic representations of microscale interactions and are not able to predict local scale (pressure, film thickness) phenomena with a suitable degree of accuracy. This contrasts with a deterministic approach, where a numerical grid must be applied that fully defines the microscale surface topography across the contact. The mesh resolution required leads to prohibitively long execution times and lacks scalability to engineering systems, but provides accurate predictions of local scale phenomena. In this paper, heterogeneous multiscale methods (HMM) are expanded to model varying and are, therefore, more representative of surface topography within lubricated contacts. This representative topography is derived from measured data, thereby allowing the accuracy of deterministic methods to be achieved with the speed of a flow factor method. This framework is then applied to compare key performance characteristics (pressure, film thickness, etc.) when idealized, Gaussian, and measured surface topography are modeled. The variations in microscale geometry are defined by measurements from across two tilted-pad bearings, demonstrating the ability of the expanded HMM framework to model representative surface topography. A comparison with a deterministic method is included as validation, and outputs of the HMM are discussed in the context of the lubrication across multiple length scales.

An effective way to enhance the heat transfer in mini and micro electronic devices is to use different shapes of micro-channels containing vortex generators (VGs). This attracts researchers due to the reduced volume of the electronic micro-chips and increase in the heat generated from the devices. Another way to enhance the heat transfer is using nanofluids, which are considered to have great potential for heat transfer enhancement and are highly suited to application in practical heat transfer processes. Recently, several important studies have been carried out to understand and explain the causes of the enhancement or control of heat transfer using nanofluids. The main aim upon which the present work is based is to give a comprehensive review on the research progress on the heat transfer and fluid flow characteristics of nanofluids for both single- and two- phase models in different types of micro-channels. Both experimental and numerical studies have been reviewed for traditional and nanofluids in different types and shapes of micro-channels with vortex generators. It was found that the optimization of heat transfer enhancement should consider the pumping power reduction when evaluating the improvement of heat transfer.

Tribochemistry plays a very important role in the behaviour of systems in tribologically loaded contacts under boundary lubrication conditions. Previous works have mainly reported contact mechanics simulations for capturing the boundary lubrication regime, but the real mechanism in which tribofilms reduce wear is still unclear. In this paper, the wear prediction capabilities of a recently published mechanochemical simulation approach (Ghanbarzadeh et al. in Tribol Int, 2014 ) are tested. The wear model, which involves a time- and spatially dependent coefficient of wear, was tested for two additive concentrations and three temperatures at different times, and the predictions are validated against experimental results. The experiments were conducted using a mini-traction machine in a sliding/rolling condition, and the spacer layer interferometry method was used to measure the tribofilm thickness. Wear measurements have been taken using a white-light interferometry. Good agreement is seen between simulation and experiment in terms of tribofilm thickness and wear depth predictions.

Experimental results have confirmed that parallel rough surfaces can be separated by a full fluid film. However, such a lift-off effect is not expected by the traditional Reynolds theory. This paper proposes a deterministic mixed lubrication model to understand the mechanism of the lift-off effect. The proposed model considered the interaction between asperities and the micro-elastohydrodynamic lubrication (micro-EHL) at asperities within parallel rough surfaces for the first time. The proposed model is verified by predicting the measured Stribeck curve taken from literature and experiments conducted in this work. The simulation results highlight that the micro-EHL effect at the asperity scale is critical in building load-carrying capacity between parallel rough surfaces. Finally, the drawbacks of the proposed model are addressed and the directions of future research are pointed out.

The most commonly used publication metrics for individual researchers are the total number of publications, the total number of citations, and Hirsch’s -index. Each of these is cumulative, and hence increases throughout a researcher’s career, making it less suitable for evaluation of junior researchers or assessing recent impact. Most other author-level measures in the literature share this cumulative property. By contrast, we aim to study noncumulative measures that answer the question “In terms of citation impact, what have you done lately?” We single out six measures from the rather sparse literature, including Hirsch’s -index, a time-scaled version of the -index. We introduce new measures based on the idea of “citation acceleration.” After presenting several axioms for noncumulative measures, we conclude that one of our new measures has much better theoretical justification. We present a small-scale study of its performance on real data and conclude that it shows substantial promise for future use.