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13
result(s) for
"Witkowski, Taylor"
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The Development of a Brief but Comprehensive Therapeutic Assessment Protocol for the Screening and Support of Youth in the Community to Address the Youth Mental Health Crisis
by
Carson, Nicholas
,
Richards, Eleanor Castine
,
Cook, Benjamin Le
in
access to treatment
,
African Americans
,
Algorithms
2024
Objective: The objective of this study was to explore the acceptability and feasibility of a therapeutic assessment protocol for the Screening and Support of Youth (SASY). SASY provides brief but comprehensive community-based screening and support for diverse youth in the community. Methods: SASY screening evaluates symptoms, functioning and clinical risk. The Kiddie Computerized Adaptive Test was used to evaluate seven different diagnoses and symptom severity. The Weiss Functional Impairment Rating Scale-Self was used to measure functional impairment. Measures were scored according to nationally developed norms. An algorithm was developed to aggregate symptom and function ratings into an overall score for clinical risk. The results are discussed with participants in a motivational interview designed to promote insight, followed by the opportunity for the participant to engage in an online intervention. Protocol changes necessitated by social distancing during the pandemic led to innovative methods including the use of a QR code for recruitment, integration of both online and offline participation, and expansion from in-person recruitment within the schools to virtual engagement with youth throughout the community. The final sample included disproportionately more Black or African American and Hispanic youth as compared to school and community statistics, suggesting that optimization of online and offline methods in research may facilitate the recruitment of diverse populations. Qualitative interviews indicated that the screening and feedback raised youth awareness of their wellbeing and/or distress, its impact on their functioning, and engagement with options for improved wellbeing. Conclusions: The emergence of innovative methods optimizing the advantages of both online and offline methods, developed as a necessity during the pandemic, proved advantageous to the feasibility and acceptability of community-based recruitment of at-risk, minoritized youth.
Journal Article
Novel phenotypic assays for the detection of artemisinin-resistant Plasmodium falciparum malaria in Cambodia: in-vitro and ex-vivo drug-response studies
by
Sopha, Chantha
,
Sam, Baramey
,
Mao, Sivanna
in
Antibiotics. Antiinfectious agents. Antiparasitic agents
,
Antimalarials - pharmacology
,
Antiparasitic agents
2013
Artemisinin resistance in Plasmodium falciparum lengthens parasite clearance half-life during artemisinin monotherapy or artemisinin-based combination therapy. Absence of in-vitro and ex-vivo correlates of artemisinin resistance hinders study of this phenotype. We aimed to assess whether an in-vitro ring-stage survival assay (RSA) can identify culture-adapted P falciparum isolates from patients with slow-clearing or fast-clearing infections, to investigate the stage-dependent susceptibility of parasites to dihydroartemisinin in the in-vitro RSA, and to assess whether an ex-vivo RSA can identify artemisinin-resistant P falciparum infections.
We culture-adapted parasites from patients with long and short parasite clearance half-lives from a study done in Pursat, Cambodia, in 2010 (registered with ClinicalTrials.gov, number NCT00341003) and used novel in-vitro survival assays to explore the stage-dependent susceptibility of slow-clearing and fast-clearing parasites to dihydroartemisinin. In 2012, we implemented the RSA in prospective parasite clearance studies in Pursat, Preah Vihear, and Ratanakiri, Cambodia (NCT01736319), to measure the ex-vivo responses of parasites from patients with malaria. Continuous variables were compared with the Mann-Whitney U test. Correlations were analysed with the Spearman correlation test.
In-vitro survival rates of culture-adapted parasites from 13 slow-clearing and 13 fast-clearing infections differed significantly when assays were done on 0–3 h ring-stage parasites (10·88% vs 0·23%; p=0·007). Ex-vivo survival rates significantly correlated with in-vivo parasite clearance half-lives (n=30, r=0·74, 95% CI 0·50–0·87; p<0·0001).
The in-vitro RSA of 0–3 h ring-stage parasites provides a platform for the molecular characterisation of artemisinin resistance. The ex-vivo RSA can be easily implemented where surveillance for artemisinin resistance is needed.
Institut Pasteur du Cambodge and the Intramural Research Program, NIAID, NIH.
Journal Article
Mechanisms of Resistance to Noncovalent Bruton’s Tyrosine Kinase Inhibitors
by
Wang, Eric
,
Bourcier, Jessie
,
Witkowski, Matthew T
in
Adenine - analogs & derivatives
,
Adenine - pharmacology
,
Agammaglobulinaemia Tyrosine Kinase - antagonists & inhibitors
2022
In nine patients with chronic lymphocytic leukemia that responded to the noncovalent BTK inhibitor pirtobrutinib and then developed resistance, analysis revealed a number of new mutations in the BTK kinase domain and occasional mutations in downstream PLCγ2. Despite the inactivity of BTK, alternative pathways of B-cell–receptor signaling were evident.
Journal Article
Using serological diagnostics to characterize remaining high-incidence pockets of malaria in forest-fringe Cambodia
2024
Background
Over the last decades, the number of malaria cases has drastically reduced in Cambodia. As the overall prevalence of malaria in Cambodia declines, residual malaria transmission becomes increasingly fragmented over smaller remote regions. The aim of this study was to get an insight into the burden and epidemiological parameters of
Plasmodium
infections on the forest-fringe of Cambodia.
Methods
950 participants were recruited in the province of Mondulkiri in Cambodia and followed up from 2018 to 2020. Whole-blood samples were processed for
Plasmodium
spp
.
identification by PCR as well as for a serological immunoassay. A risk factor analysis was conducted for
Plasmodium vivax
PCR-detected infections throughout the study, and for
P. vivax
seropositivity at baseline. To evaluate the predictive effect of seropositivity at baseline on subsequent PCR-positivity, an analysis of
P. vivax
infection-free survival time stratified by serological status at baseline was performed.
Results
Living inside the forest significantly increased the odds of
P. vivax
PCR-positivity by a factor of 18.3 (95% C.I. 7.7–43.5). Being a male adult was also a significant predictor of PCR-positivity. Similar risk profiles were identified for
P. vivax
seropositivity. The survival analysis showed that serological status at baseline significantly correlated with subsequent infection. Serology is most informative outside of the forest, where 94.0% (95% C.I. 90.7–97.4%) of seronegative individuals survived infection-free, compared to 32.4% (95% C.I.: 22.6–46.6%) of seropositive individuals.
Conclusion
This study justifies the need for serological diagnostic assays to target interventions in this region, particularly in demographic groups where a lot of risk heterogeneity persists, such as outside of the forest.
Journal Article
Learning to isolate muons
by
Faucett, Taylor
,
Collado, Julian
,
Whiteson, Daniel
in
Classical and Quantum Gravitation
,
Classification
,
Cones
2021
A
bstract
Distinguishing between prompt muons produced in heavy boson decay and muons produced in association with heavy-flavor jet production is an important task in analysis of collider physics data. We explore whether there is information available in calorimeter deposits that is not captured by the standard approach of isolation cones. We find that convolutional networks and particle-flow networks accessing the calorimeter cells surpass the performance of isolation cones, suggesting that the radial energy distribution and the angular structure of the calorimeter deposits surrounding the muon contain unused discrimination power. We assemble a small set of high-level observables which summarize the calorimeter information and close the performance gap with networks which analyze the calorimeter cells directly. These observables are theoretically well-defined and can be studied with collider data.
Journal Article
G6PD deficiency in Plasmodium falciparum and Plasmodium vivax malaria-infected Cambodian patients
2013
Background
Glucose-6-phosphate-dehydrogenase deficiency (G6PDd) rates are unknown in malaria-infected Cambodian patients. These data are key to a rational drug policy for malaria elimination of
Plasmodium falciparum
and
Plasmodium vivax
.
Methods
From September 2010–2012, a two-year survey of G6PDd and haemoglobinopathies assessed by quantitative enzyme activity assay and haemoglobin electrophoresis, respectively, was conducted in malaria-infected patients presenting to 19 health centres throughout Cambodia.
Results
A total of 2,408 confirmed malaria patients of mean age 26.7 (range 2–81) years were recruited from mostly western Cambodia (n = 1,732, 71.9%); males outnumbered females by 3.9:1.
Plasmodium falciparum
was present in 1,443 (59.9%) and
P. vivax
in 965 (40.1%) patients. Mean G6PD activity was 11.6 (CI 95%: 11.4-11.8) U/g Hb, G6PDd was present in 13.9% of all patients (335/2,408) and severe G6PDd (including WHO Class I and II variants) was more common in western (158/1,732, 9.1%)
versus
eastern (21/414, 5.1%) Cambodia (
P
= 0.01). Of 997/2,408 (41.4%) had a haemoglobinopathy. Mean haemoglobin concentrations were inversely related to age: 8.1 g/dL < five years, 8.7 g/dL five to 14 years, and 10.4 g/dL >15 years (P <0.001).
Conclusions
G6PDd prevalence, anaemia and haemoglobinopathies were common in malaria-infected patients. The deployment of primaquine in Cambodia should be preceded by primaquine safety studies paralleled with evaluations of easy to use tests to detect G6PDd.
Journal Article
Beyond names: developing a names database and other applications for diatoms
by
Coste, M
,
24877697 - Balasubramanian, Karthick
,
11331798 - Taylor, Jonathan Charles
in
Aquatic life
,
Catalogues
,
Diatoms
2017
Names are an important reference for all aspects of Biology, Paleontology, Medicine and many other applications. Nomenclatural databases have been developed to document and identify names that have already been established, as well as when, where and by whom they have been proposed and published. There has been a long history of catalogues of names representing the great diversity of diatoms. Some of these catalogues were limited in coverage and impact, others have been more complete, widely distributed and widely cited. The catalogue of VanLandingham, as well as the Index Nominum Algarum and the New Species File at ANSP were collaboratively integrated into a single database and made available on line and presented by Fourtanier and Kociolek as the Catalogue of Diatom Names. In its first iteration, the Catalogue of Diatom Names contained 64,000 names derived from over 12,000 references. It debuted in – 103 – 2005, and in 2010 it was accessed by over 30,000 unique IP addresses and over 5,000,000 downloads. The database grew until 2011, but ceased to be updated since. A new collaboration between an international group of editors has been formed, and working with VLIZ to produce a new, reliable resource for diatom names called DiatomBase (http://www.DiatomBase.org). This project takes the Catalogue of Diatom Names and integrates with the VLIZ Aphia database structure with names from Algaebase, to create a resource for diatom nomenclature and information. DiatomBase will also support a number of nomenclatural and other informatics efforts, as well as bring together images of types and other curated images, as well as linking to other resources. The group of editors, 20 people from 14 countries, has enhanced the speed in which DiatomBase has been developed, and will be critical for the long-term sustainability of the project. DiatomBase will debut at the International Phycological Congress
Conference Proceeding
Beyong names: developing a names database and other applications for diatoms
2017
Catalogue of diatom names resurrected: diatombase will be the new authority resource for diatom names and more.
Journal Article
Learning to Isolate Muons
2021
Distinguishing between prompt muons produced in heavy boson decay and muons produced in association with heavy-flavor jet production is an important task in analysis of collider physics data. We explore whether there is information available in calorimeter deposits that is not captured by the standard approach of isolation cones. We find that convolutional networks and particle-flow networks accessing the calorimeter cells surpass the performance of isolation cones, suggesting that the radial energy distribution and the angular structure of the calorimeter deposits surrounding the muon contain unused discrimination power. We assemble a small set of high-level observables which summarize the calorimeter information and close the performance gap with networks which analyze the calorimeter cells directly. These observables are theoretically well-defined and can be studied with collider data.