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result(s) for
"Woźniak, Anna"
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Nanomolar Nitric Oxide Concentrations in Living Cells Measured by Means of Fluorescence Correlation Spectroscopy
by
Gapiński, Jacek
,
Woźniak, Anna
,
Litowczenko, Jagoda
in
Cell Survival
,
fluorescence correlation spectroscopy
,
Fluorescent Dyes - analysis
2022
Measurement of the nitric oxide (NO) concentration in living cells in the physiological nanomolar range is crucial in understanding NO biochemical functions, as well as in characterizing the efficiency and kinetics of NO delivery by NO-releasing drugs. Here, we show that fluorescence correlation spectroscopy (FCS) is perfectly suited for these purposes, due to its sensitivity, selectivity, and spatial resolution. Using the fluorescent indicators, diaminofluoresceins (DAFs), and FCS, we measured the NO concentrations in NO-producing living human primary endothelial cells, as well as NO delivery kinetics, by an external NO donor to the immortal human epithelial living cells. Due to the high spatial resolution of FCS, the NO concentration in different parts of the cells were also measured. The detection of nitric oxide by means of diaminofluoresceins is much more efficient and faster in living cells than in PBS solutions, even though the conversion to the fluorescent form is a multi-step reaction.
Journal Article
Influence of casein on the degradation process of polylactide-casein coatings for resorbable alloys
by
Staszuk, Marcin
,
Woźniak, Anna
,
Cesarz-Andraczke, Katarzyna
in
631/61/54/990
,
639/301/1023
,
Adhesion
2024
This study used the dip-coating method to develop a new biocompatible coating composed of polylactide (PLA) and casein for ZnMg1.2 wt% alloy implants. It evaluated its impact on the alloy's degradation in a simulated body fluid. After 168 h of immersion in Ringer's solution, surface morphology analysis showed that the PLA-casein coatings demonstrated uniform degradation, with the corrosion current density measured at 48 µA/cm
2
. Contact angle measurements indicated that the average contact angles for the PLA-casein-coated samples were below 80°, signifying a hydrophilic nature that promotes cell adhesion. Fourier-transform infrared spectroscopy (FTIR) revealed no presence of lactic acid on PLA-casein coatings after immersion, in contrast to pure PLA coatings. Pull-off adhesion tests showed tensile strength values of 7.6 MPa for pure PLA coatings and 5 MPa for PLA-casein coatings. Electrochemical tests further supported the favorable corrosion resistance of the PLA-casein coatings, highlighting their potential to reduce tissue inflammation and improve the biocompatibility of ZnMg1.2 wt% alloy implants.
Journal Article
Exploring the possibility of predicting human head hair greying from DNA using whole-exome and targeted NGS data
by
Boroń, Michał
,
Kukla-Bartoszek, Magdalena
,
Jarosz, Agata
in
Age determination
,
Aging
,
Aging (Biology)
2020
Background
Greying of the hair is an obvious sign of human aging. In addition to age, sex- and ancestry-specific patterns of hair greying are also observed and the progression of greying may be affected by environmental factors. However, little is known about the genetic control of this process. This study aimed to assess the potential of genetic data to predict hair greying in a population of nearly 1000 individuals from Poland.
Results
The study involved whole-exome sequencing followed by targeted analysis of 378 exome-wide and literature-based selected SNPs. For the selection of predictors, the minimum redundancy maximum relevance (mRMRe) method was used, and then two prediction models were developed. The models included age, sex and 13 unique SNPs. Two SNPs of the highest mRMRe score included whole-exome identified
KIF1A
rs59733750 and previously linked with hair loss
FGF5
rs7680591. The model for greying vs. no greying prediction achieved accuracy of cross-validated AUC = 0.873. In the 3-grade classification cross-validated AUC equalled 0.864 for no greying, 0.791 for mild greying and 0.875 for severe greying. Although these values present fairly accurate prediction, most of the prediction information was brought by age alone. Genetic variants explained < 10% of hair greying variation and the impact of particular SNPs on prediction accuracy was found to be small.
Conclusions
The rate of changes in human progressive traits shows inter-individual variation, therefore they are perceived as biomarkers of the biological age of the organism. The knowledge on the mechanisms underlying phenotypic aging can be of special interest to the medicine, cosmetics industry and forensics. Our study improves the knowledge on the genetics underlying hair greying processes, presents prototype models for prediction and proves hair greying being genetically a very complex trait. Finally, we propose a four-step approach based on genetic and epigenetic data analysis allowing for i) sex determination; ii) genetic ancestry inference; iii) greying-associated SNPs assignment and iv) epigenetic age estimation, all needed for a final prediction of greying.
Journal Article
Quantum anomaly detection in the latent space of proton collision events at the LHC
by
Woźniak, Kinga Anna
,
Grossi, Michele
,
Belis, Vasilis
in
639/766/419/1131
,
639/766/419/1132
,
639/766/483
2024
The ongoing quest to discover new phenomena at the LHC necessitates the continuous development of algorithms and technologies. Established approaches like machine learning, along with emerging technologies such as quantum computing show promise in the enhancement of experimental capabilities. In this work, we propose a strategy for anomaly detection tasks at the LHC based on unsupervised quantum machine learning, and demonstrate its effectiveness in identifying new phenomena. The designed quantum models-an unsupervised kernel machine and two clustering algorithms-are trained to detect new-physics events using a latent representation of LHC data, generated by an autoencoder designed to accommodate current quantum hardware limitations on problem size. For kernel-based anomaly detection, we implement an instance of the model on a quantum computer, and we identify a regime where it significantly outperforms its classical counterparts. We show that the observed performance enhancement is related to the quantum resources utilised by the model.
The ongoing quest in particle physics to discover fundamentally new phenomena necessitates the continuous development of algorithms and technologies. The authors propose a methodology based on quantum machine learning that can identify new phenomena in proton collision experiments, showing that it can outperform its classical counterparts when sufficient quantum computing resources are utilized.
Journal Article
An analysis of the population of Cryptococcus neoformans strains isolated from animals in Poland, in the years 2015–2019
by
Florek, Magdalena
,
Korzeniowska-Kowal, Agnieszka
,
Król, Jarosław
in
631/326
,
631/337
,
692/699
2021
Fungi belonging to the
Cryptococcus neoformans/C. gattii
species complex (CNGSC) are pathogens causing severe infections in humans and animals, that for humans may result in a mortality rate ranging up to 70%. The CNGSC is divided into eight major molecular types, that may differ in their virulence and susceptibility. In order to fully understand the epidemiology of cryptococcosis, it is important to study the world distribution and population structure of these pathogens. The present study is the first presenting a population of strains isolated in Poland and one of the few using a multi-species animal group as a source of the specimen. The pathogen was present in 2.375% of the tested animals. The
URA
5-RFLP and MALDI-TOF MS analyses have revealed that the population consisted exclusively of
C. neoformans
strains, with a predominance of major molecular type VNIV (
C. neoformans
var.
neoformans
). The MALDI-TOF MS was used to perform the CNGSC strains identification on both the species and sub-species level. Despite the fact that the animals providing the specimens were not treated with 5-fluorocytosine, around 10% of the tested population presented MIC values exceeding 64 mg/L, indicating the existence of the 5-fluorocytosine-resistant strains in the environment.
Journal Article
Boosting Broiler Health and Productivity: The Impact of in ovo Probiotics and Early Posthatch Feeding with Bacillus subtilis, Lactobacillus fermentum, and Enterococcus faecium
by
Madej, Jan P.
,
Woźniak-Biel, Anna
,
Bobrek, Kamila
in
Agricultural production
,
Antibiotics
,
Bacillus subtilis
2025
In ovo administration of probiotics has the potential to enable the early colonization of the gut microbiota, providing health benefits from the onset of life. This study aimed to assess the impact of in ovo probiotic inoculation combined with early posthatch feeding on intestinal development and colonization by Campylobacter spp., immune system development, and the final production performance of chickens. On the 18th day of incubation, Bacillus subtilis, Lactobacillus fermentum, Enterococcus faecium, or physiological saline (control) was administered to Ross 308 eggs in ovo, and chicks had immediate access to feed and water upon hatching. On the 7th, 21st, and 35th days after hatching, samples of tissues were taken for histomorphometric analysis. Campylobacter strains in the cecal content were quantitatively evaluated. Probiotic administration had a beneficial effect on the development of the small intestine and increased the number of B cells in the spleen and the number of B and CD4+ cells in the cecal tonsils. The in ovo administration of probiotics did not reduce Campylobacter jejuni colonization and even led to increased bacterial loads in some groups by day 35. However, when combined with early feeding, in ovo probiotic administration had a positive impact on the development of the small intestine and peripheral immune organs.
Journal Article
LHC physics dataset for unsupervised New Physics detection at 40 MHz
by
Aarrestad, Thea
,
Puljak, Ema
,
Govorkova, Ekaterina
in
639/766/419/1131
,
706/648/697
,
Computer applications
2022
In the particle detectors at the Large Hadron Collider, hundreds of millions of proton-proton collisions are produced every second. If one could store the whole data stream produced in these collisions, tens of terabytes of data would be written to disk every second. The general-purpose experiments ATLAS and CMS reduce this overwhelming data volume to a sustainable level, by deciding in real-time whether each collision event should be kept for further analysis or be discarded. We introduce a dataset of proton collision events that emulates a typical data stream collected by such a real-time processing system, pre-filtered by requiring the presence of at least one electron or muon. This dataset could be used to develop novel event selection strategies and assess their sensitivity to new phenomena. In particular, we intend to stimulate a community-based effort towards the design of novel algorithms for performing unsupervised new physics detection, customized to fit the bandwidth, latency and computational resource constraints of the real-time event selection system of a typical particle detector.
Measurement(s)
Simulations of LHC collisions in real-time processing data format
Technology Type(s)
PYTHIA, DELPHES, private python code
Factor Type(s)
phi • eta • pT
Journal Article
Study protocol: Accommodative effects on the musculoskeletal system
by
Matysik-Woźniak, Anna
,
Zieliński, Grzegorz
,
Rejdak, Robert
in
Accommodation
,
Analysis
,
Biology and Life Sciences
2023
Accommodation is a phenomenon of the eyeball, which consists of adapting to view objects at different distances. The main aim of this study is to evaluate the effect of accommodations on the musculoskeletal system in myopic and emmetropic subjects. To date, the effect of accommodative paralysis on the musculoskeletal system has not been studied. The research hypothesis based on the current research reports is that accommodation affects the musculoskeletal system in myopic and emmetropic subjects. A smaller aim of the study is to evaluate the effect of unilateral accommodative palsy on the musculoskeletal system in myopic and emmetropic subjects. According to the authors of the previous reports, unilateral accommodative palsy will affect increased musculoskeletal asymmetry in myopic and emmetropic subjects. The surface electromyography (sEMG) of the musculoskeletal system will be performed by using the Noraxon Ultium DTS 8-K MR 3 myo Muscle Master Edition. Cycloftyal (10 mg/ml, eye drops, solution) will be used to paralyze accommodation. After the paralysis of unilateral accommodation, the test will be repeated. Both-sided accommodation will be paralyzed next, and the test will be repeated. The study may provide insight into the effects of accommodation on the musculoskeletal system, and it may also help in understanding the connections between these systems.
Journal Article
Isolation and characterization of multidrug resistant Gallibacterium anatis biovar haemolytica strains from Polish geese and hens
by
Krzyżewska-Dudek, Eva
,
Bojesen, Anders Miki
,
Karwańska, Magdalena
in
Analysis
,
anti-infective agents
,
antibiotic resistance
2023
Gallibacterium anatis
biovar
haemolytica
is a bacterium that is frequently associated with infections of the reproductive tract and respiratory system in poultry. To assess the current prevalence and resistance profile of these bacteria in Poland, we collected and investigated 63 strains of
Gallibacterium
from diseased domestic poultry flocks including geese, laying hens, breeding hens and an ornamental hen. Detailed characterization of the isolates included the analysis of phenotypic antimicrobial resistance profiles and biofilm formation ability. Furthermore, the genetic background of 40 selected isolates regarding the presence of virulence and antimicrobial resistance genes and mobile genetic elements was determined. All investigated isolates were multidrug resistant, most prominently to β-lactams, fluoroquinolones, sulfonamides and macrolides. A total of 48 different resistance profiles were detected. Of all isolates, 50.8% formed a strong biofilm, where strains isolated from geese appeared to be better at biofilm formation than strains isolated from laying and breeding hens. Single-nucleotide polymorphism genotyping revealed that
G. anatis
bv.
haemolytica
strains are restricted in host and geographical distribution, and the geese isolates showed greater phylogenetic similarity. Whole genome sequencing enabled identification of 25 different antimicrobial resistance determinants. The most common resistance genes were
tetB
,
bla
ROB-1
, and
bla
TEM-1
which may be located on mobile genetic elements. All isolates possessed the toxin gene
gtxA,
and the fimbrial gene
flfA
was identified in 95% of strains. Our results indicated that all
G. anatis
bv.
haemolytica
isolates showed multidrug resistant phenotypes. Strains isolated from geese were characterized by the highest percentage of isolates resistant to selected antimicrobials, probably reflecting host-related adaptations.
Journal Article
Albumin Nanoparticles as Multifunctional Carriers for Advanced Therapeutics
by
Federowicz, Jakub
,
Madziarska, Katarzyna
,
Kondracki, Mikołaj
in
Albumin
,
Amino acids
,
Brain research
2026
Modern medicine requires effective, continuous, and safe therapies, which largely depend on the targeted delivery and activity of the drug. This goal can be achieved by designing drug delivery systems with improved pharmacokinetic properties and enhanced drug transport to the affected tissue. Human serum albumin (HSA) is an attractive carrier for the synthesis of therapeutic nanoparticles, several of which have already been approved by the United States Food and Drug Administration (FDA). The success of Abraxane as an effective treatment for metastatic breast cancer and non-small cell lung carcinoma, the application of Optison in ultrasound imaging, and the use of Nanocoll as an agent for SPECT diagnostics in sentinel node localisation confirm the strong potential of albumin-based systems. Further benefits are expected in patients with soft tissue cancers, as LadRx is seeking FDA marketing approval for Aldoxorubicin. The future of oncology lies in theranostics, which combines a tumour-localising factor on one platform with a drug targeting cancer cells and a factor that activates the cytotoxicity of the drug after it reaches the target tissue. This article presents recent advancements in albumin-based nanoparticles for drug delivery, targeting, and imaging. It also briefly discusses methods of synthesis and surface modification of albumin nanocarriers to enable targeted delivery to pathological sites. Finally, it outlines the latest approaches in multimodal theranostic platforms, highlighting albumin’s potential to improve cancer therapy.
Journal Article