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"Wolf, Amy"
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Plasma phosphorylated tau 217 and phosphorylated tau 181 as biomarkers in Alzheimer's disease and frontotemporal lobar degeneration: a retrospective diagnostic performance study
2021
Plasma tau phosphorylated at threonine 217 (p-tau217) and plasma tau phosphorylated at threonine 181 (p-tau181) are associated with Alzheimer's disease tau pathology. We compared the diagnostic value of both biomarkers in cognitively unimpaired participants and patients with a clinical diagnosis of mild cognitive impairment, Alzheimer's disease syndromes, or frontotemporal lobar degeneration (FTLD) syndromes.
In this retrospective multicohort diagnostic performance study, we analysed plasma samples, obtained from patients aged 18–99 years old who had been diagnosed with Alzheimer's disease syndromes (Alzheimer's disease dementia, logopenic variant primary progressive aphasia, or posterior cortical atrophy), FTLD syndromes (corticobasal syndrome, progressive supranuclear palsy, behavioural variant frontotemporal dementia, non-fluent variant primary progressive aphasia, or semantic variant primary progressive aphasia), or mild cognitive impairment; the participants were from the University of California San Francisco (UCSF) Memory and Aging Center, San Francisco, CA, USA, and the Advancing Research and Treatment for Frontotemporal Lobar Degeneration Consortium (ARTFL; 17 sites in the USA and two in Canada). Participants from both cohorts were carefully characterised, including assessments of CSF p-tau181, amyloid-PET or tau-PET (or both), and clinical and cognitive evaluations. Plasma p-tau181 and p-tau217 were measured using electrochemiluminescence-based assays, which differed only in the biotinylated antibody epitope specificity. Receiver operating characteristic analyses were used to determine diagnostic accuracy of both plasma markers using clinical diagnosis, neuropathological findings, and amyloid-PET and tau-PET measures as gold standards. Difference between two area under the curve (AUC) analyses were tested with the Delong test.
Data were collected from 593 participants (443 from UCSF and 150 from ARTFL, mean age 64 years [SD 13], 294 [50%] women) between July 1 and Nov 30, 2020. Plasma p-tau217 and p-tau181 were correlated (r=0·90, p<0·0001). Both p-tau217 and p-tau181 concentrations were increased in people with Alzheimer's disease syndromes (n=75, mean age 65 years [SD 10]) relative to cognitively unimpaired controls (n=118, mean age 61 years [SD 18]; AUC=0·98 [95% CI 0·95–1·00] for p-tau217, AUC=0·97 [0·94–0·99] for p-tau181; pdiff=0·31) and in pathology-confirmed Alzheimer's disease (n=15, mean age 73 years [SD 12]) versus pathologically confirmed FTLD (n=68, mean age 67 years [SD 8]; AUC=0·96 [0·92–1·00] for p-tau217, AUC=0·91 [0·82–1·00] for p-tau181; pdiff=0·22). P-tau217 outperformed p-tau181 in differentiating patients with Alzheimer's disease syndromes (n=75) from those with FTLD syndromes (n=274, mean age 67 years [SD 9]; AUC=0·93 [0·91–0·96] for p-tau217, AUC=0·91 [0·88–0·94] for p-tau181; pdiff=0·01). P-tau217 was a stronger indicator of amyloid-PET positivity (n=146, AUC=0·91 [0·88–0·94]) than was p-tau181 (n=214, AUC=0·89 [0·86–0·93]; pdiff=0·049). Tau-PET binding in the temporal cortex was more strongly associated with p-tau217 than p-tau181 (r=0·80 vs r=0·72; pdiff<0·0001, n=230).
Both p-tau217 and p-tau181 had excellent diagnostic performance for differentiating patients with Alzheimer's disease syndromes from other neurodegenerative disorders. There was some evidence in favour of p-tau217 compared with p-tau181 for differential diagnosis of Alzheimer's disease syndromes versus FTLD syndromes, as an indication of amyloid-PET-positivity, and for stronger correlations with tau-PET signal. Pending replication in independent, diverse, and older cohorts, plasma p-tau217 and p-tau181 could be useful screening tools to identify individuals with underlying amyloid and Alzheimer's disease tau pathology.
US National Institutes of Health, State of California Department of Health Services, Rainwater Charitable Foundation, Michael J Fox foundation, Association for Frontotemporal Degeneration, Alzheimer's Association.
Journal Article
Conspecific negative density-dependent mortality and the structure of temperate forests
2014
Factors that control tree seedling dynamics are critical determinants of forest diversity. We examined the role of density-dependent mortality and abiotic factors in the differential establishment and survival of tree seedlings at three, large, mapped forest plots in Indiana, Virginia, and Wisconsin, USA. We tested whether seedling densities and seedling survival are related to local biotic and abiotic factors with generalized linear mixed models. Spatial point pattern analyses were utilized to determine if the distribution patterns of seedlings and saplings are consistent with a pattern generated by negative density-dependent mortality with respect to conspecific trees. Initial sampled seedling density for nearly a third of species showed a positive correlation with increasing conspecific basal area, indicating dispersal limitation, but few had any association with abiotic variables. By contrast, survival of seedlings over one year significantly declined with increasing conspecific basal area. Point pattern analyses indicated that nearly one-third of tree species had significantly over-dispersed point patterns of conspecific seedlings and saplings relative to adult densities; the majority of other species exhibited random spatial arrangements. Our results demonstrate-that negative conspecific density-dependent mortality of seedlings could generate the spatial patterns observed at later life stages. By differentially favoring seedlings of other species, this process may contribute to the maintenance of tree diversity in temperate forests, just as others have demonstrated for tropical forests.
Journal Article
6608 Top to toe – comparing the assessment of paediatric head injuries between paediatric and emergency physicians
by
Kirk, Rachel
,
Healy, Hannah
,
Tyagi, Vinod
in
Child abuse & neglect
,
Child Protection Special Interest Group
,
Children
2024
ObjectivesOver 1 million people attend emergency departments in England and Wales with a head injury annually, with up to 50% of these patients under the age of 15.1 Although most have minor injuries, head injuries can signify underlying safeguarding concerns. RCPCH 2018 guidance described paediatric emergency departments (PEDs) as a potential first point of contact for children who have been subjected to abuse or neglect and the active role clinicians must play in the early recognition of these individuals.2 This study aims to review the assessment of paediatric head injuries, and consideration of safeguarding concerns, in a PED in a large district general hospital, comparing the differences between paediatricians and emergency physicians.MethodsRetrospective cross-sectional study at a single PED (01/01/22 – 31/12/22). Infants up to two years of age attending with a head injury were included. All PED attendances coded as ‘head injury’ were selected for screening. Data was collected on attendance details, examination findings, consideration of non-accidental injury and whether verbal and written discharge advice was given, as per NICE head injury recommendations.3 Data was extracted from medical electronic and paper records and analysed using Microsoft Excel. A chi-square test was used to determine significance.Results383 patients were identified as having attended the department with a head injury, with 345 patients having accessible documentation (e.g., did not self-discharge or were streamed to primary care). Paediatricians were significantly more likely than emergency physicians to perform a head-to-toe examination of the child (83% vs 51%; p<0.0001), expose the child to examine the skin (90% vs 69%; p=0.000356), and document the time of the injury (98% vs 87%; p=0.005877). Emergency physicians were significantly more likely to given written and verbal head injury advice (47% vs 79%; p<0.0001).ConclusionIt is perhaps unsurprising that more time-intensive assessments of safeguarding concerns in children with head injury (head-to-toe, exposure of skin) are less commonly utilised in clinical practice in busy PEDs. This data suggests further education is needed for emergency physicians for consideration of safeguarding concerns when approaching an infant with a head injury. Despite being significantly more likely to perform these assessments, this should also be considered for paediatricians given that 17% did not perform a head-to-toe examination.References‘Context – head injury: assessment and early management: guidance.’ NICE, 18 May 2023, nice.org.uk/guidance/ng232/chapter/Context‘Facing the future: standards for children in emergency care settings.’ RCPCH, June 2018, rcpch.ac.uk/sites/default/files/2018- 06/FTFEC%20Digital%20updated%20final.pdf‘Recommendations – head injury: assessment and early management: guidance.’ NICE, 18 May 2023, https://www.nice.org.uk/guidance/ng232/chapter/Recommendations
Journal Article
An IL-18-centered inflammatory network as a biomarker for cerebral white matter injury
2020
Chronic systemic sterile inflammation is implicated in the pathogenesis of cerebrovascular disease and white matter injury. Non-invasive blood markers for risk stratification and dissection of inflammatory molecular substrates in vivo are lacking. We sought to identify whether an interconnected network of inflammatory biomarkers centered on IL-18 and all previously associated with white matter lesions could detect overt and antecedent white matter changes in two populations at risk for cerebral small vessel disease. In a cohort of 167 older adults (mean age: 76, SD 7.1, 83 females) that completed a cognitive battery, physical examination, and blood draw in parallel with MR imaging including DTI, we measured cerebral white matter hyperintensities (WMH) and free water (FW). Concurrently, serum levels of a biologic network of inflammation molecules including MPO, GDF-15, RAGE, ST2, IL-18, and MCP-1 were measured. The ability of a log-transformed population mean-adjusted inflammatory composite score (ICS) to associate with MR variables was demonstrated in an age and total intracranial volume adjusted model. In this cohort, ICS was significantly associated with WMH (β = 0.222, p = 0.013), FW (β = 0.3, p = 0.01), and with the number of vascular risk factor diagnoses (r = 0.36, p<0.001). In a second cohort of 131 subjects presenting for the evaluation of acute neurologic deficits concerning for stroke, we used serum levels of 11 inflammatory biomarkers in an unbiased principal component analysis which identified a single factor significantly associated with WMH. This single factor was strongly correlated with the six component ICS identified in the first cohort and was associated with WMH in a generalized linear regression model adjusted for age and gender (p = 0.027) but not acute stroke. A network of inflammatory molecules driven by IL-18 is associated with overt and antecedent white matter injury resulting from cerebrovascular disease and may be a promising peripheral biomarker for vascular white matter injury.
Journal Article
Phylogenetic and functional alpha and beta diversity in temperate and tropical tree communities
by
Swenson, Nathan G.
,
Bourg, Norman A.
,
Wolf, Amy
in
Abiotic stress
,
Biodiversity
,
Biological taxonomies
2012
The study of biodiversity has tended to focus primarily on relatively information-poor measures of species diversity. Recently, many studies of local diversity (alpha diversity) have begun to use measures of functional and phylogenetic alpha diversity. Investigations into the phylogenetic and functional dissimilarity (beta diversity) of communities have been far less numerous, but these dissimilarity measures have the potential to infer the mechanisms underlying community assembly and dynamics. Here, we relate levels of phylogenetic and functional alpha diversity to levels of phylogenetic and functional beta diversity to infer the mechanism or mechanisms responsible for the assembly of tree communities in six forests located in tropical and temperate latitudes. The results show that abiotic filtering plays a role in structuring local assemblages and governing spatial turnover in community composition and that phylogenetic measures of alpha and beta diversity are not strong predictors of functional alpha and beta diversity in the forests studied.
Journal Article
Mechanisms underlying local functional and phylogenetic beta diversity in two temperate forests
by
Swenson, Nathan G.
,
Wiegand, Thorsten
,
Wolf, Amy T.
in
Biodiversity
,
Biological taxonomies
,
Changbaishan, China (CBS)
2015
Although trait information has been widely used to explore underlying mechanisms of forest community structure, most studies have focused on local patterns of phylogenetic or functional alpha diversity. Investigations of functional beta diversity, on the other hand, have not been conducted at local scales in a spatially explicit way. In this study, we provide a powerful methodology based on recent advances in spatial point pattern analysis using fully mapped data of large and small trees in two large temperate forest plots. This approach allowed us to assess the relative importance of different ecological processes and mechanisms for explaining patterns of local phylogenetic and functional beta diversity. For both forests and size classes, we found a clear hierarchy of scales: habitat filtering accounted for patterns of phylogenetic and functional beta diversity at larger distances (150-250 m), dispersal limitation accounted for the observed decline in beta diversity at distances below 150 m, and species interactions explained small departures from functional and phylogenetic beta diversity at the immediate plant-neighborhood scale (below 20 m). Thus, both habitat filtering and dispersal limitation influenced the observed patterns in phylogenetic and functional beta diversity at local scales. This result contrasts with a previous study from the same forests, where dispersal limitation alone approximated the observed species beta diversity for distances up to 250 m. In addition, species interactions were relatively unimportant for predicting phylogenetic and functional beta diversity. Our analysis suggests that phylogenetic and functional beta diversity can provide insights into the mechanisms of local community assembly that are missed by studies focusing exclusively on species beta diversity.
Journal Article
REM sleep is associated with white matter integrity in cognitively healthy, older adults
2020
There is increasing awareness that self-reported sleep abnormalities are negatively associated with brain structure and function in older adults. Less is known, however, about how objectively measured sleep associates with brain structure. We objectively measured at-home sleep to investigate how sleep architecture and sleep quality related to white matter microstructure in older adults. 43 cognitively normal, older adults underwent diffusion tensor imaging (DTI) and a sleep assessment within a six-month period. Participants completed the PSQI, a subjective measure of sleep quality, and used an at-home sleep recorder (Zeo, Inc.) to measure total sleep time (TST), sleep efficiency (SE), and percent time in light sleep (LS), deep sleep (DS), and REM sleep (RS). Multiple regressions predicted fractional anisotropy (FA) and mean diffusivity (MD) of the corpus callosum as a function of total PSQI score, TST, SE, and percent of time spent in each sleep stage, controlling for age and sex. Greater percent time spent in RS was significantly associated with higher FA (β = 0.41, p = 0.007) and lower MD (β = -0.30, p = 0.03). Total PSQI score, TST, SE, and time spent in LS or DS were not significantly associated with FA or MD (p>0.13). Percent time spent in REM sleep, but not quantity of light and deep sleep or subjective/objective measures of sleep quality, positively predicted white matter microstructure integrity. Our results highlight an important link between REM sleep and brain health that has the potential to improve sleep interventions in the elderly.
Journal Article
Stochastic dilution effects weaken deterministic effects of niche-based processes in species rich forests
by
Swenson, Nathan G.
,
Su, Sheng-Hsin
,
Wang, Xugao
in
Biodiversity
,
coexistence theory
,
community structure
2016
Recent theory predicts that stochastic dilution effects may result in species-rich communities with statistically independent species spatial distributions, even if the underlying ecological processes structuring the community are driven by deterministic niche differences. Stochastic dilution is a consequence of the stochastic geometry of biodiversity where the identities of the nearest neighbors of individuals of a given species are largely unpredictable. Under such circumstances, the outcome of deterministic species interactions may vary greatly among individuals of a given species. Consequently, nonrandom patterns in the biotic neighborhoods of species, which might be expected from coexistence or community assembly theory (e.g., individuals of a given species are neighbored by phylogenetically similar species), are weakened or do not emerge, resulting in statistical independence of species spatial distributions. We used data on phylogenetic and functional similarity of tree species in five large forest dynamics plots located across a gradient of species richness to test predictions of the stochastic dilution hypothesis. To quantify the biotic neighborhood of a focal species we used the mean phylogenetic (or functional) dissimilarity of the individuals of the focal species to all species within a local neighborhood. We then compared the biotic neighborhood of species to predictions from stochastic null models to test if a focal species was surrounded by more or less similar species than expected by chance. The proportions of focal species that showed spatial independence with respect to their biotic neighborhoods increased with total species richness. Locally dominant, high-abundance species were more likely to be surrounded by species that were statistically more similar or more dissimilar than expected by chance. Our results suggest that stochasticity may play a stronger role in shaping the spatial structure of species rich tropical forest communities than it does in species poorer forests. These findings represent an important step towards understanding the factors that govern the spatial configuration of local biotic communities. The stochastic dilution effect is a simple geometric mechanism that can explain why species' spatial distributions in species-rich communities approximate independence from their biotic neighborhood, even if deterministic niche processes are in effect.
Journal Article
Tree co-occurrence and transcriptomic response to drought
by
Swenson, Nathan G.
,
Umaña, María Natalia
,
Petprakob, Krittika
in
631/158/2454
,
631/158/853
,
Community structure
2017
The distribution and co-occurrence of species are partly the outcome of their interactions with environmental drivers. Drought is a key driver related to the distribution of plant species. Drought events continue to increase in frequency and severity and identifying those aspects of plant function that are related to drought is critical. Here, we perform a community-level analysis of gene expression in relation to experimental drought and relate the similarity in gene set enrichment across species to their natural co-occurrence. Species with similar gene set enrichment in response to experimental drought tend to non-randomly co-occur in a natural stand. We demonstrate that similarity in the transcriptomic response of species to drought is a significantly better indicator of natural co-occurrence than measures of functional trait similarity and phylogenetic relatedness and that transcriptomics has the capacity to greatly enhance ecological investigations of species distributions and community structure.
Drought has a major influence on plant distribution. Here, Swenson et al. show that a similar gene expression response to experimental drought outperforms traditional functional traits and phylogenetic relatedness as a predictor of co-occurrence of tree species in a natural stand.
Journal Article
Spatial patterns of tree species richness in two temperate forests
by
Wang, Xugao
,
Wolf, Amy
,
Wiegand, Thorsten
in
aggregation
,
Animal and plant ecology
,
Animal, plant and microbial ecology
2011
1. The relative contribution of external vs. internal clustering mechanisms for determining community structure and its manifestations has been the subject of a continuous debate, but few attempts have been made to examine their single and joint effects in a compound process model. 2. In this study, we tested four a priori hypotheses on the relative importance of habitat heterogeneity (topography and soil) and internal clustering mechanisms such as dispersal limitation on the species–area relationship (SAR) in two fully mapped 25‐ha plots of temperate forests in the Changbaishan (CBS) Nature Reserve, China, and the Chequamegon‐Nicolet National Forest in Wisconsin, USA. 3. We used the distance decay curve to test the generality of the results obtained for the SAR. To find out if the relative importance of internal and external clustering mechanisms changed with life stage, we conducted separate analyses for small, large and all trees. 4. Model selection favoured the most complex hypothesis that assumed an influence of both habitat heterogeneity and internal clustering on SAR and the distance decay curve. For the CBS plot, which shows weak topographical structuring, models were consistent with data only if soil factors were included into assessment of habitat heterogeneity. At the Wabikon plot, we could not test soil variables, but inclusion of topographical variables substantially improved the fit of the distance decay curve. 5. In general, the results of the SAR agreed with those of the distance decay curve, but the latter was sensitive to positive habitat‐mediated species associations. The SAR, but not distance decay, distinguished among competing hypotheses for the community of large trees at CBS, where species exhibited only weak clustering. 6. Contrary to our expectations, we did not find substantial differences in the relative importance of internal and external clustering mechanisms with life stage. 7. Synthesis. Our analysis of spatial community structure for two relatively diverse temperate forests revealed that the factors governing spatial community structure may not substantially differ from those in highly diverse tropical forests. This result adds to our understanding of the ecological processes underlying the spatial diversity structure in natural forest communities.
Journal Article