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"Wood, Hannah"
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Ocean acidification may increase calcification rates, but at a cost
Ocean acidification is the lowering of pH in the oceans as a result of increasing uptake of atmospheric carbon dioxide. Carbon dioxide is entering the oceans at a greater rate than ever before, reducing the ocean's natural buffering capacity and lowering pH. Previous work on the biological consequences of ocean acidification has suggested that calcification and metabolic processes are compromised in acidified seawater. By contrast, here we show, using the ophiuroid brittlestar Amphiura filiformis as a model calcifying organism, that some organisms can increase the rates of many of their biological processes (in this case, metabolism and the ability to calcify to compensate for increased seawater acidity). However, this upregulation of metabolism and calcification, potentially ameliorating some of the effects of increased acidity comes at a substantial cost (muscle wastage) and is therefore unlikely to be sustainable in the long term.
Journal Article
Interrogating Genomic-Scale Data to Resolve Recalcitrant Nodes in the Spider Tree of Life
Genome-scale data sets are converging on robust, stable phylogenetic hypotheses for many lineages; however, some nodes have shown disagreement across classes of data. We use spiders (Araneae) as a system to identify the causes of incongruence in phylogenetic signal between three classes of data: exons (as in phylotranscriptomics), noncoding regions (included in ultraconserved elements [UCE] analyses), and a combination of both (as in UCE analyses). Gene orthologs, coded as amino acids and nucleotides (with and without third codon positions), were generated by querying published transcriptomes for UCEs, recovering 1,931 UCE loci (codingUCEs). We expected that congeners represented in the codingUCE and UCEs data would form clades in the presence of phylogenetic signal. Noncoding regions derived from UCE sequences were recovered to test the stability of relationships. Phylogenetic relationships resulting from all analyses were largely congruent. All nucleotide data sets from transcriptomes, UCEs, or a combination of both recovered similar topologies in contrast with results from transcriptomes analyzed as amino acids. Most relationships inferred from low-occupancy data sets, containing several hundreds of loci, were congruent across Araneae, as opposed to high occupancy data matrices with fewer loci, which showed more variation. Furthermore, we found that low-occupancy data sets analyzed as nucleotides (as is typical of UCE data sets) can result in more congruent relationships than high occupancy data sets analyzed as amino acids (as in phylotranscriptomics). Thus, omitting data, through amino acid translation or via retention of only high occupancy loci, may have a deleterious effect in phylogenetic reconstruction.
Journal Article
One snowy day
Penguin loves snowy days. One snowy day means one woolly hat, two warm mittens, three happy friends--and lots of fun!
Book
Understanding university students’ experiences of sitting while studying at home: A qualitative study
University students are typically highly sedentary, which is associated with adverse physical and mental health outcomes. Attempts to understand university students’ sedentary behaviour have typically focused on on-campus teaching and learning activities. While such research has documented that students perceive studying as one of the main barriers to reducing sedentary behaviour, there is little understanding of how and why studying incurs sitting, especially during home-based studying. We investigated how students’ experience sitting when studying at home. Fourteen UK undergraduates (10 female; mean age = 20 years) participated in semi-structured interviews that explored their experiences, beliefs, and attitudes regarding sitting while studying at home. Data were analysed using Reflexive Thematic Analysis. Four themes were constructed, focusing on knowledge and attitudes towards sitting, prioritisation of study tasks, sitting as an integral part of the study environment, and sitting as part of the optimal mental ‘zone’. Whilst participants demonstrated awareness of the potential health risks associated with prolonged sitting they prioritised productivity when studying at home and believed that interrupting their sitting would compromise productivity, making home-based studying particularly conducive to sedentary behaviour. These findings suggest that intervention designers should more explicitly consider the home environment when aiming to reduce student sedentary behaviour and should seek to reduce sitting in a way that promotes, or at least does not interfere with, productivity.
Journal Article
One sunny day
One sunny day, Bear enjoys a square sandbox, star sunglasses, circle bubbles, oval watermelons, and a special surprise from Mommy and Daddy.
Book
Investigation of Demographic Factors in Construction Employees’ Safety Perceptions
This study focused on the effects of these demographic factors on construction employees’ safety perceptions. It first initiated a theoretical framework illustrating the impacts of demographic factors (i.e., education level, gender, and age) on employee’s perceptions towards pre-defined site hazards as well as their general safety perception. Then site questionnaire survey approach was adopted in nine construction jobsites in southeastern China followed by statistical analysis. The study revealed that construction employees’ education level, although not affecting their perceptions towards safety hazards/accidents, could create differences in other general safety perceptions between management staff and workers. Gender differences were found in safety perceptions of hazard/accident scenes and general safety perceptions, indicating that gender issue in safety perceptions applied consistently crossing different industries. Employees between 37 and 46 years old tended to underestimate safety risks from commonly encountered hazards, suggesting the needs of continued safety refreshers for employees in the middle of their career. This study contributed to the body of knowledge in safety perceptions by investigating the effect of three major subgroup or demographic factors, including education level, gender, and age, which had not been sufficiently addressed in construction safety subculture or sub-climate.
Journal Article
Sorry : the little word that goes a long way
The animals in this story are learning that everyone needs to say \"sorry\" sometimes. Luckily, they all have wise friends to show them how.
Book
Sequence Capture Phylogenomics of True Spiders Reveals Convergent Evolution of Respiratory Systems
The common ancestor of spiders likely used silk to line burrows or make simple webs, with specialized spinning organs and aerial webs originating with the evolution of the megadiverse “true spiders” (Araneomorphae). The base of the araneomorph tree also concentrates the greatest number of changes in respiratory structures, a character system whose evolution is still poorly understood, and that might be related to the evolution of silk glands. Emphasizing a densesampling of multiple araneomorph lineages where tracheal systems likely originated, we gathered genomic-scale data and reconstructed a phylogeny of true spiders. This robust phylogenomic framework was used to conduct maximum likelihood and Bayesian character evolution analyses for respiratory systems, silk glands, and aerial webs, based on a combination of original and published data. Our results indicate that in true spiders, posterior book lungs were transformed into morphologically similar tracheal systems six times independently, after the evolution of novel silk gland systems and the origin of aerial webs. From these comparative data, we put forth a novel hypothesis that early-diverging web-building spiders were faced with new energetic demands for spinning, which prompted the evolution of similar tracheal systems via convergence; we also propose tests of predictions derived from this hypothesis.
Journal Article