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result(s) for
"Wright, Crystal"
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Con job : how Democrats gave us crime, sanctuary cities, abortion profiteering, and racial division
\"Democrats have pulled a big con job on blacks in America. Black voters have overwhelmingly supported the Democratic Party for the last fifty years. Where has that support gotten the black community? Democrats have let black incarceration rates rise and marriage rates drop. They've let entire neighborhoods become dependent on welfare, and they've let education and job opportunities dwindle. So why do black voters keep voting for progressive Democratic candidates? Crystal Wright, editor of the blog Conservative Black Chick, takes the Democratic Party to task in this bold, biting expose of the Democrats' systematic betrayal of the blindly loyal black community\"-- Provided by publisher.
ChIP-seq accurately predicts tissue-specific activity of enhancers
by
Ren, Bing
,
Afzal, Veena
,
Wright, Crystal
in
Animals
,
Binding sites
,
Chromatin Immunoprecipitation - methods
2009
A major yet unresolved quest in decoding the human genome is the identification of the regulatory sequences that control the spatial and temporal expression of genes. Distant-acting transcriptional enhancers are particularly challenging to uncover because they are scattered among the vast non-coding portion of the genome. Evolutionary sequence constraint can facilitate the discovery of enhancers, but fails to predict when and where they are active
in vivo
. Here we present the results of chromatin immunoprecipitation with the enhancer-associated protein p300 followed by massively parallel sequencing, and map several thousand
in vivo
binding sites of p300 in mouse embryonic forebrain, midbrain and limb tissue. We tested 86 of these sequences in a transgenic mouse assay, which in nearly all cases demonstrated reproducible enhancer activity in the tissues that were predicted by p300 binding. Our results indicate that
in vivo
mapping of p300 binding is a highly accurate means for identifying enhancers and their associated activities, and suggest that such data sets will be useful to study the role of tissue-specific enhancers in human biology and disease on a genome-wide scale.
Mapping gene enhancers
Determining the spatial and temporal activity patterns of enhancers, short DNA segments that can bind to regulatory proteins to enhance gene transcription levels, remains a challenge in the functional annotation of the human genome. The
in vivo
application of ChIP-seq (chromatin immunoprecipitation with massively parallel sequencing) has been used to map genome-wide occupancy of the enhancer-associated protein p300 in developing mouse tissues. There are several thousand p300 binding sites in the embryonic forebrain, midbrain and limb tissues, and testing a sample of these suggests that most are associated with reproducible enhancer activity. Data sets of this type will be useful in the study of the role of enhancers in human biology and in pathological processes.
Determining the spatial and temporal activity patterns of enhancers remains a challenge in the functional annotation of the human genome. In this study, the genome-wide occupancy of the enhancer-associated protein p300 was determined in developing mouse tissues by using chromatin immunoprecipitation followed by massively parallel sequencing. Testing the p300-bound sequences in a transgenic mouse enhancer assay confirmed that p300 binding is a highly effective means to identify enhancers and to predict in which tissues they are active.
Journal Article
Navigating professionalism challenges: Impact on patient safety
by
Wright, Crystal
,
Tsao, Anne
,
Triller, Maureen
in
Anesthesia
,
Anesthesiology - standards
,
Collaboration
2024
[Display omitted]
•The contemporary healthcare focus has shifted towards recognizing the crucial role of teamwork and in patient safety•Unprofessional conduct, especially within surgical teams, has been linked to elevated risks of adverse outcomes.•High psychological safety levels correlate with increased reporting of errors, contributing to improved patient safety•The paradigm shift toward professionalism and patient safety requires organizational effort and individual accountability.
Journal Article
ChIP-Seq identification of weakly conserved heart enhancers
by
Bristow, James
,
Akiyama, Jennifer A
,
Ren, Bing
in
631/1647/2217/2088
,
631/181/735
,
631/208/726/2102
2010
Len Pennacchio and colleagues used ChIP-Seq with the enhancer-associated protein p300 to identify 3,000 candidate cardiac transcriptional enhancers in embryonic mice at E11.5. Notably, most candidate heart enhancers at this time point are not deeply evolutionarily conserved.
Accurate control of tissue-specific gene expression plays a pivotal role in heart development, but few cardiac transcriptional enhancers have thus far been identified. Extreme noncoding-sequence conservation has successfully predicted enhancers that are active in many tissues but has failed to identify substantial numbers of heart-specific enhancers. Here, we used ChIP-Seq with the enhancer-associated protein p300 from mouse embryonic day 11.5 heart tissue to identify over 3,000 candidate heart enhancers genome wide. Compared to enhancers active in othertissues we studied at this time point, most candidate heart enhancers were less deeply conserved in vertebrate evolution. Nevertheless, transgenic mouse assays of 130 candidate regions revealed that most function reproducibly as enhancers active in the heart, irrespective of their degree of evolutionary constraint. These results provide evidence for a large population of poorly conserved heart enhancers and suggest that the evolutionary conservation of embryonic enhancers can vary depending on tissue type.
Journal Article
Large-scale discovery of enhancers from human heart tissue
by
Bristow, James
,
Akiyama, Jennifer A
,
Kaplan, Tommy
in
631/208/191
,
631/208/2489/144
,
631/443/592/2726
2012
Len Pennacchio, Axel Visel and colleagues use an epigenomic approach to identify a large number of candidate enhancers from human heart tissue. This work will facilitate further studies into the role of enhancers in human cardiac development and disease.
Development and function of the human heart depend on the dynamic control of tissue-specific gene expression by distant-acting transcriptional enhancers. To generate an accurate genome-wide map of human heart enhancers, we used an epigenomic enhancer discovery approach and identified ∼6,200 candidate enhancer sequences directly from fetal and adult human heart tissue. Consistent with their predicted function, these elements were markedly enriched near genes implicated in heart development, function and disease. To further validate their
in vivo
enhancer activity, we tested 65 of these human sequences in a transgenic mouse enhancer assay and observed that 43 (66%) drove reproducible reporter gene expression in the heart. These results support the discovery of a genome-wide set of noncoding sequences highly enriched in human heart enhancers that is likely to facilitate downstream studies of the role of enhancers in development and pathological conditions of the heart.
Journal Article
Clinical and radiological implications of subpotent generic fingolimod in multiple sclerosis: a case series
by
Moog, Tatum M.
,
Burgess, Katy W.
,
Munoz, Shanan B.
in
Case Series
,
Generic products
,
Lymphocytes
2024
An expansion in the availability of generic specialty disease modifying therapies (DMTs) for treatment of multiple sclerosis (MS) has increased recently. Generic specialty medications aim to provide greater access to molecules that alter the disease trajectory at lower costs. The US Food and Drug Administration requires generic products to contain between 90% and 110% of the stated active ingredient and an 80%–125% bioequivalence range. We present the clinical experiences and absolute lymphocyte counts (ALC) trends of six people with MS originally treated with Gilenya® (fingolimod) 0.5 mg who were required to transition to generic fingolimod 0.5 mg by third-party administrators, and the medication content from recovered products. Six individuals with acute clinical exacerbations or disease advancement on MRI were identified during routine scheduled visits from a tertiary care center and consecutively included from January 2024 to August 2024. ALC trends were constructed for each individual during Gilenya® and generic fingolimod treatment. These individuals experienced signs of disease advancement while on generic fingolimod 0.5 mg at approximately 1 year of treatment and elevations in ALC, a biological metric related to the mechanism of action of sphingsine-1-phosphate receptor modulation, were observed following the transition. High purity fingolimod for standardization tests, Gilenya® 0.5 mg, and five recovered generic fingolimod 0.5 mg products were independently tested in an accredited laboratory. Gilenya® 0.5 mg capsules had an average fingolimod content of 97.7% (standard deviation (SD) = 2.59%). Three recovered generic fingolimod 0.5 mg products used during relapses had an average content of 91.2% (3.25%), 81.6% (6.24%), and 72.5% (2.05%). Two generic fingolimod 0.5 mg products not associated with relapse activity revealed averages of 97.4% (1.82%) and 103.3% (3.77%). Subpotent generic specialty DMTs may not only result in greater risk for disease activity but may also expose individuals to the potential for disease rebound, depending on the mechanism of action.
Journal Article
Asymptomatic progressive multifocal leukoencephalopathy: a case report and review of the literature
2018
Background
We report the development of asymptomatic progressive multifocal leukoencephalopathy in a patient with multiple sclerosis on natalizumab therapy. Progressive multifocal leukoencephalopathy often presents with debilitating neurologic symptoms. Very few cases have documented a completely asymptomatic course of the disease.
Case presentation
A 26-year-old white woman with multiple sclerosis was treated with natalizumab. She was diagnosed as having progressive multifocal leukoencephalopathy based on characteristic magnetic resonance imaging lesions after 27 infusions of natalizumab. She had no neurologic deficits at the time of diagnosis and John Cunningham virus in cerebrospinal fluid was detected at 15 copies/ml. She was initially treated with mefloquine and mirtazapine and remained asymptomatic for 3 months. She later developed worsening magnetic resonance imaging lesions related to immune reconstitution inflammatory syndrome. At that time, she received intravenously administered immunoglobulin and high-dose intravenously administered methylprednisolone with radiologic improvement of the lesions.
Conclusions
Our case report illustrates that early detection of asymptomatic progressive multifocal leukoencephalopathy and its subsequent treatment resulted in a benign clinical course. In consideration of the additional small number of cases of asymptomatic progressive multifocal leukoencephalopathy that have been reported, we conclude that routine magnetic resonance imaging surveillance is important for patients with multiple sclerosis who are at high risk for developing natalizumab-associated progressive multifocal leukoencephalopathy.
Journal Article
The sequential natalizumab – alemtuzumab therapy in patients with relapsing forms of multiple sclerosis (SUPPRESS) trial – Part I: Rationale and objectives
2022
Background
Natalizumab is a recombinant humanized monoclonal antibody (mAb) against α4-integrin that is approved for relapsing forms of multiple sclerosis (MS). Natalizumab is associated with an increased risk of developing progressive multifocal leukoencephalopathy (PML), and with disease reactivation after cessation of treatment that is likely mediated by an accumulation of pro-inflammatory lymphocytes in the blood during therapy. Alemtuzumab is a mAb against CD52 that reduces the number of peripheral lymphocytes.
Rationale
To determine if treatment with alemtuzumab after natalizumab reduces disease activity in patients with relapsing forms of MS. This review article will outline the rationale and objectives of the sequential natalizumab – alemtuzumab therapy in patients with relapsing forms of multiple sclerosis (SUPPRESS; ClinicalTrials.gov ID: NCT03135249) trial in greater detail than would be feasible in a manuscript that summarizes the study results.
Methods
The SUPPRESS trial is single arm, open-label, multicenter, efficacy pilot study that aims to establish a disease-free state over a 24-months period in patients who received the natalizumab- alemtuzumab sequential therapy. Participants will be recruited from four different sites. The primary endpoint is the annualized relapse rate (ARR) from the time of cessation of natalizumab treatment. Key secondary endpoint is freedom of relapse at 12-months, the number of new/enlarging T2 lesions on magnetic resonance imaging (MRI), and the number of gadolinium (Gd)-enhancing lesions on MRI. An exploratory endpoint is the Expanded Disability Status Scale (EDSS), retinal nerve fiber layer (RNFL) thickness assessment by optic coherence tomography (OCT) and assessment of quality of life (QoL) measures by a pre-defined, self-administered testing battery. To evaluate immunological effects, blood leukocytes will be collected and immunophenotyped by multi-parameter flow cytometry.
Conclusion
The SUPPRESS trial will provide clinical, imaging, and biological data to determine whether sequential natalizumab to alemtuzumab combination therapy establish a disease-free state in patients with relapsing forms of MS.
Journal Article
A Genetic Signature of Spina Bifida Risk from Pathway-Informed Comprehensive Gene-Variant Analysis
by
Lipzen, Anna
,
Witte, John S.
,
Lammer, Edward J.
in
Alleles
,
BASIC BIOLOGICAL SCIENCES
,
Biology
2011
Despite compelling epidemiological evidence that folic acid supplements reduce the frequency of neural tube defects (NTDs) in newborns, common variant association studies with folate metabolism genes have failed to explain the majority of NTD risk. The contribution of rare alleles as well as genetic interactions within the folate pathway have not been extensively studied in the context of NTDs. Thus, we sequenced the exons in 31 folate-related genes in a 480-member NTD case-control population to identify the full spectrum of allelic variation and determine whether rare alleles or obvious genetic interactions within this pathway affect NTD risk. We constructed a pathway model, predetermined independent of the data, which grouped genes into coherent sets reflecting the distinct metabolic compartments in the folate/one-carbon pathway (purine synthesis, pyrimidine synthesis, and homocysteine recycling to methionine). By integrating multiple variants based on these groupings, we uncovered two provocative, complex genetic risk signatures. Interestingly, these signatures differed by race/ethnicity: a Hispanic risk profile pointed to alterations in purine biosynthesis, whereas that in non-Hispanic whites implicated homocysteine metabolism. In contrast, parallel analyses that focused on individual alleles, or individual genes, as the units by which to assign risk revealed no compelling associations. These results suggest that the ability to layer pathway relationships onto clinical variant data can be uniquely informative for identifying genetic risk as well as for generating mechanistic hypotheses. Furthermore, the identification of ethnic-specific risk signatures for spina bifida resonated with epidemiological data suggesting that the underlying pathogenesis may differ between Hispanic and non-Hispanic groups.
Journal Article
Helpers and Hindrances: The Role of Ecological Factors Mediating Future Biological Control of Sorghum Aphids
2021
Aphids are among the most damaging pests of cereal crops. Because aphid control is largely chemical, little attention has been given to ecological complexities that promote aphids’ success. How aphids interact with antagonists (natural enemies) and potential mutualists (ants) is important because these interactions can impact the feasibility of biological pest control. One recent and invasive pest of grain sorghum, Sorghum bicolor, is the sorghum aphid, Melanaphis sorghi (SA). Understanding this pest’s ecology in the grain sorghum agroecosystem is critical to developing SA control strategies. Consequently, this dissertation studied SA interactions with a common parasitoid (Aphelinus nigritus) and a potential ant mutualist (the red imported fire ant Solenopsis invicta (RIFA)) to assess the practicality of SA biocontrol. Since parasitoids often use aphid honeydew as a sugar resource, SA honeydew was first assessed as a potential attractant to A. nigritus. As SA feeds on grain sorghum and the nearby overwintering host Johnson grass, Sorghum halepense, A. nigritus preference for SA honeydew produced on either host plant was also assessed. Ultimately, A. nigritus was attracted to SA honeydew and preferred honeydew produced on Johnson grass, which could support the augmentation of this parasitoid in Johnson grass to suppress SAs before grain sorghum is planted. Second, a potential for SA to exhibit fecundity compensation (i.e., a rapid increase in reproduction in response to natural enemies) was explored to determine whether SAs could defend themselves by increasing their fecundity after experiencing wounding akin to parasitoid oviposition. Fecundity compensation was observed in daughters of aphid mothers parasitized by A. nigritus, which may question the use of certain parasitoids in SA biocontrol programs. Third, the effects of RIFAs on SA population growth were assessed over two field seasons. It was determined that RIFA increases SA populations, but only when initial aphid densities are low. This result provides baseline data on potential mutualistic interactions between two invasive species, SA and RIFA, allowing future monitoring of its evolution. As a relatively new invader, the 2013 arrival of SA grants a unique opportunity to explore aphid ecological adaptations to new environments, an often-overlooked factor that may inform future biocontrol.
Dissertation