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The molecular weight, the triple-helix conformation, the monosaccharide content, the manner of glycosidic linkages, and the polysaccharide conjugates of polysaccharides all affect bioactivity. The purpose of this study was to determine how different molecular weights affected the bioactivity of the Lycium barbarum polysaccharides (LBPs). By ethanol-graded precipitation and ultrafiltration membrane separation, one oligosaccharide (LBPs-1, 1.912 kDa) and two polysaccharides (LBPs-2, 7.481 kDa; LBPs-3, 46.239 kDa) were obtained from Lycium barbarum. While the major component of LBPs-1 and LBPs-2 was glucose, the main constituents of LBPs-3 were arabinose, galactose, and glucose. LBPs-2 and LBPs-3 exhibited triple-helix conformations, as evidenced by the Congo red experiment and AFM data. Sugar residues of LBPs-2 and LBPs-3 were elucidated by NMR spectra. The polysaccharides (LBPs-2 and LBPs-3) exhibited much higher antioxidant capacities than oligosaccharide (LBPs-1). LBPs-3 showed higher oxygen radical absorbance capacity (ORAC) and superoxide dismutase (SOD) activity than LBPs-2, but a lower capability for scavenging ABTS+ radicals. In zebrafish, LBPs-2 and LBPs-3 boosted the growth of T-lymphocytes and macrophages, enhanced the immunological response, and mitigated the immune damage generated by VTI. In addition to the molecular weight, the results indicated that the biological activities would be the consequence of various aspects, such as the monosaccharide composition ratio, the chemical composition, and the chemical reaction mechanism.

For exploring structurally diverse metabolites and uniquely metabolic mechanisms, we systematically investigated the chemical constituents and putative biosynthesis of Janibacter sp. SCSIO 52865 derived from the deep-sea sediment based on the OSMAC strategy, molecular networking tool, in combination with bioinformatic analysis. As a result, one new diketopiperazine (1), along with seven known cyclodipeptides (2–8), trans-cinnamic acid (9), N-phenethylacetamide (10) and five fatty acids (11–15), was isolated from the ethyl acetate extract of SCSIO 52865. Their structures were elucidated by a combination of comprehensive spectroscopic analyses, Marfey’s method and GC-MS analysis. Furthermore, the analysis of molecular networking revealed the presence of cyclodipeptides, and compound 1 was produced only under mBHI fermentation condition. Moreover, bioinformatic analysis suggested that compound 1 was closely related to four genes, namely jatA–D, encoding core non-ribosomal peptide synthetase and acetyltransferase.

Xiaozhou mustard ( Brassica napiformis ) root tuber, a traditional fermented vegetable, has a long history in Rongan County, Guangxi Province. However, the frequent occurrence of root tuber sour rot by Geotrichum candidum ( G. candidum ) has seriously reduced Xiaozhou mustard production and quality in recent years. The objective of the present study is to investigate the antifungal efficacy of 2-chloro-5-trifluoromethoxybenzeneboronic acid (Cl-F-BBA) against G. candidum and its possible mechanisms. The results revealed that a concentration of 0.25 mg/mL Cl-F-BBA completely halted mycelial growth and spore germination. Furthermore, a slightly lower concentration of 0.20 mg/mL was sufficient to compromise the integrity of the plasma membrane in mycelia and mitochondria, leading to a reduction in respiratory rate, activities of malate dehydrogenase (MDH), and succinate dehydrogenase (SDH), ATP content, and energy charge. This concentration also significantly disordered antioxidant metabolism, resulting in the accumulation of reactive oxygen species (ROS) and malondialdehyde (MDA), and caused intracellular leakage in mycelia. In vivo experiments further demonstrated that Xiaozhou mustard root tubers treated with Cl-F-BBA exhibited markedly lower decay rates and lesion diameters compared to the control group. In summary, Cl-F-BBA presents a promising solution for controlling root tuber sour rot in Xiaozhou mustard caused by G. candidum .

Background Ferroptosis and immune responses are critical pathological events in spinal cord injury (SCI), whereas relative molecular and cellular mechanisms remain unclear. Methods Micro-array datasets (GSE45006, GSE69334), RNA sequencing (RNA-seq) dataset (GSE151371), spatial transcriptome datasets (GSE214349, GSE184369), and single cell RNA sequencing (scRNA-seq) datasets (GSE162610, GSE226286) were available from the Gene Expression Omnibus (GEO) database. Through weighted gene co-expression network analysis and differential expression analysis in GSE45006, we identified differentially expressed time- and immune-related genes (DETIRGs) associated with chronic SCI and differentially expressed ferroptosis- and immune-related genes (DEFIRGs), which were validated in GSE151371. Protein–protein interaction and microRNA-mRNA-transcription factor regulatory networks were constructed based on Search Tool for the Retrieval of Interacting Genes (STRING) and NetworkAnalyst, respectively, which were validated by chromatin immunoprecipitation followed by sequencing (ChIP-seq). Cell subclusters and unique features of microglia in SCI were identified by single-cell transcriptomic analysis, which were validated in GSE226286. Spatial expression patterns of DETIRGs and DEFIRGs were validated in brain injury (GSE214349) and SCI (GSE184369). Potential mechanisms underlying neuronal regeneration by neurotrophin-3 (NT3)-chitosan were revealed by transcriptomic analyses in GSE69334. Immune- and ferroptosis-related mechanisms of nanolayered double hydroxide loaded with NT3 (LDH-NT3) were investigated in vivo and in vitro. Results GBP2, TEC, UNC93B1, PLXNC1, NFATC1, IL10RB, and TLR8 were DETIRGs represented chronic SCI-specific genes and peripheral blood biomarkers. NFKB1 may regulate expression of CYBB and HMOX1 in a unique subcluster of M1 microglia within the middle SCI lesion, establishing links between microglial ferroptosis and neuroinflammation. Reduced inflammatory responses and microglial ferroptosis were potential effects of NT3-chitosan or LDH-NT3 on neuronal regeneration. Conclusions A novel subcluster of microglia exhibiting M1 polarization and ferroptosis phenotype was involved in SCI. These microglia may trigger neuroinflammation and induce neuronal degeneration within the middle site of SCI, which might be inhibited by NT3-chitosan or LDH-NT3.

Background: The Fujiang River, a first-order branch of Jialing River, has for years been separated into six segments by six cascading hydropower stations in its downstream. However, the impact of cascading hydropower stations on its aquatic biota communities remains unclear. Methods: eDNA samples were collected in the upper, middle, and lower reaches of each river fragment during March, May, July, and December 2023, and after species identification, various statistical analyses including β-diversity, NMDS and MantelTest were performed using the R platform. Results: A total of 82 fish species belonging to 15 families were identified. The fish communities in the six fragments of the downstream Fujiang River showed a high degree of overlap, and a notable aggregation of fish communities between the upper, middle, and lower areas within each river section was also observed. Flow velocity (FV) and water temperature (TEMP) were found to be important factors in shaping fish distribution. Conclusion: Fish composition and distribution trend towards homogenization in the downstream of the Fujiang River.

(1) Background: Affected by multiple factors, the decline in fish species diversity in some aquatic ecosystems has become increasingly pronounced. At a broad spatial scale, economic development has been widely recognized as one of the key factors influencing the fish distribution pattern. However, at a small scale, within a single river basin, the effects of economic development on the freshwater fish distribution and communities remain largely uninvestigated. (2) Methods: environmental DNA (eDNA) samples were collected from 26 sampling sites of the Lixian River in both the summer (June) and winter (November). Economic data from the Lixian River basin were collected, and analyses, including multivariate regression tree analysis and generalized linear model fitting, were performed using R 4.3.2. (3) Results: A total of 65 fish species was characterized, and the Chao1 diversity indices in the upstream (13.42) and downstream (13.00) were significantly higher than those in the middle reaches (8.55, p < 0.01) of this river. The species communities exhibited an obvious gradient changing pattern from the upstream to the downstream reaches, with parameters of water quality, including transparency, pH, dissolved oxygen and temperature, and climatic factors functioning as the key variables. Furthermore, the generalized linear model analysis revealed significant positive correlations between agricultural population (p = 0.00106), total grain production (p = 0.00476), total population (p = 0.00192) and the Chao1 index. (4) Conclusions: Climatic factors are the key factors affecting the fish diversity in the Lixian River. In less economically developed areas, the development of local economic activities may enhance fish diversity.

An ethyl acetate extract of a marine actinomycete strain, Nocardiopsis mentallicus SCSIO 53858, isolated from a deep-sea sediment sample in the South China Sea, exhibited anti-quorum-sensing (QS) activity against Chromobacterium violaceum CV026. Guided by the anti-QS activity, a novel active compound was isolated and purified from the extract and was identified as 2,3-dimethoxycinnamic acid (2,3-DCA) through spectral data analysis. At a concentration of 150 μg/mL, 2,3-DCA exhibited robust inhibitory effects on three QS-regulated traits of C. violaceum CV026: violacein production, swarming motility, and biofilm formation, with inhibition rates of 73.9%, 65.9%, and 37.8%, respectively. The quantitative reverse transcription polymerase chain reaction results indicated that 2,3-DCA can disrupt the QS system in C. violaceum CV026 by effectively suppressing the expression of QS-related genes, including cviR, vioA, vioB, and vioE. Molecular docking analysis revealed that 2,3-DCA hinders the QS system by competitively binding to the same binding pocket on the CviR receptor as the natural signal molecule N-hexanoyl-L-homoserine lactone. Collectively, these findings suggest that 2,3-DCA exhibits promising potential as an inhibitor of QS systems, providing a potential solution to the emerging problem of bacterial resistance.

Enclosed courtyards with partially ground floor pilotis represent a prevalent architectural spatial configuration in hot-humid regions, where the shaded outdoor areas serve as frequently utilized spaces for heat avoidance and rest. This study employed a combined approach of ENVI-met simulations and field measurements to investigate the wind and thermal environment in the shaded areas of courtyards under 40 different pilotis width configurations. The Comfortable Wind Zone Ratio (CWZR) and Physiological Equivalent Temperature (PET) were used as primary evaluation metrics to systematically investigate the influence of varying inlet/outlet width ratios in building pilotis on the wind-thermal environment within courtyard-shaded zones. The results demonstrate that: (1) Under a fixed outlet size, enlarging the inlet significantly enhances the CWZR in the shaded area, with a 28.66% difference observed between inlet sizes of L/4 and L. In contrast, under a fixed inlet size, expanding the outlet has a negligible effect on CWZR improvement. (2) Under a fixed outlet size, increasing the inlet width substantially reduces PET in the shaded zone, showing a 2.46 °C difference between inlet sizes of L/4 and L. Conversely, under a fixed inlet size, widening the outlet has a minimal impact on PET reduction. (3) A negative correlation exists between CWZR and PET in the shaded area, indicating that an increase in CWZR leads to a decrease in PET values. The findings provide bioclimatically quantified guidelines for the spatial design of courtyard pilotis in hot-humid regions, offering practical insights for optimizing thermal comfort in shaded outdoor environments.

The nuclear pore complex (NPC) is the sole and selective gateway for nuclear transport, and its dysfunction has been associated with many diseases. The metazoan NPC subcomplex RanBP2, which consists of RanBP2 (Nup358), RanGAP1-SUMO1, and Ubc9, regulates the assembly and function of the NPC. The roles of immune signaling in regulation of NPC remain poorly understood. Here, we show that in human and murine T cells, following T-cell receptor (TCR ) stimulation, protein kinase C-θ (PKC-θ) directly phosphorylates RanGAP1 to facilitate RanBP2 subcomplex assembly and nuclear import and, thus, the nuclear translocation of AP-1 transcription factor. Mechanistically, TCR stimulation induces the translocation of activated PKC-θ to the NPC, where it interacts with and phosphorylates RanGAP1 on Ser 504 and Ser 506 . RanGAP1 phosphorylation increases its binding affinity for Ubc9, thereby promoting sumoylation of RanGAP1 and, finally, assembly of the RanBP2 subcomplex. Our findings reveal an unexpected role of PKC-θ as a direct regulator of nuclear import and uncover a phosphorylation-dependent sumoylation of RanGAP1, delineating a novel link between TCR signaling and assembly of the RanBP2 NPC subcomplex.