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2,282
result(s) for
"Yamamoto Masahiro"
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Fractional Calculus and Time-Fractional Differential Equations: Revisit and Construction of a Theory
2022
For fractional derivatives and time-fractional differential equations, we construct a framework on the basis of operator theory in fractional Sobolev spaces. Our framework provides a feasible extension of the classical Caputo and the Riemann–Liouville derivatives within Sobolev spaces of fractional orders, including negative ones. Our approach enables a unified treatment for fractional calculus and time-fractional differential equations. We formulate initial value problems for fractional ordinary differential equations and initial boundary value problems for fractional partial differential equations to prove well-posedness and other properties.
Journal Article
Innate, adaptive, and cell-autonomous immunity against Toxoplasma gondii infection
2019
Hosts have been fighting pathogens throughout the evolution of all infectious diseases.
Toxoplasma gondii
is one of the most common infectious agents in humans but causes only opportunistic infection in healthy individuals. Similar to antimicrobial immunity against other organisms, the immune response against
T. gondii
activates innate immunity and in turn induces acquired immune responses. After activation of acquired immunity, host immune cells robustly produce the proinflammatory cytokine interferon-γ (IFN-γ), which activates a set of IFN-γ-inducible proteins, including GTPases. IFN-inducible GTPases are essential for cell-autonomous immunity and are specialized for effective clearance and growth inhibition of
T. gondii
by accumulating in parasitophorous vacuole membranes. Recent studies suggest that the cell-autonomous immune response plays a protective role in host defense against not only
T. gondii
but also various intracellular bacteria. Moreover, the negative regulatory mechanisms of such strong immune responses are also important for host survival after infection. In this review, we will discuss in detail recent advances in the understanding of host defenses against
T. gondii
and the roles played by cell-autonomous immune responses.
Toxoplasmosis: Insights into immunity
Researchers are extensively studying immune responses to the single-celled parasite
Toxoplasma gondii
, which infects around one-third of humans, often harmlessly, but can cause life-threatening toxoplasmosis infections in patients with weakened immune systems. Masahiro Yamamoto and Miwa Sasai at Osaka University in Japan review recent advances in understanding the interactions between the immune system and the parasite. They consider non-specific ‘innate’ immune responses and also the ‘acquired’ responses that target specific parts of the parasite, referred to as antigens. Methods that selectively switch off genes in mice are revealing details presumed to also be relevant for humans. Significant molecules, molecular signaling pathways and immune-regulating processes are being identified. Recent studies suggest cell-autonomous immunity, the ability of host cells to defend themselves against attack, plays a significant role in fighting
Toxoplasma gondii
infection.
Journal Article
LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury
2020
Sensing and clearance of dysfunctional lysosomes is critical for cellular homeostasis. Here we show that transcription factor EB (TFEB)—a master transcriptional regulator of lysosomal biogenesis and autophagy—is activated during the lysosomal damage response, and its activation is dependent on the function of the ATG conjugation system, which mediates LC3 lipidation. In addition, lysosomal damage triggers LC3 recruitment on lysosomes, where lipidated LC3 interacts with the lysosomal calcium channel TRPML1, facilitating calcium efflux essential for TFEB activation. Furthermore, we demonstrate the presence and importance of this TFEB activation mechanism in kidneys in a mouse model of oxalate nephropathy accompanying lysosomal damage. A proximal tubule-specific TFEB-knockout mouse exhibited progression of kidney injury induced by oxalate crystals. Together, our results reveal unexpected mechanisms of TFEB activation by LC3 lipidation and their physiological relevance during the lysosomal damage response.Nakamura et al. find that the master transcriptional regulator of lysosomal biogenesis and autophagy TFEB is activated following LC3 lipidation during lysosomal damage and show the importance of this mechanism during kidney injury.
Journal Article
Osteoclast fusion and bone loss are restricted by interferon inducible guanylate binding proteins
2021
Chronic inflammation during many diseases is associated with bone loss. While interferons (IFNs) are often inhibitory to osteoclast formation, the complex role that IFN and interferon-stimulated genes (ISGs) play in osteoimmunology during inflammatory diseases is still poorly understood. We show that mice deficient in IFN signaling components including IFN alpha and beta receptor 1 (IFNAR1), interferon regulatory factor 1 (IRF1), IRF9, and STAT1 each have reduced bone density and increased osteoclastogenesis compared to wild type mice. The IFN-inducible guanylate-binding proteins (GBPs) on mouse chromosome 3 (GBP1, GBP2, GBP3, GBP5, GBP7) are required to negatively regulate age-associated bone loss and osteoclastogenesis. Mechanistically, GBP2 and GBP5 both negatively regulate in vitro osteoclast differentiation, and loss of GBP5, but not GBP2, results in greater age-associated bone loss in mice. Moreover, mice deficient in GBP5 or chromosome 3 GBPs have greater LPS-mediated inflammatory bone loss compared to wild type mice. Overall, we find that GBP5 contributes to restricting age-associated and inflammation-induced bone loss by negatively regulating osteoclastogenesis.
The innate immune system and inflammation modulate bone homeostasis through complex regulation of bone remodelling cells including osteoblasts and osteoclasts. Here, the authors show that the type I interferon pathway and guanylate binding proteins functionally limit bone loss by inhibiting osteoclast functions.
Journal Article
The General Fractional Derivative and Related Fractional Differential Equations
2020
In this survey paper, we start with a discussion of the general fractional derivative (GFD) introduced by A. Kochubei in his recent publications. In particular, a connection of this derivative to the corresponding fractional integral and the Sonine relation for their kernels are presented. Then we consider some fractional ordinary differential equations (ODEs) with the GFD including the relaxation equation and the growth equation. The main part of the paper is devoted to the fractional partial differential equations (PDEs) with the GFD. We discuss both the Cauchy problems and the initial-boundary-value problems for the time-fractional diffusion equations with the GFD. In the final part of the paper, some results regarding the inverse problems for the differential equations with the GFD are presented.
Journal Article
General time-fractional diffusion equation: some uniqueness and existence results for the initial-boundary-value problems
2016
In this paper, we deal with the initial-boundary-value problems for a general time-fractional diffusion equation which generalizes the single- and the multi-term time-fractional diffusion equations as well as the time-fractional diffusion equation of the distributed order. First, important estimates for the general time-fractional derivatives of the Riemann-Liouville and the Caputo type of a function at its maximum point are derived. These estimates are applied to prove a weak maximum principle for the general time-fractional diffusion equation. As an application of the maximum principle, the uniqueness of both the strong and the weak solutions to the initial-boundary-value problem for this equation with the Dirichlet boundary conditions is established. Finally, the existence of a suitably defined generalized solution to the the initial-boundary-value problem with the homogeneous boundary conditions is proved.
Journal Article
Incidental News Exposure on Social Media: A Campaign Communication Mediation Approach
by
Yamamoto, Masahiro
,
Morey, Alyssa C.
in
Campaigns
,
Communication
,
Information seeking behavior
2019
This study, derived from campaign communication mediation models, examines how incidental news exposure on social media affects political participation. Analysis of two-wave panel data collected before the 2016 US presidential election shows that incidental news exposure on social media is associated with increases in offline and online political participation (1) through online political information seeking and (2) through online political information seeking and online political expression in serial. Interestingly, results show that incidental news exposure on social media also has a direct negative relationship with offline and online political participation. Implications for the political utility of social media are discussed.
Journal Article
Carleman Estimates and Controllability for a Degenerate Structured Population Model
by
Fragnelli Genni
,
Yamamoto Masahiro
in
Applied mathematics
,
Controllability
,
Diffusion coefficient
2021
In this paper we study the null controllability property for a single population model in which the population y depends on time t, space x, age a and size τ. Moreover, the diffusion coefficient k is degenerate at a point of the domain or both extremal points. Our technique is essentially based on Carleman estimates. The τ dependence requires us to modify the weight for the Carleman estimates, and accordingly the proof of the observability inequality. Thanks to this observability inequality we obtain a null controllability result for an intermediate problem and finally for the initial system through suitable cut off functions.
Journal Article
The transcription factor IRF1 and guanylate-binding proteins target activation of the AIM2 inflammasome by Francisella infection
2015
The mechanisms that control activation of the AIM2 inflammasome by cytosolic bacteria are unclear. Kanneganti and colleagues demonstrate that a pathway involving the transcription factor IRF1 is required for the activation of AIM2.
Inflammasomes are critical for mounting host defense against pathogens. The molecular mechanisms that control activation of the AIM2 inflammasome in response to different cytosolic pathogens remain unclear. Here we found that the transcription factor IRF1 was required for activation of the AIM2 inflammasome during infection with the
Francisella tularensis
subspecies
novicida
(
F. novicida
), whereas engagement of the AIM2 inflammasome by mouse cytomegalovirus (MCMV) or transfected double-stranded DNA did not require IRF1. Infection of
F. novicida
detected by the DNA sensor cGAS and its adaptor STING induced type I interferon–dependent expression of IRF1, which drove the expression of guanylate-binding proteins (GBPs); this led to intracellular killing of bacteria and DNA release. Our results reveal a specific requirement for IRF1 and GBPs in the liberation of DNA for sensing by AIM2 depending on the pathogen encountered by the cell.
Journal Article
CRISPR screens identify genes essential for in vivo virulence among proteins of hyperLOPIT-unassigned subcellular localization in Toxoplasma
2024
Toxoplasma gondii is a protozoan parasite that causes severe infection in immunocompromised patients or newborns. Toxoplasma possesses more than 8,000 genes; however, the genes essential for in vivo virulence were not fully identified. The apicomplexan parasites, including Toxoplasma , developed unique organelles that do not exist in other model organisms; thus, determining the subcellular location of parasite proteins is important for understanding their functions. Here, we used in vivo genetic screens that enabled us to investigate hundreds of genes in Toxoplasma during mouse infection. We screened approximately 600 parasite proteins with previously unknown subcellular localizations. We identified many novel genes that confer parasite virulence in mice. Among the top hits, we characterized two genes essential for in vivo virulence, TgGTPase and TgRimM, which are widely conserved in the phylum Apicomplexa. Our findings will contribute to understanding how apicomplexans adapt to the host environment and cause disease.
Journal Article