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"Yasaka, Koichiro"
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Deep learning and artificial intelligence in radiology: Current applications and future directions
2018
Newer imaging modalities such as CT and MR can provide more detailed information with thinner images and/or multiple series of images, and the time required to collect these images is shorter than before.
[...]the number of images collected in each examination is increasing, whereas the number of radiologists who interpret these images is not.
[...]deep learning models can also be used to alert radiologists and physicians to patients who require urgent treatment, as in the application described by Taylor and colleagues in the detection of pneumothorax [2].
[...]deep learning models trained to predict histopathological findings based on noninvasive images, such as the models described above that use MR to stage liver fibrosis [7], may help in reducing the risk of complications from invasive biopsy.
[...]although a trained model may exhibit high performance in one task such as diagnosis of pneumonia, deep learning in its current forms cannot replace the radiologist’s role in detecting incidental findings such as asymptomatic tumors.
Journal Article
Prediction of bone mineral density from computed tomography: application of deep learning with a convolutional neural network
by
Yasaka Koichiro
,
Kiryu Shigeru
,
Akai Hiroyuki
in
Abdomen
,
Artificial intelligence
,
Artificial neural networks
2020
ObjectivesTo investigate whether a deep learning model can predict the bone mineral density (BMD) of lumbar vertebrae from unenhanced abdominal computed tomography (CT) images.MethodsIn this Institutional Review Board–approved retrospective study, patients who received both unenhanced CT examinations and dual-energy X-ray absorptiometry (DXA) of the lumbar vertebrae, in two institutions (1 and 2), were included. Supervised deep learning was employed to obtain a convolutional neural network (CNN) model using axial CT images, including the lumbar vertebrae as input data and BMD values obtained with DXA as reference data. For this purpose, 1665 CT images from 183 patients in institution 1, which were augmented to 99,900 (= 1665 × 60) images (noise adding, parallel shift and rotation were performed), were used. Internal (by using data of 45 other patients in institution 1) and external validations (by using data of 50 patients in institution 2) were performed to evaluate the performance of the trained CNN model. Correlations and diagnostic performances were evaluated with Pearson’s correlation coefficient (r) and area under the receiver operating characteristic curve (AUC), respectively.ResultsThe estimated BMD values, according to the CNN model (BMDCNN), were significantly correlated with the BMD values obtained with DXA (r = 0.852 (p < 0.001) and 0.840 (p < 0.001) for the internal and external validation datasets, respectively). Using BMDCNN, osteoporosis was diagnosed with AUCs of 0.965 and 0.970 for the internal and external validation datasets, respectively.ConclusionsUsing deep learning, the BMD of lumbar vertebrae could be predicted from unenhanced abdominal CT images.Key Points• By applying a deep learning technique, the bone mineral density (BMD) of lumbar vertebrae can be estimated from unenhanced abdominal CT images.• A strong correlation was observed between the estimated BMD and the BMD obtained with DXA.• By using the estimated BMD, osteoporosis could be diagnosed with high performance.
Journal Article
Deep learning with convolutional neural network in radiology
by
Akai, Hiroyuki
,
Kiryu, Shigeru
,
Kunimatsu, Akira
in
Artificial neural networks
,
Data processing
,
Deep learning
2018
Deep learning with a convolutional neural network (CNN) is gaining attention recently for its high performance in image recognition. Images themselves can be utilized in a learning process with this technique, and feature extraction in advance of the learning process is not required. Important features can be automatically learned. Thanks to the development of hardware and software in addition to techniques regarding deep learning, application of this technique to radiological images for predicting clinically useful information, such as the detection and the evaluation of lesions, etc., are beginning to be investigated. This article illustrates basic technical knowledge regarding deep learning with CNNs along the actual course (collecting data, implementing CNNs, and training and testing phases). Pitfalls regarding this technique and how to manage them are also illustrated. We also described some advanced topics of deep learning, results of recent clinical studies, and the future directions of clinical application of deep learning techniques.
Journal Article
Automated classification of brain MRI reports using fine-tuned large language models
by
Fujita, Nana
,
Fujiwara, Shin
,
Abe, Osamu
in
Accuracy
,
Brain
,
Brain Neoplasms - classification
2024
Purpose
This study aimed to investigate the efficacy of fine-tuned large language models (LLM) in classifying brain MRI reports into pretreatment, posttreatment, and nontumor cases.
Methods
This retrospective study included 759, 284, and 164 brain MRI reports for training, validation, and test dataset. Radiologists stratified the reports into three groups: nontumor (group 1), posttreatment tumor (group 2), and pretreatment tumor (group 3) cases. A pretrained Bidirectional Encoder Representations from Transformers Japanese model was fine-tuned using the training dataset and evaluated on the validation dataset. The model which demonstrated the highest accuracy on the validation dataset was selected as the final model. Two additional radiologists were involved in classifying reports in the test datasets for the three groups. The model’s performance on test dataset was compared to that of two radiologists.
Results
The fine-tuned LLM attained an overall accuracy of 0.970 (95% CI: 0.930–0.990). The model’s sensitivity for group 1/2/3 was 1.000/0.864/0.978. The model’s specificity for group1/2/3 was 0.991/0.993/0.958. No statistically significant differences were found in terms of accuracy, sensitivity, and specificity between the LLM and human readers (
p
≥ 0.371). The LLM completed the classification task approximately 20–26-fold faster than the radiologists. The area under the receiver operating characteristic curve for discriminating groups 2 and 3 from group 1 was 0.994 (95% CI: 0.982–1.000) and for discriminating group 3 from groups 1 and 2 was 0.992 (95% CI: 0.982–1.000).
Conclusion
Fine-tuned LLM demonstrated a comparable performance with radiologists in classifying brain MRI reports, while requiring substantially less time.
Journal Article
Deep learning for staging liver fibrosis on CT: a pilot study
by
Akai, Hiroyuki
,
Kiryu, Shigeru
,
Kunimatsu, Akira
in
Artificial intelligence
,
Artificial neural networks
,
Bile
2018
ObjectivesTo investigate whether liver fibrosis can be staged by deep learning techniques based on CT images.MethodsThis clinical retrospective study, approved by our institutional review board, included 496 CT examinations of 286 patients who underwent dynamic contrast-enhanced CT for evaluations of the liver and for whom histopathological information regarding liver fibrosis stage was available. The 396 portal phase images with age and sex data of patients (F0/F1/F2/F3/F4 = 113/36/56/66/125) were used for training a deep convolutional neural network (DCNN); the data for the other 100 (F0/F1/F2/F3/F4 = 29/9/14/16/32) were utilised for testing the trained network, with the histopathological fibrosis stage used as reference. To improve robustness, additional images for training data were generated by rotating or parallel shifting the images, or adding Gaussian noise. Supervised training was used to minimise the difference between the liver fibrosis stage and the fibrosis score obtained from deep learning based on CT images (FDLCT score) output by the model. Testing data were input into the trained DCNNs to evaluate their performance.ResultsThe FDLCT scores showed a significant correlation with liver fibrosis stage (Spearman's correlation coefficient = 0.48, p < 0.001). The areas under the receiver operating characteristic curves (with 95% confidence intervals) for diagnosing significant fibrosis (≥ F2), advanced fibrosis (≥ F3) and cirrhosis (F4) by using FDLCT scores were 0.74 (0.64–0.85), 0.76 (0.66–0.85) and 0.73 (0.62–0.84), respectively.ConclusionsLiver fibrosis can be staged by using a deep learning model based on CT images, with moderate performance.Key Points• Liver fibrosis can be staged by a deep learning model based on magnified CT images including the liver surface, with moderate performance.• Scores from a trained deep learning model showed moderate correlation with histopathological liver fibrosis staging.• Further improvement are necessary before utilisation in clinical settings.
Journal Article
Fine-Tuned Large Language Model for Extracting Patients on Pretreatment for Lung Cancer from a Picture Archiving and Communication System Based on Radiological Reports
2025
This study aimed to investigate the performance of a fine-tuned large language model (LLM) in extracting patients on pretreatment for lung cancer from picture archiving and communication systems (PACS) and comparing it with that of radiologists. Patients whose radiological reports contained the term lung cancer (3111 for training, 124 for validation, and 288 for test) were included in this retrospective study. Based on clinical indication and diagnosis sections of the radiological report (used as input data), they were classified into four groups (used as reference data): group 0 (no lung cancer), group 1 (pretreatment lung cancer present), group 2 (after treatment for lung cancer), and group 3 (planning radiation therapy). Using the training and validation datasets, fine-tuning of the pretrained LLM was conducted ten times. Due to group imbalance, group 2 data were undersampled in the training. The performance of the best-performing model in the validation dataset was assessed in the independent test dataset. For testing purposes, two other radiologists (readers 1 and 2) were also involved in classifying radiological reports. The overall accuracy of the fine-tuned LLM, reader 1, and reader 2 was 0.983, 0.969, and 0.969, respectively. The sensitivity for differentiating group 0/1/2/3 by LLM, reader 1, and reader 2 was 1.000/0.948/0.991/1.000, 0.750/0.879/0.996/1.000, and 1.000/0.931/0.978/1.000, respectively. The time required for classification by LLM, reader 1, and reader 2 was 46s/2539s/1538s, respectively. Fine-tuned LLM effectively extracted patients on pretreatment for lung cancer from PACS with comparable performance to radiologists in a shorter time.
Journal Article
Impact of rapid iodine contrast agent infusion on tracheal diameter and lung volume in CT pulmonary angiography measured with deep learning-based algorithm
2024
PurposeTo compare computed tomography (CT) pulmonary angiography and unenhanced CT to determine the effect of rapid iodine contrast agent infusion on tracheal diameter and lung volume.Material and methodsThis retrospective study included 101 patients who underwent CT pulmonary angiography and unenhanced CT, for which the time interval between them was within 365 days. CT pulmonary angiography was scanned 20 s after starting the contrast agent injection at the end-inspiratory level. Commercial software, which was developed based on deep learning technique, was used to segment the lung, and its volume was automatically evaluated. The tracheal diameter at the thoracic inlet level was also measured. Then, the ratios for the CT pulmonary angiography to unenhanced CT of the tracheal diameter (TDPAU) and both lung volumes (BLVPAU) were calculated.ResultsTracheal diameter and both lung volumes were significantly smaller in CT pulmonary angiography (17.2 ± 2.6 mm and 3668 ± 1068 ml, respectively) than those in unenhanced CT (17.7 ± 2.5 mm and 3887 ± 1086 ml, respectively) (p < 0.001 for both). A statistically significant correlation was found between TDPAU and BLVPAU with a correlation coefficient of 0.451 (95% confidence interval, 0.280–0.594) (p < 0.001). No factor showed a significant association with TDPAU. The type of contrast agent had a significant association for BLVPAU (p = 0.042).ConclusionsRapid infusion of iodine contrast agent reduced the tracheal diameter and both lung volumes in CT pulmonary angiography, which was scanned at end-inspiratory level, compared with those in unenhanced CT.
Journal Article
The Fine-Tuned Large Language Model for Extracting the Progressive Bone Metastasis from Unstructured Radiology Reports
2025
Early detection of patients with impending bone metastasis is crucial for prognosis improvement. This study aimed to investigate the feasibility of a fine-tuned, locally run large language model (LLM) in extracting patients with bone metastasis in unstructured Japanese radiology report and to compare its performance with manual annotation. This retrospective study included patients with “metastasis” in radiological reports (April 2018–January 2019, August–May 2022, and April–December 2023 for training, validation, and test datasets of 9559, 1498, and 7399 patients, respectively). Radiologists reviewed the clinical indication and diagnosis sections of the radiological report (used as input data) and classified them into groups 0 (no bone metastasis), 1 (progressive bone metastasis), and 2 (stable or decreased bone metastasis). The data for group 0 was under-sampled in training and test datasets due to group imbalance. The best-performing model from the validation set was subsequently tested using the testing dataset. Two additional radiologists (readers 1 and 2) were involved in classifying radiological reports within the test dataset for testing purposes. The fine-tuned LLM, reader 1, and reader 2 demonstrated an accuracy of 0.979, 0.996, and 0.993, sensitivity for groups 0/1/2 of 0.988/0.947/0.943, 1.000/1.000/0.966, and 1.000/0.982/0.954, and time required for classification (s) of 105, 2312, and 3094 in under-sampled test dataset (n = 711), respectively. Fine-tuned LLM extracted patients with bone metastasis, demonstrating satisfactory performance that was comparable to or slightly lower than manual annotation by radiologists in a noticeably shorter time.
Journal Article
Deep learning reconstruction for improving the visualization of acute brain infarct on computed tomography
2024
Purpose
This study aimed to investigate the impact of deep learning reconstruction (DLR) on acute infarct depiction compared with hybrid iterative reconstruction (Hybrid IR).
Methods
This retrospective study included 29 (75.8 ± 13.2 years, 20 males) and 26 (64.4 ± 12.4 years, 18 males) patients with and without acute infarction, respectively. Unenhanced head CT images were reconstructed with DLR and Hybrid IR. In qualitative analyses, three readers evaluated the conspicuity of lesions based on five regions and image quality. A radiologist placed regions of interest on the lateral ventricle, putamen, and white matter in quantitative analyses, and the standard deviation of CT attenuation (i.e., quantitative image noise) was recorded.
Results
Conspicuity of acute infarct in DLR was superior to that in Hybrid IR, and a statistically significant difference was observed for two readers (
p
≤ 0.038). Conspicuity of acute infarct with time from onset to CT imaging at < 24 h in DLR was significantly improved compared with Hybrid IR for all readers (
p
≤ 0.020). Image noise in DLR was significantly reduced compared with Hybrid IR with both the qualitative and quantitative analyses (
p
< 0.001 for all).
Conclusion
DLR in head CT helped improve acute infarct depiction, especially those with time from onset to CT imaging at < 24 h.
Journal Article
Improving detection performance of hepatocellular carcinoma and interobserver agreement for liver imaging reporting and data system on CT using deep learning reconstruction
by
Kaiume, Masafumi
,
Abe, Osamu
,
Okimoto, Naomasa
in
Categories
,
Computed tomography
,
Data systems
2023
PurposeThis study aimed to compare the hepatocellular carcinoma (HCC) detection performance, interobserver agreement for Liver Imaging Reporting and Data System (LI-RADS) categories, and image quality between deep learning reconstruction (DLR) and conventional hybrid iterative reconstruction (Hybrid IR) in CT.MethodsThis retrospective study included patients who underwent abdominal dynamic contrast-enhanced CT between October 2021 and March 2022. Arterial, portal, and delayed phase images were reconstructed using DLR and Hybrid IR. Two blinded readers independently read the image sets with detecting HCCs, scoring LI-RADS, and evaluating image quality.ResultsA total of 26 patients with HCC (mean age, 73 years ± 12.3) and 23 patients without HCC (mean age, 66 years ± 14.7) were included. The figures of merit (FOM) for the jackknife alternative free-response receiver operating characteristic analysis in detecting HCC averaged for the readers were 0.925 (reader 1, 0.937; reader 2, 0.913) in DLR and 0.878 (reader 1, 0.904; reader 2, 0.851) in Hybrid IR, and the FOM in DLR were significantly higher than that in Hybrid IR (p = 0.038). The interobserver agreement (Cohen’s weighted kappa statistics) for LI-RADS categories was moderate for DLR (0.595; 95% CI, 0.585–0.605) and significantly superior to Hybrid IR (0.568; 95% CI, 0.553–0.582). According to both readers, DLR was significantly superior to Hybrid IR in terms of image quality (p ≤ 0.021).ConclusionDLR improved HCC detection, interobserver agreement for LI-RADS categories, and image quality in evaluations of HCC compared to Hybrid IR in abdominal dynamic contrast-enhanced CT.
Journal Article