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5 result(s) for "Yashiro, Tomoe"
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Pathophysiological Roles of Neuro-Immune Interactions between Enteric Neurons and Mucosal Mast Cells in the Gut of Food Allergy Mice
Recently, the involvement of the nervous system in the pathology of allergic diseases has attracted increasing interest. However, the precise pathophysiological role of enteric neurons in food allergies has not been elucidated. We report the presence of functional high-affinity IgE receptors (FcεRIs) in enteric neurons. FcεRI immunoreactivities were observed in approximately 70% of cholinergic myenteric neurons from choline acetyltransferase-eGFP mice. Furthermore, stimulation by IgE-antigen elevated intracellular Ca2+ concentration in isolated myenteric neurons from normal mice, suggesting that FcεRIs are capable of activating myenteric neurons. Additionally, the morphological investigation revealed that the majority of mucosal mast cells were in close proximity to enteric nerve fibers in the colonic mucosa of food allergy mice. Next, using a newly developed coculture system of isolated myenteric neurons and mucosal-type bone-marrow-derived mast cells (mBMMCs) with a calcium imaging system, we demonstrated that the stimulation of isolated myenteric neurons by veratridine caused the activation of mBMMCs, which was suppressed by the adenosine A3 receptor antagonist MRE 3008F20. Moreover, the expression of the adenosine A3 receptor gene was detected in mBMMCs. Therefore, in conclusion, it is suggested that, through interaction with mucosal mast cells, IgE-antigen-activated myenteric neurons play a pathological role in further exacerbating the pathology of food allergy.
The Nonhydrostatic ICosahedral Atmospheric Model for CMIP6 HighResMIP simulations (NICAM16-S): experimental design, model description, and impacts of model updates
The Nonhydrostatic ICosahedral Atmospheric Model (NICAM), a global model with an icosahedral grid system, has been under development for nearly two decades. This paper describes NICAM16-S, the latest stable version of NICAM (NICAM.16), modified for the Coupled Model Intercomparison Project Phase 6, High Resolution Model Intercomparison Project (HighResMIP). Major updates of NICAM.12, a previous version used for climate simulations, included updates of the cloud microphysics scheme and land surface model, introduction of natural and anthropogenic aerosols and a subgrid-scale orographic gravity wave drag scheme, and improvement of the coupling between the cloud microphysics and the radiation schemes. External forcings were updated to follow the protocol of the HighResMIP. A series of short-term sensitivity experiments were performed to determine and understand the impacts of these various model updates on the simulated mean states. The NICAM16-S simulations demonstrated improvements in the ice water content, high cloud amount, surface air temperature over the Arctic region, location and strength of zonal mean subtropical jet, and shortwave radiation over Africa and South Asia. Some long-standing biases, such as the double intertropical convergence zone and smaller low cloud amount, still exist or are even worse in some cases, suggesting further necessity for understanding their mechanisms, upgrading schemes and parameter settings, and enhancing horizontal and vertical resolutions.
Large Ensemble Simulation for Investigating Predictability of Precursor Vortices of Typhoon Faxai in 2019 With a 14‐km Mesh Global Nonhydrostatic Atmospheric Model
Typhoon Faxai hit Japan in 2019 and severely damaged the Tokyo metropolitan area. To mitigate such damages, a good track forecast is necessary even before the typhoon formation. To investigate the predictability of the genesis and movement of a precursor vortex and its relationship with the synoptic‐scale flow, 100‐member ensemble simulations of Typhoon Faxai were performed using a 14‐km mesh global nonhydrostatic atmospheric model, which started from 16 different initial days (i.e., 1,600 members in total). The results show that the model could predict an enhanced risk of a Faxai‐like vortex heading toward Japan 2 weeks before landfall, which was up to 70%. The reason for the enhancement was a rapid increase in the members reproducing a precursor vortex from 15 to 12 days before landfall in Japan. In addition, the upper‐tropospheric vortex played an essential role in the track simulation of Faxai. Plain Language Summary Tropical cyclones severely damage coastal regions yearly. Typhoon Faxai hit Japan in 2019 and severely damaged buildings, power grids, and cell phone networks in the Tokyo metropolitan area. To mitigate such damages, better track forecast is necessary even from the timing before typhoon formation. A large ensemble member (1,600‐member in total) and high‐resolution (14‐km) simulation was performed to investigate the genesis and movement of the precursor vortex of Faxai in 2019 and its relationship with the synoptic‐scale environmental flow using a global nonhydrostatic atmospheric model on the Supercomputer Fugaku. The results show the model could predict an enhanced risk of a Faxai‐like vortex heading toward Japan 2 weeks before landfall. A reason for the enhancement was a rapid increase in the members reproducing a precursor vortex from 15 to 12 days before landfall in Japan. In addition, the upper‐tropospheric vortex played an essential role in the movement of the Faxai‐like vortex. Key Points A 1,600‐member ensemble simulation in total for Typhoon Faxai (2019) was performed using a 14‐km mesh nonhydrostatic atmospheric model The model successfully predicts the risk of Faxai's landfall in Japan 2 weeks in advance Reproducibilities of the precursor vortex and upper‐tropospheric vortex yield good prediction of the formation and track of Faxai
How Can We Improve the Seamless Representation of Climatological Statistics and Weather Toward Reliable Global K‐Scale Climate Simulations?
Toward the achievement of reliable global kilometer‐scale (k‐scale) climate simulations, we improve the Nonhydrostatic ICosahedral Atmospheric Model (NICAM) by focusing on moist physical processes. A goal of the model improvement is to establish a configuration that can simulate realistic fields seamlessly from the daily‐scale variability to the climatological statistics. Referring to the two representative configurations of the present NICAM, each of which has been used for climate‐scale and sub‐seasonal‐scale experiments, we try to find the appropriate partitioning of fast/local and slow/global‐scale circulations. In a series of sensitivity experiments at 14‐km horizontal resolution, we test (a) the tuning of terminal velocities of rain, snow, and cloud ice, (b) the implementation of turbulent diffusion by the Leonard term, and (c) enhanced vertical resolution. These tests yield reasonable convection triggering and convection‐induced tropospheric moistening, and result in better performance than in previous NICAM climate simulations. In the mean state, double Intertropical Convergence Zone bias disappears, and the zonal contrast of equatorial precipitation, top‐of‐atmosphere radiation balance, vertical temperature profile, and position/strength of subtropical jet are reproduced dramatically better. Variability such as equatorial waves and the Madden–Julian oscillation (MJO) is spontaneously realized with appropriate spectral power balance, and the Asian summer monsoon, boreal‐summer MJO, and tropical cyclone (TC) activities are more realistically simulated especially around the western Pacific. Meanwhile, biases still exist in the representation of low‐cloud fraction, TC intensity, and precipitation diurnal cycle, suggesting that both higher spatial resolutions and further model development are warranted. Plain Language Summary In the near future, increasing computational power will make it possible to perform a global kilometer‐scale “cloud‐resolving” model (GCRM) simulation on the climate time scale, which is expected to reduce the uncertainty of cloud‐related processes in the climate system. In this sense, it is important to make GCRMs more reliable tools in the evaluation and prediction of the variabilities over a wide range of spatio‐temporal scales. With this perspective, we improve a Japanese GCRM, the Nonhydrostatic Atmospheric Icosahedral Model (NICAM), to achieve the realistic representation of both weather phenomena and climatological features in long‐term simulations. We revise the NICAM by the reconsideration of cloud microphysics properties, the implementation of diffusion processes around strong convection cores, and increased vertical layers. These revisions lead to the substantial improvements in the climatological mean precipitation distributions, radiative energy balance at the top of the atmosphere, westerly jets in the mid‐latitude, and temperature fields. We also find that weather phenomena such as the Asian summer monsoon and tropical cyclone (TC) genesis are simulated more realistically. We expect that, in addition to the above model improvements, kilometer‐scale horizontal resolutions can resolve a part of remaining issues of the representation of TC intensity and precipitation diurnal cycle. Key Points We improve a global nonhydrostatic atmospheric model focusing on resolution‐independent errors that can exist even in k‐scale climate runs Key improvements are retuning of cloud microphysics properties, consideration of grid‐scale turbulent mixing, and increased vertical layers Biases in mean rainfall, radiation balance, and circulation as well as weather (monsoon, Madden–Julian oscillation, equatorial wave, tropical cyclone) are reduced
Outcomes and challenges of global high-resolution non-hydrostatic atmospheric simulations using the K computer
This article reviews the major outcomes of a 5-year (2011–2016) project using the K computer to perform global numerical atmospheric simulations based on the non-hydrostatic icosahedral atmospheric model (NICAM). The K computer was made available to the public in September 2012 and was used as a primary resource for Japan’s Strategic Programs for Innovative Research (SPIRE), an initiative to investigate five strategic research areas; the NICAM project fell under the research area of climate and weather simulation sciences. Combining NICAM with high-performance computing has created new opportunities in three areas of research: (1) higher resolution global simulations that produce more realistic representations of convective systems, (2) multi-member ensemble simulations that are able to perform extended-range forecasts 10–30 days in advance, and (3) multi-decadal simulations for climatology and variability. Before the K computer era, NICAM was used to demonstrate realistic simulations of intra-seasonal oscillations including the Madden-Julian oscillation (MJO), merely as a case study approach. Thanks to the big leap in computational performance of the K computer, we could greatly increase the number of cases of MJO events for numerical simulations, in addition to integrating time and horizontal resolution. We conclude that the high-resolution global non-hydrostatic model, as used in this five-year project, improves the ability to forecast intra-seasonal oscillations and associated tropical cyclogenesis compared with that of the relatively coarser operational models currently in use. The impacts of the sub-kilometer resolution simulation and the multi-decadal simulations using NICAM are also reviewed.