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"Yu, Allen"
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Tuning electrochemically driven surface transformation in atomically flat LaNiO3 thin films for enhanced water electrolysis
2021
Structure–activity relationships built on descriptors of bulk and bulk-terminated surfaces are the basis for the rational design of electrocatalysts. However, electrochemically driven surface transformations complicate the identification of such descriptors. Here we demonstrate how the as-prepared surface composition of (001)-terminated LaNiO
3
epitaxial thin films dictates the surface transformation and the electrocatalytic activity for the oxygen evolution reaction. Specifically, the Ni termination (in the as-prepared state) is considerably more active than the La termination, with overpotential differences of up to 150 mV. A combined electrochemical, spectroscopic and density-functional theory investigation suggests that this activity trend originates from a thermodynamically stable, disordered NiO
2
surface layer that forms during the operation of Ni-terminated surfaces, which is kinetically inaccessible when starting with a La termination. Our work thus demonstrates the tunability of surface transformation pathways by modifying a single atomic layer at the surface and that active surface phases only develop for select as-synthesized surface terminations.
Structure–activity relationships built on descriptors of surfaces can help to design electrocatalysts, but their identification for electrochemically driven surface transformations is challenging. The composition of LaNiO
3
thin film surfaces can now dictate surface transformation and activity of the oxygen evolution reaction.
Journal Article
Monitoring bacterial growth using tunable resistive pulse sensing with a pore-based technique
by
Loo, Jacky F. C
,
Yu, Samuel
,
Chan, Ting-Fung
in
absorbance
,
Bacillus subtilis
,
Bacillus subtilis - cytology
2014
A novel bacterial growth monitoring method using a tunable resistive pulse sensor (TRPS) system is introduced in this study for accurate and sensitive measurement of cell size and cell concentration simultaneously. Two model bacterial strains, Bacillus subtilis str.168 (BSU168) and Escherichia coli str.DH5α (DH5α), were chosen for benchmarking the growth-monitoring performance of the system. Results showed that the technique of TRPS is sensitive and accurate relative to widely used methods, with a lower detection limit of cell concentration measurement of 5 × 10⁵ cells/ml; at the same time, the mean coefficient of variation from TRPS was within 2 %. The growth of BSU168 and DH5α in liquid cultures was studied by TRPS, optical density (OD), and colony plating. Compared to OD measurement, TRPS-measured concentration correlates better with colony plating (R = 0.85 vs. R = 0.72), which is often regarded as the gold standard of cell concentration determination. General agreement was also observed by comparing TRPS-derived cell volume measurements and those determined from microscopy. We have demonstrated that TRPS is a reliable method for bacterial growth monitoring, where the study of both cell volume and cell concentration are needed to provide further details about the physical aspects of cell dynamics in real time.
Journal Article
Assessment of the impacts of climat change on water supply system pipe failures
by
Fan, Xudong
,
Yu, Allen
,
Speitel, Matthew
in
639/166/986
,
704/106/694/2739/2819
,
Climate adaptation
2023
Climate change is projected to have profound impacts on the resilience and sustainability of built infrastructure. This study aims to understand the impacts of climate change on water supply systems and to facilitate adaptive actions. A premium database maintained by the Cleveland Water Division, Cleveland, Ohio, USA is analyzed. It contains 29,621 pipe failure records of 51,832 pipes over the past 30 years, representing one of the largest dataset in current literature. From the database, pipe failure rate models have been developed for water pipes made of different types of materials at different ages. The influence of climate (temperature and precipitation) on fragility of water pipes are obtained. Based on the developed climate-fragility failure rate models, the impacts of climate change on the water systems located in different geographic regions are evaluated by predicting the failure rate and number of failures in the water systems in the next 80 years (2020 to 2100). Climate models are used to predict weather under different climate change scenarios. The results demonstrate that the impacts of climate change on water supply system are likely complicated and are dependent upon factors such as the geographic location, pipe material, pipe age, and maintenance strategies. Water pipes in the cold regions may experience fewer number breaks due to the warmer weather and less severe winter, whereas those located in the hot regions may experience more failures associated with more corrosion. Different pipe replacement strategies are compared, which demonstrate the importance of considering the aging of water supply system in future maintenance decisions. This study enriches current understandings on the impacts of climate change on the water systems. The results will help water utilities to design climate change adaptation strategies.
Journal Article
Primary blast wave protection in combat helmet design: A historical comparison between present day and World War I
by
Bass, Cameron R.
,
Op ‘t Eynde, Joost
,
Yu, Allen W.
in
Armed forces
,
Attenuation
,
Biology and Life Sciences
2020
Since World War I, helmets have been used to protect the head in warfare, designed primarily for protection against artillery shrapnel. More recently, helmet requirements have included ballistic and blunt trauma protection, but neurotrauma from primary blast has never been a key concern in helmet design. Only in recent years has the threat of direct blast wave impingement on the head-separate from penetrating trauma-been appreciated. This study compares the blast protective effect of historical (World War I) and current combat helmets, against each other and 'no helmet' or bare head, for realistic shock wave impingement on the helmet crown. Helmets included World War I variants from the United Kingdom/United States (Brodie), France (Adrian), Germany (Stahlhelm), and a current United States combat variant (Advanced Combat Helmet). Helmets were mounted on a dummy head and neck and aligned along the crown of the head with a cylindrical shock tube to simulate an overhead blast. Primary blast waves of different magnitudes were generated based on estimated blast conditions from historical shells. Peak reflected overpressure at the open end of the blast tube was compared to peak overpressure measured at several head locations. All helmets provided significant pressure attenuation compared to the no helmet case. The modern variant did not provide more pressure attenuation than the historical helmets, and some historical helmets performed better at certain measurement locations. The study demonstrates that both historical and current helmets have some primary blast protective capabilities, and that simple design features may improve these capabilities for future helmet systems.
Journal Article
MaTAR25 lncRNA regulates the Tensin1 gene to impact breast cancer progression
2020
Misregulation of long non-coding RNA (lncRNA) genes has been linked to a wide variety of cancer types. Here we report on
Mammary Tumor Associated RNA 25
(
MaTAR25
), a nuclear enriched and chromatin associated lncRNA that plays a role in mammary tumor cell proliferation, migration, and invasion, both in vitro and in vivo.
MaTAR25
functions by interacting with purine rich element binding protein B (PURB), and associating with a major downstream target gene
Tensin1
(
Tns1
) to regulate its expression in
trans
. The Tns1 protein product is a critical component of focal adhesions linking signaling between the extracellular matrix and the actin cytoskeleton. Knockout of
MaTAR25
results in down-regulation of
Tns1
leading to a reorganization of the actin cytoskeleton, and a reduction of focal adhesions and microvilli. We identify
LINC01271 as
the human ortholog of
MaTAR25
, and importantly, increased expression of
LINC01271
is associated with poor patient prognosis and metastasis. Our findings demonstrate that
LINC01271
represents a potential therapeutic target to alter breast cancer progression.
A group of long non-coding RNAs (lncRNAs),
Mammary Tumor Associated RNA
s
1-30
(
MaTARs
1-30
), are differentially expressed between mammary tumor cells and normal mammary epithelial cells. Here the authors report that
MaTAR25
plays a role in breast cancer cell proliferation, migration and invasion by regulating the expression of the
Tensin1
gene in
trans
.
Journal Article
Wernicke Encephalopathy After Bariatric Surgery: a Literature Review
2023
Wernicke encephalopathy (WE) is an acute neurological disorder classically characterized by ataxia, ophthalmoplegia, and altered mental status. This is caused by thiamine deficiency and is usually seen in malnourished populations. However, with the advent and rise of bariatric surgery in the last 50 years, WE has become an increasingly recognized and potentially deadly complication. Here, we review the populations at risk, clinical presentation, and the incidence of WE in the bariatric surgery population from 1985 to 2023. While the predominant procedure shifts throughout the years, the overall incidence of WE per 100,000 cases for the following procedures are sleeve gastrectomy (1.06), gastric band (1.16), RYGB (4.29), and biliopancreatic diversion with duodenal switch (8.92). Thus, early intervention and post-operative supplementation is recommended to prevent WE.
Journal Article
Matplotlib for Python Developers
by
Yu, Allen
,
Yim, Aldrin
,
Chung, Claire
in
COMPUTERS / Computer Science
,
Information visualization
,
Python (Computer program language)
2018,2024
This book is a useful resource to perform data visualization with Python using the latest version of Matplotlib (2.1.x). You will create a variety of graphs and charts, and embed your plots within different third party tools. By the end of the book, you will build attractive, insightful and powerful visualizations to make better sense of your data.
Actual 5-Year Survival After Cytoreductive Surgery and Hyperthermic Intraperitoneal Chemotherapy for Patients with Peritoneal Carcinomatosis of Colorectal Origin
by
Yu, Allen T.
,
Khajoueinejad, Nazanin
,
Hiotis, Spiros
in
Antineoplastic Combined Chemotherapy Protocols - therapeutic use
,
Chemotherapy
,
Colorectal Neoplasms - pathology
2024
Background
Cytoreductive surgery and heated intraperitoneal chemotherapy (CRS/HIPEC) improves survival compared with chemotherapy alone in patients with peritoneal carcinomatosis (PC) of colorectal (CRC) origin, however, long-term survival data are lacking. We report the actual survival of patients who underwent CRS/HIPEC for PC of CRC origin with a minimum potential 5-year follow-up period to identify factors that preclude long-term survival.
Methods
We performed a retrospective analysis of a prospective database, analyzing patients undergoing CRS/HIPEC for PC of CRC origin from 2007 to 2017. Patients with aborted CRS/HIPEC, postoperative follow-up <90 days, or non-CRC histology were excluded. Overall survival (OS) and disease-free survival (DFS) were measured from date of surgery. Surviving patients with <60 months of follow-up were censored at date of last follow-up.
Results
A total of 103 patients met inclusion criteria and were analyzed. CC score 0–1 was achieved in 89.3% of patients, and median peritoneal cancer index (PCI) was 9 (interquartile range [IQR] 5–17). Ninety-day mortality was 2.9%. The median follow-up of survivors was 88 months. Five-year OS was 36%, and median OS was 42.5 months. Factors independently associated with poor survival included high PCI (PCI = 14–20, hazard ratio [HR] 3.1,
p
= 0.007, and PCI > 20, HR 5.3,
p
≤ 0.001) and incomplete CRS (CC score-2, HR 2.96,
p
= 0.02). Patients with low PCI (0–6) had 5-year OS 60.7%.
Conclusions
Actual 5-year OS was 36% and median OS was 42.5 months. Our study demonstrates that patients with PC from CRC origin with low PCI who undergo complete surgical resection can achieve favorable long-term survival.
Journal Article
Exploring the Role of Circulating Cell-Free RNA in the Development of Colorectal Cancer
by
Tsang, Hin Fung
,
Pei, Xiao Meng
,
Ng, Simon Siu Man
in
Biomarkers
,
Biomarkers, Tumor - genetics
,
Biopsy
2023
Circulating tumor RNA (ctRNA) has recently emerged as a novel and attractive liquid biomarker. CtRNA is capable of providing important information about the expression of a variety of target genes noninvasively, without the need for biopsies, through the use of circulating RNA sequencing. The overexpression of cancer-specific transcripts increases the tumor-derived RNA signal, which overcomes limitations due to low quantities of circulating tumor DNA (ctDNA). The purpose of this work is to present an up-to-date review of current knowledge regarding ctRNAs and their status as biomarkers to address the diagnosis, prognosis, prediction, and drug resistance of colorectal cancer. The final section of the article discusses the practical aspects involved in analyzing plasma ctRNA, including storage and isolation, detection technologies, and their limitations in clinical applications.
Journal Article