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result(s) for
"Yu, Jingjie"
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Evolution of Vegetation Landscape Pattern Dynamics in Ejina Delta, Northwest China—Before and After Ecological Water Diversion
2025
As a typical desert oasis ecosystem in the arid region of Northwest China, the Ejina Delta plays a crucial role in regional ecological security through its vegetation dynamics and landscape pattern changes. Based on Landsat remote sensing images (1990–2020), runoff data, and vegetation landscape surveys, this study investigated the evolutionary patterns and driving mechanisms of vegetation degradation and restoration processes using Normalized Difference Vegetation Index (NDVI), landscape metrics, and Land Use Transition Matrix (LUTM) methods. The following key findings were obtained: (1) Since the implementation of the Ecological Water Diversion Project (EWDP) in the Heihe River Basin (HRB) in 2000, a significant recovery in vegetation coverage has been observed, with an NDVI growth rate of 0.0187/10 yr, which is five times faster than that in the pre-diversion period. The areas of arbor vegetation, shrubland, and grassland increased to 356.8, 689.5, and 2192.6 km2, respectively. However, there is a lag of about five years for the recovery of arbor and shrub compared to grass. (2) The implementation of EWDP has effectively reversed the trend of vegetation degradation, transforming the previously herb-dominated fragmented landscape into a more integrated pattern comprising multiple vegetation types. During the degradation period (1990–2005), the landscape exhibited a high degree of fragmentation, with an average number of patches (NP) reaching 45,875. In the subsequent recovery phase (2005–2010), fragmentation was significantly reduced, with the average NP dropping to 30,628. (3) Stronger vegetation growth and higher NDVI values were observed along the riparian zone, with the West River demonstrating greater restoration effectiveness compared to the East River. This study revealed that EWDP serves as the key factor driving vegetation recovery. To enhance oasis stability, future ecological management strategies should optimize spatiotemporal water allocation while considering differential vegetation responses.
Journal Article
Air–Sea Interaction During Ocean Frontal Passage: A Case Study from the Northern South China Sea
by
Yu, Jingjie
,
Yang, Haiyuan
,
Zhu, Ruichen
in
Air temperature
,
air–sea interaction
,
Artificial satellites in remote sensing
2025
The northern South China Sea has abundant frontal systems near coastal and island regions, which play crucial roles in regional ocean dynamics and ecosystem. While previous studies have established preliminary understanding of their spatial distribution, seasonal variability, and dynamic characteristics, the atmospheric response to these frontal systems remains poorly understood. This study integrates observations from a moored buoy deployed on the continental shelf of the South China Sea with satellite remote sensing data to analyze oceanic and atmospheric variations during frontal passage. The results reveal that the ocean front can not only induce pronounced oceanic changes characterized by significant cooling, saltiness, and surface current acceleration, but also exert substantial influence on the overlying atmosphere, with consistent decreasing trends in air temperature, humidity, and atmospheric pressure, all of which rapidly recovered following frontal retreat. Notably, when the front directly traversed the buoy location, diurnal temperature cycles were markedly suppressed, while turbulent heat flux and downfront wind-stress curl reached peak magnitudes. These findings demonstrate that ocean fronts and associated sea surface temperature gradients can trigger intense air–sea exchange processes at the ocean–atmosphere interface.
Journal Article
Winter Extreme Mixed Layer Depth South of the Kuroshio Extension
2020
Change in the extratropical wintertime-mean mixed layer has been widely studied, given its importance to both physical and biogeochemical processes. With a focus on the south of the Kuroshio Extension region where the mixed layer is deepest in March, this study shows that variation of the synoptic-scale extreme mixed layer depth (MLD) is a better precursor than the monthly mean (or nonextreme) MLD for change in the subtropical mode water formation in spring, based on the NCEP Climate Forecast System Reanalysis (1979–2010). It is found that the extreme MLD events are attributable to the accumulation of excessive surface cooling driven by the synoptic storms that characterize cold-air outbreaks. Particularly, the difference between the extreme and nonextreme MLD is primarily related to differences in the cumulative synoptic heat flux anomalies, while a change in the preconditioning upper-ocean stratification contributes almost equally to both cases. Relative contributions of oceanic and atmospheric forcing to the interannual variation of the extreme MLD are quantified using a bulk mixed layer model. Results show comparable contributions: the preconditioning stratification change accounts for ∼44% of total variance of the extreme MLD, whereas the convective mixing by surface heat flux and the mechanical stirring by wind stress account for ;35% and ;13%, respectively. In addition, both the reanalysis and observational data reveal that the extreme and nonextreme MLD has been shallowed significantly during 1979–2010, which is accounted for by the strengthened stratification due to the enhanced ocean surface warming by the Kuroshio heat transport.
Journal Article
Potential role of permafrost thaw on increasing Siberian river discharge
2021
Despite the increasing Siberian river discharge, the sensitivity of streamflow to climate forcing/permafrost thawing is poorly quantified. Based on the Budyko framework and superposition principles, we detected and attributed the changes in streamflow regimes for the three great Siberian rivers (Ob, Yenisei, and Lena) during 1936–2019. Over the past 84 years, streamflow of Ob, Yenisei and Lena has increased by ∼7.7%, 7.4% and 22.0%, respectively. Intensified precipitation induced by a warming climate is a major contributor to increased annual streamflow. However, winter streamflow appears to be particularly sensitive to temperature. Whilst rising temperature can reduce streamflow via evapotranspiration, it can enhance groundwater discharge to rivers due to permafrost thawing. Currently, every 1 °C rise in temperature likely leads to 6.1%–10.5% increase in groundwater discharge, depending on the permafrost condition. For permafrost-developed basins, the contribution to increased streamflow from thawing permafrost will continue to increase in the context of global warming.
Journal Article
EF24 targets METTL3 to reprogram m6A methylation and induce ferroptosis: an epitranscriptomic mechanism with therapeutical potential for glioma
by
Ge, Li
,
Nini, Qu
,
Hao, Liu
in
3' Untranslated regions
,
Adenosine - analogs & derivatives
,
Adenosine - metabolism
2025
Glioma, the most common primary malignant tumor of the central nervous system, still brings a dismal prognosis, even after stringent standard therapies. This study investigates the RNA epitranscriptomic regulatory mechanism of curcumin analog EF24 in inducing ferroptosis to counter glioma. Both in vitro and in vivo experiments demonstrated that EF24 induces significant ferroptosis and effectively suppresses the growth and metastasis of glioma. Mechanistically, EF24 specifically downregulates the m6A methyltransferase METTL3, a core component of the RNA methylation machinery. More specific, METTL3 recruits an m6A reader YTHDF1 to catalyze methylation at the 3’-UTR region of NRF2 mRNA, forming an m6A-YTHDF1-NRF2 translational enhancement complex that activates downstream antioxidant gene GPX4 expression. EF24 disrupts this complex through suppressing NRF2 mRNA stability and impairing its protein translation, ultimately depleting GPX4 and triggering ferroptosis cascades. For the first time, our study proposes an epitranscriptomic axis of METTL3/YTHDF1/NRF2/GPX4 as a regulator of ferroptosis in glioma, which may be targeted to design an effective and safe therapeutic strategy.
Journal Article
The Spatiotemporal Response of Vegetation Changes to Precipitation and Soil Moisture in Drylands in the North Temperate Mid-Latitudes
2022
Vegetation growth in drylands is highly constrained by water availability. How dryland vegetation responds to changes in precipitation and soil moisture in the context of a warming climate is not well understood. In this study, warm drylands in the temperate zone between 30 and 50° N, including North America (NA), the Mediterranean region (MD), Central Asia (CA), and East Asia (EA), were selected as the study area. After verifying the trends and anomalies of three kinds of leaf area index (LAI) datasets (GLASS LAI, GLEAM LAI, and GLOBAMAP LAI) in the study area, we mainly used the climate (GPCC precipitation and ERA5 temperature), GLEAM soil moisture, and GLASS LAI datasets from 1981 to 2018 to analyze the response of vegetation growth to changes in precipitation and soil moisture. The results of the three mutually validated LAI datasets show an overall greening of dryland vegetation with the same increasing trend of 0.002 per year in LAI over the past 38 years. LAI and precipitation exhibited a strong correlation in the eastern part of the NA drylands and the northeastern part of the EA drylands. LAI and soil moisture exhibited a strong correlation in the eastern part of the NA drylands, the eastern part of the MD drylands, the southern part of the CA drylands, and the northeastern part of the EA drylands. The results of this study will contribute to the understanding of vegetation dynamics and their response to changing water conditions in the Northern Hemisphere midlatitude drylands.
Journal Article
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2
2015
Photosynthetic microbes are of emerging interest as production organisms in biotechnology because they can grow autotrophically using sunlight, an abundant energy source and CO
2
, a greenhouse gas. Important traits for such microbes are fast growth and amenability to genetic manipulation. Here we describe
Synechococcus
elongatus
UTEX 2973, a unicellular cyanobacterium capable of rapid autotrophic growth, comparable to heterotrophic industrial hosts such as yeast.
Synechococcus
UTEX 2973 can be readily transformed for facile generation of desired knockout and knock-in mutations. Genome sequencing coupled with global proteomics studies revealed that
Synechococcus
UTEX 2973 is a close relative of the widely studied cyanobacterium
Synechococcus
elongatus
PCC 7942, an organism that grows more than two times slower. A small number of nucleotide changes are the only significant differences between the genomes of these two cyanobacterial strains. Thus, our study has unraveled genetic determinants necessary for rapid growth of cyanobacterial strains of significant industrial potential.
Journal Article
Distinct roles of nuclear basket proteins in directing the passage of mRNA through the nuclear pore
by
Li, Yichen
,
Chen, Shane
,
Arnaoutov, Alexei
in
Active Transport, Cell Nucleus
,
Biological Sciences
,
Biophysics and Computational Biology
2021
The in vivo characterization of the exact copy number and the specific function of each composite protein within the nuclear pore complex (NPC) remains both desirable and challenging. Through the implementation of live-cell high-speed super-resolution single-molecule microscopy, we first quantified the native copies of nuclear basket (BSK) proteins (Nup153, Nup50, and Tpr) prior to knocking them down in a highly specific manner via an auxin-inducible degron strategy. Second, we determined the specific roles that BSK proteins play in the nuclear export kinetics ofmodel messenger RNA (mRNA) substrates. Finally, the three-dimensional (3D) nuclear export routes of these mRNA substrates through native NPCs in the absence of specific BSK proteins were obtained and further validated via postlocalization computational simulations. We found that these BSK proteins possess the stoichiometric ratio of 1:1:1 and play distinct roles in the nuclear export of mRNAs within live cells. The absence of Tpr from the NPC predominantly reduces the probability of nuclearmRNAs entering the NPC for export. Complete depletion of Nup153 and Nup50 results in an mRNA nuclear export efficiency decrease of approximately four folds. mRNAs can gain their maximum successful export efficiency as the copy number of Nup153 increased from zero to only half the full complement natively within the NPC. Lastly, the absence of Tpr or Nup153 seems to alter the 3D export routes of mRNAs as they pass through the NPC. However, the removal of Nup50 alone has almost no impact upon mRNA export route and kinetics.
Journal Article
Engineering Nitrogen Fixation Activity in an Oxygenic Phototroph
by
Liu, Deng
,
Yu, Jingjie
,
Bhattacharyya-Pakrasi, Maitrayee
in
Bacterial Proteins - chemistry
,
Bacterial Proteins - genetics
,
Bacterial Proteins - metabolism
2018
Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme found only in prokaryotes. N 2 fixation is energetically highly expensive, and an energy-generating process such as photosynthesis can meet the energy demand of N 2 fixation. However, synthesis and expression of nitrogenase are exquisitely sensitive to the presence of oxygen. Thus, engineering nitrogen fixation activity in photosynthetic organisms that produce oxygen is challenging. Cyanobacteria are oxygenic photosynthetic prokaryotes, and some of them also fix N 2 . Here, we demonstrate a feasible way to engineer nitrogenase activity in the nondiazotrophic cyanobacterium Synechocystis sp. PCC 6803 through the transfer of 35 nitrogen fixation ( nif ) genes from the diazotrophic cyanobacterium Cyanothece sp. ATCC 51142. In addition, we have identified the minimal nif cluster required for such activity in Synechocystis 6803. Moreover, nitrogenase activity was significantly improved by increasing the expression levels of nif genes. Importantly, the O 2 tolerance of nitrogenase was enhanced by introduction of uptake hydrogenase genes, showing this to be a functional way to improve nitrogenase enzyme activity under micro-oxic conditions. To date, our efforts have resulted in engineered Synechocystis 6803 strains that, remarkably, have more than 30% of the N 2 fixation activity of Cyanothece 51142, the highest such activity established in any nondiazotrophic oxygenic photosynthetic organism. This report establishes a baseline for the ultimate goal of engineering nitrogen fixation ability in crop plants. IMPORTANCE Application of chemically synthesized nitrogen fertilizers has revolutionized agriculture. However, the energetic costs of such production processes and the widespread application of fertilizers have raised serious environmental issues. A sustainable alternative is to endow to crop plants the ability to fix atmospheric N 2 in situ . One long-term approach is to transfer all nif genes from a prokaryote to plant cells and to express nitrogenase in an energy-producing organelle, chloroplast, or mitochondrion. In this context, Synechocystis 6803, the nondiazotrophic cyanobacterium utilized in this study, provides a model chassis for rapid investigation of the necessary requirements to establish diazotrophy in an oxygenic phototroph. Application of chemically synthesized nitrogen fertilizers has revolutionized agriculture. However, the energetic costs of such production processes and the widespread application of fertilizers have raised serious environmental issues. A sustainable alternative is to endow to crop plants the ability to fix atmospheric N 2 in situ . One long-term approach is to transfer all nif genes from a prokaryote to plant cells and to express nitrogenase in an energy-producing organelle, chloroplast, or mitochondrion. In this context, Synechocystis 6803, the nondiazotrophic cyanobacterium utilized in this study, provides a model chassis for rapid investigation of the necessary requirements to establish diazotrophy in an oxygenic phototroph.
Journal Article
Recent regional warming across the Siberian lowlands: a comparison between permafrost and non-permafrost areas
2022
The northern mid-high latitudes experience climate warming much faster than the global average. However, the difference in the temperature change rates between permafrost and non-permafrost zones remains unclear. In this study, we investigated the temporal changes in temperature means and extremes across the Siberian lowlands (<500 m) over the past six decades (1960–2019) using in situ observations and reanalysis data. The results show that permafrost zones (0.39 °C/decade) have warmed faster than non-permafrost zones (0.31 °C/decade). The minimum values of the daily maximum ( TXn ) and minimum ( TNn ) temperatures changed faster than their maximum values ( TXx, TNx ), suggesting that low minimum temperatures increase faster, as evidenced by the considerably higher warming rate in the cool season (October–April, 0.43 ± 0.10 °C/decade, n = 126) than that in the warm season (May–September, 0.25 ± 0.08 °C/decade, n = 119). The change rates of TXx and TNx in permafrost areas were 2–3 times greater than those in non-permafrost areas; however, over the last ten years, TXx and TNx in non-permafrost areas showed decreasing trends. Moreover, faster-warming permafrost regions do not exhibit a faster increase in surface net solar radiation than slower-warming non-permafrost regions. While our findings suggest that carbon emissions from thawing soils are likely a potential driver of rapid warming in permafrost-dominated regions, the potential feedback between ground thawing and climate warming in permafrost regions remains uncertain.
Journal Article