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197 result(s) for "Zhang, Fengrui"
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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells
SARS-CoV-2 is a betacoronavirus with a single-stranded, positive-sense, 30-kilobase RNA genome responsible for the ongoing COVID-19 pandemic. Although population average structure models of the genome were recently reported, there is little experimental data on native structural ensembles, and most structures lack functional characterization. Here we report secondary structure heterogeneity of the entire SARS-CoV-2 genome in two lines of infected cells at single nucleotide resolution. Our results reveal alternative RNA conformations across the genome and at the critical frameshifting stimulation element (FSE) that are drastically different from prevailing population average models. Importantly, we find that this structural ensemble promotes frameshifting rates much higher than the canonical minimal FSE and similar to ribosome profiling studies. Our results highlight the value of studying RNA in its full length and cellular context. The genomic structures detailed here lay groundwork for coronavirus RNA biology and will guide the design of SARS-CoV-2 RNA-based therapeutics. Lan et al. report RNA structure ensembles across the entire SARSCoV-2 genome in infected human cells at single nucleotide resolution. They find alternative RNA conformations critical for promoting near-native frameshifting rates in ORF1ab.
Polyfluorinated crosslinker-based solid polymer electrolytes for long-cycling 4.5 V lithium metal batteries
Solid polymer electrolytes (SPEs), which are favorable to form intimate interfacial contacts with electrodes, are promising electrolyte of choice for long-cycling lithium metal batteries (LMBs). However, typical SPEs with easily oxidized oxygen-bearing polar groups exhibit narrow electrochemical stability window (ESW), making it impractical to increase specific capacity and energy density of SPE based LMBs with charging cut-off voltage of 4.5 V or higher. Here, we apply a polyfluorinated crosslinker to enhance oxidation resistance of SPEs. The crosslinked network facilitates transmission of the inductive electron-withdrawing effect of polyfluorinated segments. As a result, polyfluorinated crosslinked SPE exhibits a wide ESW, and the Li|SPE|LiNi 0.5 Co 0.2 Mn 0.3 O 2 cell with a cutoff voltage of 4.5 V delivers a high discharge specific capacity of ~164.19 mAh g −1 at 0.5 C and capacity retention of ~90% after 200 cycles. This work opens a direction in developing SPEs for long-cycling high-voltage LMBs by using polyfluorinated crosslinking strategy. Solid polymer electrolytes are commonly used in lithium-metal batteries, but their capacity and energy density cannot be easily increased beyond a charging cut-off voltage of 4.5 V due to the presence of easily oxidized oxygen-bearing polar groups. Here, authors apply a polyfluorinated crosslinker to enhance the oxidation resistance to solve this issue
Coherent motions in a turbulent wake of an axisymmetric bluff body
The wake flow past an axisymmetric body of revolution at a diameter-based Reynolds number $Re=u_{\\infty }D/\\nu =5000$ is investigated via a direct numerical simulation. The study is focused on identification of coherent vortical motions and the dominant frequencies in this flow. Three dominant coherent motions are identified in the wake: the vortex shedding motion with the frequency of $St=fD/u_{\\infty }=0.27$, the bubble pumping motion with $St=0.02$, and the very-low-frequency (VLF) motion originated in the very near wake of the body with the frequency $St=0.002$–$0.005$. The vortex shedding pattern is demonstrated to follow a reflectional symmetry breaking mode, whereas the vortex loops are shed alternatingly from each side of the vortex shedding plane, but are subsequently twisted and tangled, giving the resulting wake structure a helical spiraling pattern. The bubble pumping motion is confined to the recirculation region and is a result of a Görtler instability. The VLF motion is related to a stochastic destabilisation of a steady symmetric mode in the near wake and manifests itself as a slow, precessional motion of the wake barycentre. The VLF mode with $St=0.005$ is also detectable in the intermediate wake and may be associated with a low-frequency radial flapping of the shear layer.
Room temperature all-solid-state lithium batteries based on a soluble organic cage ionic conductor
All solid-state lithium batteries (SSLBs) are poised to have higher energy density and better safety than current liquid-based Li-ion batteries, but a central requirement is effective ionic conduction pathways throughout the entire cell. Here we develop a catholyte based on an emerging class of porous materials, porous organic cages (POCs). A key feature of these Li + conducting POCs is their solution-processibility. They can be dissolved in a cathode slurry, which allows the fabrication of solid-state cathodes using the conventional slurry coating method. These Li + conducting cages recrystallize and grow on the surface of the cathode particles during the coating process and are therefore dispersed uniformly in the slurry-coated cathodes to form a highly effective ion-conducting network. This catholyte is shown to be compatible with cathode active materials such as LiFePO 4 , LiCoO 2 and LiNi 0.5 Co 0.2 Mn 0.3 O 2 , and results in SSLBs with decent electrochemical performance at room temperature. While solid-state batteries offer higher energy densities than liquid-based batteries, such devices require effective ion conduction pathways. Here, authors prepare porous organic cages as solution-processable catholytes that are enable excellent performances from various cathode active materials.
Calculation and analysis of quasi-dynamic cutting force and specific cutting energy in micro-milling Ti6Al4V
Micro-milling force and specific cutting energy play an important role in revealing the micro-milling mechanism. However, it is quite difficult to compare the micro-milling force values from different experiments due to the lack of a representative cutting force parameter to comprehensively evaluate the micro-milling force. Especially, there is no unified formula to accurately calculate the specific cutting energy in micro-milling due to variable chip cross-sectional area and periodically varying micro-milling force. In this work, the micro-milling force was systematically analyzed with fast Fourier transform spectrum analysis, curve shape, and representative parameter evaluation. The quasi-dynamic cutting force, which is represented by the P–V value of cutting force, was adopted to comprehensively evaluate the micro-milling force. The specific cutting energy was calculated with the ratio of quasi-dynamic cutting force and the average undeformed chip thickness. Moreover, the variable regularity of quasi-dynamic cutting force and specific cutting energy on cutting parameters were obtained with the micro-milling experiment. The results show that the quasi-dynamic cutting force first decreases and then increases with the increase of feed per tooth due to the chip accumulation effect. With the increase of spindle speed and depth of cut, the quasi-dynamic cutting force decreases and increases, respectively. The minimum undeformed chip thickness is between 0.3 and 0.5 μm, which is around 0.19 to 0.32 of tool edge radius in micro-milling Ti6Al4V. With the increase of spindle speed and depth of cut, the specific cutting energy shows a decreasing trend and changes a little, respectively. With the decrease of the feed per tooth, the specific cutting force shows a nonlinear increase. Our findings are of great significance for further scientific understanding the micro-milling mechanism from the perspective of cutting force and specific cutting energy.
LINC01123 promotes immune escape by sponging miR-214-3p to regulate B7–H3 in head and neck squamous-cell carcinoma
Numerous studies have shown that long noncoding RNAs (LncRNAs) are involved in the development and immune escape of head and neck squamous-cell carcinoma (HNSCC). However, the specific regulatory mechanisms by which LINC01123 regulates HNSCC and its correlation with immunity remain unclear. Therefore, this study’s primary purpose was to explore the mechanisms by which LINC01123 regulates the immune escape and progression of HNSCC. This study confirmed that LINC01123 is competitively bound to miR-214-3p, and miR-214-3p specifically targets B7–H3 . The effects of LINC01123, B7–H3 , and miR-214-3p on tumor progression, CD8 + T-cell-mediated immune response, and the tumorigenicity of HNSCC in vitro and in vivo were examined through the downregulation or upregulation of LINC01123, B7–H3 , and miR-214-3p. Our results indicated that LINC01123 and B7–H3 were highly expressed in HNSCC and are associated with poor prognosis in patients. Notably, overexpression of LINC01123 or B7–H3 or downregulation of miR-214-3p inhibited the function of CD8 + T cells and promoted the progression of HNSCC. Therefore, LINC01123 acts as a miR-214-3p sponge to inhibit the activation of CD8 + T cells and promote the progression of HNSCC by upregulating B7–H3 .
Wide-temperature range and high safety electrolytes for high-voltage Li-metal batteries
Along with the keeping growing demand for high-energy-density energy storage system, high-voltage Li-metal batteries (LMBs) have attracted many attentions. In view of many defects of the commercial electrolytes, such as flammability, limited operation temperature range, and severe Li dendrite growth, non-flammable phosphate-based localized highly concentrated electrolytes (LHCE) have been explored as one of the safe electrolytes for LMBs. But until now there is rare report on wide-temperature range LMBs using phosphate-based electrolytes. Here, we prepare a wide-temperature LHCE, which is composed of lithium difluoro(oxalato)borate (LiDFOB), triethyl phosphate (TEP), and 1,1,2,2-tetrafluoroethyl-2,2,3,3-tetrafluoropropyl ether (HFE), and explore the applicability in wide-temperature LMBs from −40 to 70 °C. In the LHCE, both TEP and HFE are non-flammable, and Li + is highly coordinated with TEP and DFOB − , which can effectively inhibit the TEP decomposition on anode, and facilitate the preferential reduction of DFOB − , thus obtain a robust solid electrolyte interphase (SEI) to suppress Li dendrite growth and side reactions. Therefore, this LHCE can not only endow Li/Cu and Li/Li cells with high Coulombic efficiency (CE) and long cycling lifespan, but also be applied to LiFePO 4 (LFP)/Li and LiNi 0.5 Co 0.2 Mn 0.3 O 2 (NCM523)/Li LMBs. Most importantly, the NCM523/Li LMBs with LHCE can deliver stable cycling performance at 4.5 V high-voltage and high-temperature (70 °C), as well as excellent low-temperature capacity retention even though both charging and discharging process were carried out at −40 °C.
Experimental investigation on the evolution of damage and seepage characteristics for red sandstone under thermal–mechanical coupling conditions
Rock masses in underground space usually experience the coupling of high-temperature field, stress field and seepage field, which gives them complex mechanical behavior and permeability characteristics. To study the mechanical properties and permeability characteristics of red sandstone under different temperature environments, a seepage test under high temperature and triaxial compression is carried out based on the RLW-2000 multi-field coupling tester. The results show that the plastic flow of red sandstone at the stress peak under the same temperature is more obvious with the increase of confining pressure. In addition, as the confining pressure gradient increases, the permeability decreases and the trend becomes slower. And the higher the operating temperature, the easier to produce seepage channels inside the rock sample. The development of fissures is rapidly developed under the effect of temperature, so the seepage channels are widened and increased, and the permeability is greatly increased. The constitutive model of rock statistical damage considering the interaction of high temperature and osmotic pressure was constructed based on the experimental data and combining theoretical methods to reveal the characteristics of permeability evolution induced by thermal damage of rocks. The research results can be used as a reference for monitoring rock stability during geological engineering projects involving thermal–seepage–stress coupling conditions.
Heat shock transcription factor 2 reduces mitochondrial pathway apoptosis in intestinal epithelial cells by inhibiting the increase in mitochondrial membrane permeability in ulcerative colitis
The destruction of intestinal mucosal mechanical barrier homeostasis caused by excessive apoptosis of intestinal epithelial cells (IECs) is an important reason for the occurrence and development of ulcerative colitis (UC). The increase in mitochondrial membrane permeability caused by the opening of the mitochondrial membrane permeability transition pore (mPTP) is a key link in the initiation of mitochondrial pathway apoptosis. Our previous studies revealed that heat shock transcription factor 2 (HSF2), which is highly expressed in the intestinal mucosa of UC patients, can inhibit the expression of the cytochrome C (Cyto-C)/Caspase-9/Caspase-3 proteins in the mitochondrial pathway of apoptosis, but the regulatory mechanism is unknown. It has been reported that heat shock proteins regulated by heat shock transcription factors are closely related to mPTP opening. Therefore, we hypothesized that HSF2 affects mitochondrial pathway apoptosis in IECs by regulating mPTP opening. In this study, we altered the level of HSF2 in Caco-2 cells by lentivirus transfection to explore the changes in the mitochondrial membrane permeability of Caco-2 cells in an inflammatory environment. Subsequently, the mPTP agonist atractylorhizin (Atr) and inhibitor cyclosporine A (CsA) were used to clarify the regulatory effects of HSF2 on mPTP and the Cyto-C/Caspase-9/Caspase-3 pathways. Our study confirmed for the first time that HSF2 plays a protective role in UC by inhibiting mPTP opening, the increase in mitochondrial membrane permeability and the activation of the mitochondrial-mediated apoptosis pathway in IECs.
The effects of aqueous extract from watermelon (Citrullus lanatus) peel on the growth and physiological characteristics of Dolichospermum flos-aquae
Nowadays, the increasing Dolichospermum ( Anabaena ) blooms pose a major threat to the aquatic environment and public health worldwide. The use of naturally derived chemicals from plants to control cyanobacteria blooms has recently received a tremendous amount of attention. This study investigates the possibility of transforming watermelon peel (WMP) into a biological resource to allelopathically inhibit Dolichospermum flos-aquae blooms. The results demonstrated that the growth of D. flos-aquae was efficiently restricted by the aqueous extract of watermelon peel (WMPAE) in a concentration-dependent manner. Cell viability decreased quickly, intracellular structural damage occurred, chlorophyll a in algal cells degraded, and photosynthesis was clearly inhibited. At the same time, the levels of reactive oxygen species in viable cells increased significantly, as did malondialdehyde levels, indicating that WMPAE elucidated strong oxidative stress and corresponding damage to D. flos-aquae . Capsular polysaccharide (CPS) levels increased in all treatment groups, which represents an adaptive response indicative of the development of resistance to WMPAE stress and oxidative damage. Despite this, WMPAE had clear inhibitory effects on D. flos-aquae . These findings provide fundamental information on an allelopathic system that could be a novel and attractive approach for suppressing D. flos-aquae blooms in small aquatic environments, especially aquaculture ponds.