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result(s) for
"Zhao, Xue-Li"
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Assessing the impact of land surface temperature on urban net primary productivity increment based on geographically weighted regression model
2021
Urbanization had a huge impact on the regional ecosystem net primary productivity (NPP). Although the urban heat island (UHI) caused by urbanization has been found to have a certain promoting effect on urban vegetation NPP, the factors on the impact still are not identified. In this study, the impact of urbanization on NPP was divided into direct impact (NPP
dir
) and indirect impact (NPP
ind
), taking Kunming city as a case study area. Then, the spatial heterogeneity impact of land surface temperature (LST) on NPP
ind
was analyzed based on the geographically weighted regression (GWR) model. The results indicated that NPP, LST, NPP
dir
and NPP
ind
in 2001, 2009 and 2018 had significant spatial autocorrelation in Kunming based on spatial analytical model. LST had a positive impact on NPP
ind
in the central area of Kunming. The positively correlation areas of LST on NPP
ind
increased by 4.56%, and the NPP
ind
caused by the UHI effect increased by an average of 4.423 gC m
−2
from 2009 to 2018. GWR model can reveal significant spatial heterogeneity in the impacts of LST on NPP
ind
. Overall, our findings indicated that LST has a certain role in promoting urban NPP.
Journal Article
Phylogenomics and plastome evolution of Indigofera (Fabaceae)
by
Yan, Si-Yuan
,
Zhao, Xue-Li
,
Wang, Fang
in
Bayesian analysis
,
Biological evolution
,
Chloroplasts
2023
L. is the third largest genus in Fabaceae and includes economically important species that are used for indigo dye-producing, medicinal, ornamental, and soil and water conservation. The genus is taxonomically difficult due to the high level of overlap in morphological characters of interspecies, fewer reliability states for classification, and extensive adaptive evolution. Previous characteristic-based taxonomy and nuclear ITS-based phylogenies have contributed to our understanding of
taxonomy and evolution. However, the lack of chloroplast genomic resources limits our comprehensive understanding of the phylogenetic relationships and evolutionary processes of
.
Here, we newly assembled 18 chloroplast genomes of
. We performed a series of analyses of genome structure, nucleotide diversity, phylogenetic analysis, species pairwise Ka/Ks ratios, and positive selection analysis by combining with allied species in Papilionoideae.
The chloroplast genomes of
exhibited highly conserved structures and ranged in size from 157,918 to 160,040 bp, containing 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Thirteen highly variable regions were identified, of which
K-
L,
F-
L, and
1 were considered as candidate DNA barcodes for species identification of
. Phylogenetic analysis using maximum likelihood (ML) and Bayesian inference (BI) methods based on complete chloroplast genome and protein-coding genes (PCGs) generated a well-resolved phylogeny of
and allied species.
monophyly was strongly supported, and four monophyletic lineages (i.e., the Pantropical, East Asian, Tethyan, and Palaeotropical clades) were resolved within the genus. The species pairwise Ka/Ks ratios showed values lower than 1, and 13 genes with significant posterior probabilities for codon sites were identified in the positive selection analysis using the branch-site model, eight of which were associated with photosynthesis. Positive selection of
suggested that
species have experienced adaptive evolution to selection pressures imposed by their herbivores and pathogens. Our study provided insight into the structural variation of chloroplast genomes, phylogenetic relationships, and adaptive evolution in
. These results will facilitate future studies on species identification, interspecific and intraspecific delimitation, adaptive evolution, and the phylogenetic relationships of the genus
.
Journal Article
Differences in Proinflammatory Property of Six Subtypes of Peroxiredoxins and Anti-Inflammatory Effect of Ligustilide in Macrophages
by
Liu, Dong-Ling
,
Gu, Man-Xia
,
Du, Jun-Rong
in
4-Butyrolactone - analogs & derivatives
,
4-Butyrolactone - metabolism
,
Alzheimer's disease
2016
Peroxiredoxins (Prxs) are proposed to function as damage-associated molecular patterns (DAMPs) and contribute to post-ischemic neuroinflammation and brain injury by activating Toll-like receptor (TLR) 4 at the acute and subacute phases after ischemic stroke. However, there are few studies concerning the inflammatory profiles of six distinct subtypes of Prxs (Prx1-Prx6). Our previous study demonstrated that the protective effect of ligustilide (LIG) against cerebral ischemia was associated with inhibition of neuroinflammatory response and Prx/TLR4 signaling in rats. Herein, the present study explored the inflammatory members of Prxs and the effect of LIG on their inflammatory responses in macrophages.
The murine RAW264.7 macrophages were treated with each of exogenous recombinant Prxs at a range of 1 to 50 nM for 24 h. The WST-1 test showed that Prx3 exhibited a significant cytotoxicity, whereas the rest five Prxs did not affect cellular viability. The quantitative measurements with spectrometry or ELISA indicated that three subtypes, Prx1, Prx2 and Prx4, increased production of proinflammatory mediators, including nitric oxide (NO) metabolites, tumor necrosis factor-α (TNF-α), and interleukin-6 (IL-6) in a concentration-dependent manner. Immunostaining demonstrated that 20 nM Prx1, Prx2 or Prx4 significantly increased expression of TLR4 and iNOS and nuclear translocation of NF-κB p65. However, Prx5 and Prx6 showed no poinflammatory effect in macrophages. Remarkably, LIG treatment effectively inhibited the inflammatory response induced by Prx1, Prx2 and Prx4.
Three members of Prxs, Prx1, Prx2 and Prx4, are inflammatory DAMPs that induce TLR4 activation and inflammatory response in macrophages, which is effectively inhibited by LIG. These results suggest that inflammatory Prxs-activated macrophages may provide a novel cellular model for screening the potential inhibitors of DAMPs-associated inflammatory diseases such as stroke. Moreover, selective blocking strategies targeting the inflammatory subtypes of Prxs probably provide promising therapeutic approaches with a prolonged time window for stroke.
Journal Article
Two new glutarimide antibiotics from Streptomyces sp. HS-NF-780
2019
Two new glutarimide antibiotics, 9-methylstreptimidone 2-α-d-glucopyranoside (1), and hydroxyiso-9-methylstreptimidone (2), along with a known compound, 9-methylstreptimidone (3), have been isolated from the broth of Streptomyces sp. HS-NF-780. Their structures were determined on the basis of spectroscopic analysis, including 1D and 2D NMR techniques as well as ESI-MS and comparison with data from the literature. By modified Mosher’s method and acid hydrolysis, the absolute configurations of compounds 1 and 2 were established. Compounds 1 and 2 exhibited moderate cytotoxic activity.
Journal Article
Comparative Genomics and Phylogenetic Analyses of Christia vespertilionis and Urariopsis brevissima in the Tribe Desmodieae (Fabaceae: Papilionoideae) Based on Complete Chloroplast Genomes
2020
Taxonomic and phylogenetic relationships of Christia, Urariopsis, Uraria and related genera within the tribe Desmodieae (Fabaceae: Papilionoideae) have long been controversial. Here, we report the complete chloroplast (cp) genomes of Christia vespertilionis and Urariopsis brevissima and perform comparative and phylogenetic analyses with Uraria lagopodioides and other relatives in the Desmodieae. The cp genomes of C. vespertilionis and U. brevissima are 149,656 and 149,930 bp long, with 128 unique genes (83 protein-coding genes, 37 tRNA genes and 8 rRNA genes), respectively. Comparative analyses revealed 95-129 simple sequence repeats (SSRs) and eleven highly variable regions (trnK-rbcL, rbcL-atpB, ndhJ-trnF, trnL-trnT, psbD-rpoB, accD-cemA, petA-psbL, psbE-petL, rps11-rps19, ndhF-ccsA, and rps15-ycf1) among six Desmodieae species. Phylogenetic analyses clearly resolved two subtribes (Desmodiinae and Lespedezinae) of Desmodieae as monophyletic, and the newly reported C. vespertilionis and U. brevissima clustered in subtribe Desmodiinae. A sister relationship of C. vespertilionis to U. lagopodioides was supported. Evidence was presented to support the treatment of Urariopsis as a distinct genus rather than in synonymy with Uraria. The results provide valuable information for further studies on species delimitation, phylogenetics, population genetics, and the evolutionary process of speciation in the Desmodieae.
Journal Article
Indigofera jintongpenensis (Fabaceae, Papilionoideae, Indigofereae), a new species from Yunnan, southwest China
2024
Indigofera jintongpenensis , a new species of the subfamily Papilionoideae of Fabaceae, is described and illustrated from Yunnan, southwest China. The new species is characterised by having a prostrate habit, flexible stems and branches, as well as spreading, sub-basifixed, asymmetrically 2-branched trichomes covering the entire plant, discoid calyx, and racemose inflorescences 6–8-flowered, short, 1–2 (–3.5) cm in length, apparently shorter than the leaf. A distribution map and comparison of morphological diagnostic characters with its morphologically similar species are provided. Additionally, a preliminary conservation assessment of I. jintongpenensis is proposed following IUCN criteria.
Journal Article
Pollen morphology of Indigofera (Fabaceae) in China and its taxonomic implications
2016
Asia, especially the temperate Sino-Himalayan region is one of the four major diversity centers of Indigofera. Pollen morphology of Indigofera species in the Sino-Himalayan region is poorly known. In this study, pollen morphology of 52 samples representing 43 Chinese Indigofera species and two varieties was examined using scanning electron microscopy to evaluate its taxonomic significance. Parasyncolpate pollen grains were described in Indigofera for the first time. Cluster and principal component analyses were conducted based on four quantitative and three qualitative pollen characters. Five groups were recognized within Chinese Indigofera in the cluster analysis, but only one can be separated by the first three principal components. The shape and size of pollen grains in Indigofera are highly variable. Consequently, both the characters lack any significant taxonomic value. The number of apertures, tectum architecture and perforation density shows some taxonomic significance. The pollen morphology exhibits obvious phylogenetic and biogeographical significance on large scales in Indigofera. Although pollen characters alone are insufficient to reconstruct the taxonomic relationships within Indigofera, palynological data can provide some useful information for the species-level revisions.
Journal Article
The demographic response of a deciduous shrub (the Indigofera bungeana complex, Fabaceae) to the Pleistocene climate changes in East Asia
2017
East Asia harbors the highest level of floristic diversity among the world’s temperate regions. Despite the increase in phylogeographic studies of temperate plants in East Asia, far less attention has been paid to widely distributed deciduous shrubs that widespread across several floral regions. We sequenced two chloroplast DNA (cpDNA) fragments (
ndh
J-
trn
F and
trn
D-
trn
T) and one nuclear DNA (
Pgk1
) of 472 individuals from 51 populations of such a group, the
Indigofera bungeana
complex. We used population genetic data as well as ecological niche modelling to examine the evolutionary history and glacial refugia during the Last Glacial Maximum (LGM) of this group. We recovered 133 cpDNA and 68 nuclear haplotypes. The star-phylogeny of the recovered cpDNA and nuclear haplotypes and demographic analyses suggested distinct range expansion of
I. bungeana
complex have occurred during the early and middle Pleistocene. The climate change of the LGM might have affected little on the distribution of this complex based on the niche modelling. However, these climate changes and geographic isolation probably resulted in fixtures of the private haplotypes and genetic differentiations between regions. Our results suggested that this arid-tolerant species complex may have different responses to the Quaternary climate changes with those climate-sensitive species.
Journal Article
System Prediction and Validation of TCM for Chronic Myeloid Leukemia Treatment from the Perspective of Low-Toxicity Chemotherapy: A Stilbene α-Viniferin Has a Proapoptotic Effect on K562 Cells via the Mitochondrial Pathway
2020
Objective. In traditional Chinese medicine (TCM), chronic myeloid leukemia (CML) has been attributed to “poisoned bone marrow,” which is viewed as a loss of Qi or blood, a deficiency in Yin or Yang that causes a complex imbalance between cell growth and death. Malignant myeloid progenitor cells display excessive growth that is difficult to control without toxicity. More than 60 herbs in TCM have shown efficacy against CML. However, the key molecules and mechanisms involved in the holistic-level characterization, as well as the effective target associations, are still unknown. Methods. The present study employed a computational approach with filtering potential compounds via admetSAR, systems biology-based functional data prediction, and biochemical and molecular biological validation. Results. We generated 118 bioactive compounds from 11 herbs within four dialectical therapy groups that are most commonly used to treat CML and predicted 141 potential targets. The stilbene resveratrol and its derivatives were found to be highly related to these targets. Among them, α-viniferin was predicted to target Bcl-2, caspase-3, 8, and 9, MAPK14, CDK2, HSP90AA1, and others, reflecting CML therapeutic strategies. In vitro, experimental data showed a nonnecrotic growth limitation of K562 cells caused by α-viniferin, with an IC50 of 13.61 μg·mL−1 at 24 h. Finally, we validated the chemotherapeutic effect of α-viniferin in association with a mitochondria-driven apoptotic mechanism and in sequences entailing mitochondrial dysfunction, which had attributed to the expression of the proapoptotic Bcl-2 protein and executed K562 cell apoptosis. Conclusions. Our work sheds light on the mechanism of the efficacy of the stilbene α-viniferin in TCM for the prevention of CML. This work also predicts and validates targets in the mitochondrial signaling pathway, providing a novel strategy for CML treatment.
Journal Article
The complete chloroplast genome of Uraria lagopodioides (Fabaceae)
2020
The complete chloroplast genome of Uraria lagopodioides is determined in this study. The plastome is 149,828 bp in length and comprises a large single-copy region (83,133 bp), a small single-copy region (18,443 bp), and a pair of inverted repeats (24,126 bp). A total of 128 genes were identified, including 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content is 35.2%. Phylogenetic analysis of 15 plastome sequences within Fabaceae revealed U. lagopodioides was closely related to Desmodium heterocarpon.
Journal Article