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result(s) for
"Zhukov, Alexander A."
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Ultra-thin van der Waals crystals as semiconductor quantum wells
by
Wilson, Neil R.
,
Zou, Yichao
,
Novoselov, Kostya S.
in
639/925/357/1018
,
639/925/357/995
,
Crystals
2020
Control over the quantization of electrons in quantum wells is at the heart of the functioning of modern advanced electronics; high electron mobility transistors, semiconductor and Capasso terahertz lasers, and many others. However, this avenue has not been explored in the case of 2D materials. Here we apply this concept to van der Waals heterostructures using the thickness of exfoliated crystals to control the quantum well dimensions in few-layer semiconductor InSe. This approach realizes precise control over the energy of the subbands and their uniformity guarantees extremely high quality electronic transport in these systems. Using tunnelling and light emitting devices, we reveal the full subband structure by studying resonance features in the tunnelling current, photoabsorption and light emission spectra. In the future, these systems could enable development of elementary blocks for atomically thin infrared and THz light sources based on intersubband optical transitions in few-layer van der Waals materials.
A plethora of solid-state nanodevices rely on engineering the quantization of electrons in quantum wells. Here, the authors leverage the thickness of exfoliated 2D crystals to control the quantum well dimensions in few-layer semiconductor InSe and investigate the resonance features in the tunnelling current, photoabsorption and light emission spectra.
Journal Article
Ubiquitin chain conformation regulates recognition and activity of interacting proteins
by
Zhukov, Alexander A.
,
Horrocks, Mathew H.
,
Ruedas-Rama, Maria J.
in
631/45/56
,
631/45/612/645
,
631/57/2272/2273
2012
Single-molecule FRET assays used to probe the conformational dynamics of ubiquitin chains reveal that conformational selection is an important mechanism of ubiquitin chain recognition.
Role of variation in polyubiquitin structure
Post-translational modification of protein by ubiquitin regulates many biological processes. Ubiquitin is conjugated to its substrates either as a monomer or as polymeric chains. These chains come in various forms with distinct linkage types, for instance through the Lys 48, Lys 63 or Met 1 residues, depending on the cell function involved. In this study, Komander and colleagues use single-molecule fluorescence resonance energy transfer assays to probe the conformational dynamics of ubiquitin chains. The results suggest that conformational selection is an important mechanism of chain recognition by ubiquitin-binding domains and deubiquitinases, suggesting that factors influencing ubiquitin chain conformation and dynamics may be regulators of the ubiquitin system.
Mechanisms of protein recognition have been extensively studied for single-domain proteins
1
, but are less well characterized for dynamic multidomain systems. Ubiquitin chains represent a biologically important multidomain system that requires recognition by structurally diverse ubiquitin-interacting proteins
2
,
3
. Ubiquitin chain conformations in isolation are often different from conformations observed in ubiquitin-interacting protein complexes, indicating either great dynamic flexibility or extensive chain remodelling upon binding. Using single-molecule fluorescence resonance energy transfer, we show that Lys 63-, Lys 48- and Met 1-linked diubiquitin exist in several distinct conformational states in solution. Lys 63- and Met 1-linked diubiquitin adopt extended ‘open’ and more compact ‘closed’ conformations, and ubiquitin-binding domains and deubiquitinases (DUBs) select pre-existing conformations. By contrast, Lys 48-linked diubiquitin adopts predominantly compact conformations. DUBs directly recognize existing conformations, but may also remodel ubiquitin chains to hydrolyse the isopeptide bond. Disruption of the Lys 48–diubiquitin interface changes conformational dynamics and affects DUB activity. Hence, conformational equilibria in ubiquitin chains provide an additional layer of regulation in the ubiquitin system, and distinct conformations observed in differently linked polyubiquitin may contribute to the specificity of ubiquitin-interacting proteins.
Journal Article
Plasmon-induced nanoscale quantised conductance filaments
by
Zhukov, Alexander A.
,
Grigorenko, Alexander N.
,
Kravets, Vasyl G.
in
142/126
,
639/624/399/354
,
639/925/927/1021
2017
Plasmon-induced phenomena have recently attracted considerable attention. At the same time, relatively little research has been conducted on electrochemistry mediated by plasmon excitations. Here we report plasmon-induced formation of nanoscale quantized conductance filaments within metal-insulator-metal heterostructures. Plasmon-enhanced electromagnetic fields in an array of gold nanodots provide a straightforward means of forming conductive CrO
x
bridges across a thin native chromium oxide barrier between the nanodots and an underlying metallic Cr layer. The existence of these nanoscale conducting filaments is verified by transmission electron microscopy and contact resistance measurements. Their conductance was interrogated optically, revealing quantised relative transmission of light through the heterostructures across a wavelength range of 1–12 μm. Such plasmon-induced electrochemical processes open up new possibilities for the development of scalable devices governed by light.
Journal Article
Ubiquitin chain conformation regulates recognition and activity of interacting proteins
by
Zhukov, Alexander A
,
Ruedas-Rama, Maria J
,
Blaser, Georg
in
Molecular structure
,
Observations
,
Properties
2012
Mechanisms of protein recognition have been extensively studied for single-domain proteins (1), but are less well characterized for dynamic multidomain systems. Ubiquitin chains represent a biologically important multidomain system that requires recognition by structurally diverse ubiquitin-interacting proteins (2,3). Ubiquitin chain conformations in isolation are often different from conformations observed in ubiquitin-interacting protein complexes, indicating either great dynamic flexibility or extensive chain remodelling upon binding. Using single-molecule fluorescence resonance energy transfer, we show that Lys63-, Lys48- and Met 1-linked diubiquitin exist in several distinct conformational states in solution. Lys 63- and Met 1-linked diubiquitin adopt extended 'open' and more compact 'closed' conformations, and ubiquitin-binding domains and deubiquitinases (DUBs) select pre-existing conformations. By contrast, Lys 48-linked diubiquitin adopts predominantly compact conformations. DUBs directly recognize existing conformations, but may also remodel ubiquitin chains to hydrolyse the isopeptide bond. Disruption of the Lys 48-diubiquitin interface changes conformational dynamics and affects DUB activity. Hence, conformational equilibria in ubiquitin chains provide an additional layer of regulation in the ubiquitin system, and distinct conformations observed in differently linked polyubiquitin may contribute to the specificity of ubiquitin-interacting proteins.
Journal Article
High-Yield Production and Transfer of Graphene Flakes Obtained by Anodic Bonding
by
Eckmann, Axel
,
Zhukov, Alexander A
,
Casiraghi, Cinzia
in
Bonding
,
Carrier density
,
Charge transfer
2011
We report large-yield production of graphene flakes on glass by anodic bonding. Under optimum conditions, we counted several tens of flakes with lateral size around 20-30 {\\mu}m and few tens of flakes with larger size. 60-70% of the flakes have negligible D peak. We show that it is possible to easily transfer the flakes by wedging technique. The transfer on silicon does not damage graphene and lowers the doping. The charge mobility of the transferred flakes on silicon is of the order of 6000 cm^2/V s (at carrier concentration of 10^12 cm^-2), which is typical for devices prepared on this substrate with exfoliated graphene.
Topological phase singularities in atomically thin high-refractive-index materials
2022
Atomically thin transition metal dichalcogenides (TMDCs) present a promising platform for numerous photonic applications due to excitonic spectral features, possibility to tune their constants by external gating, doping, or light, and mechanical stability. Utilization of such materials for sensing or optical modulation purposes would require a clever optical design, as by itself the 2D materials can offer only a small optical phase delay – consequence of the atomic thickness. To address this issue, we combine films of 2D semiconductors which exhibit excitonic lines with the Fabry-Perot resonators of the standard commercial SiO
2
/Si substrate, in order to realize topological phase singularities in reflection. Around these singularities, reflection spectra demonstrate rapid phase changes while the structure behaves as a perfect absorber. Furthermore, we demonstrate that such topological phase singularities are ubiquitous for the entire class of atomically thin TMDCs and other high-refractive-index materials, making it a powerful tool for phase engineering in flat optics. As a practical demonstration, we employ PdSe
2
topological phase singularities for a refractive index sensor and demonstrate its superior phase sensitivity compared to typical surface plasmon resonance sensors.
The authors combine films of two-dimensional semiconductors, which exhibit excitonic spectral features, with SiO
2
/Si Fabry-Perot resonators in order to realize topological phase singularities in reflection. Around these singularities, the reflection spectra demonstrate rapid phase changes while the structure behaves as a perfect absorber.
Journal Article
Direct Experimental Demonstration of Bend-Induced Transformation of Magnetic Structure in Amorphous Microwires
by
Chizhik, Alexander
,
Zhukova, Valentina
,
Zhukov, Arcady
in
amorphous magnetic microwires
,
bending sensors
,
bending stress
2025
In the pursuit of active elements for bending and curvature sensors, magneto-optical investigations were performed on bent microwires. For the first time, local surface magnetization reversal curves were obtained from various sides of bent Co-rich and Fe-rich microwires. The observed differences in surface magnetization reversal behavior are directly attributed to the transverse distribution of internal mechanical stresses, which range from maximum tensile stress on the outer side of the bent sample to maximum compressive stress on the inner side. Depending on the sample composition and the nature of local stress, distinct magnetic structures—axial, elliptical, and spiral—were identified in different locations on the surface of the microwire. These findings provide valuable insights into the operational mechanisms of bending-sensitive magnetic sensors.
Journal Article
Advanced Fitting Method for the Kinetic Analysis of Thermogravimetric Data
by
Bondarchuk, Ivan
,
Vorozhtsov, Alexander
,
Bondarchuk, Sergey
in
Accuracy
,
Approximation
,
Chemical reaction, Rate of
2023
The article considered the solution of the inverse problem of chemical kinetics of the analysis of experimental data of a thermogravimetric experiment at a constant sample heating rate. The fitting method for identifying the parameters of a kinetic triplet using the integral method for a model of a solid-state reaction based on the modified Arrhenius equation is described. The effectiveness of the proposed approach was confirmed by solving test cases for low, medium, and high rates of material conversion. Unlike other methods, setting the parameters of the reaction mechanism is not required, as they are determined by the solution. Solutions for real data of TGA studies with high and low sample heating rates were compared with the results obtained by other authors and experimental data. A description of the full cycle of calculations used to identify kinetic parameters from thermogravimetric experimental data is given, from the derivation of calculated relationships to the implementation of a short (three to five formulas) program code for MS Excel spreadsheets. The presented code is easy to verify and reproduce and can be modified to solve various problems.
Journal Article
Theory and methods for assessing technogenic impact on the environment of northwestern Siberia
2024
In addition to the efforts of over 130 countries to attain carbon neutrality, it is crucial to acknowledge that these nations collectively account for a substantial portion of worldwide greenhouse gas emissions, global GDP, and population. While the transition towards renewable energy sources is gaining momentum, it is important to recognize that traditional energy sources will remain significant contributors to the global energy supply for many years to come, particularly in developing nations. These countries often face challenges in terms of infrastructure, technology, and financial resources, making it difficult to completely, abandon conventional energy sources in the short term. Russia, a major global player, has recently joined the movement towards carbon neutrality.
Journal Article