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26 result(s) for "Zimba, Paul V."
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Testing an Iron Oxide Nanoparticle-Based Method for Magnetic Separation of Nanoplastics and Microplastics from Water
Nanoplastic pollution is increasing worldwide and poses a threat to humans, animals, and ecological systems. High-throughput, reliable methods for the isolation and separation of NMPs from drinking water, wastewater, or environmental bodies of water are of interest. We investigated iron oxide nanoparticles (IONPs) with hydrophobic coatings to magnetize plastic particulate waste for removal. We produced and tested IONPs synthesized using air-free conditions and in atmospheric air, coated with several polydimethylsiloxane (PDMS)-based hydrophobic coatings. Particles were characterized with scanning electron microscopy (SEM), transmission electron microscopy (TEM), superconducting quantum interference device (SQUID) magnetometry, dynamic light scattering (DLS), X-ray diffraction (XRD) and zeta potential. The IONPs synthesized in air contained a higher percentage of the magnetic spinel phase and stronger magnetization. Binding and recovery of NMPs from both salt and freshwater samples was demonstrated. Specifically, we were able to remove 100% of particles in a range of sizes, from 2–5 mm, and nearly 90% of nanoplastic particles with a size range from 100 nm to 1000 nm using a simple 2-inch permanent NdFeB magnet. Magnetization of NMPs using IONPs is a viable method for separation from water samples for quantification, characterization, and purification and remediation of water.
Extracting Impervious Surface from Aerial Imagery Using Semi-Automatic Sampling and Spectral Stability
The quantification of impervious surface through remote sensing provides critical information for urban planning and environmental management. The acquisition of quality reference data and the selection of effective predictor variables are two factors that contribute to the low accuracies of impervious surface in urban remote sensing. A hybrid method was developed to improve the extraction of impervious surface from high-resolution aerial imagery. This method integrates ancillary datasets from OpenStreetMap, National Wetland Inventory, and National Cropland Data to generate training and validation samples in a semi-automatic manner, significantly reducing the effort of visual interpretation and manual labeling. Satellite-derived surface reflectance stability is incorporated to improve the separation of impervious surface from other land cover classes. This method was applied to 1-m National Agriculture Imagery Program (NAIP) imagery of three sites with different levels of land development and data availability. Results indicate improved extractions of impervious surface with user’s accuracies ranging from 69% to 90% and producer’s accuracies from 88% to 95%. The results were compared to the 30-m percent impervious surface data of the National Land Cover Database, demonstrating the potential of this method to validate and complement satellite-derived medium-resolution datasets of urban land cover and land use.
A New Pseudoinvariant Near-Infrared Threshold Method for Relative Radiometric Correction of Aerial Imagery
The utilization of high-resolution aerial imagery such as the National Agriculture Imagery Program (NAIP) data is often hampered by a lack of methods for retrieving surface reflectance from digital numbers. This study developed a new relative radiometric correction method to retrieve 1 m surface reflectance from NAIP imagery. The advantage of this method lies in the adaptive identification of pseudoinvariant (PIV) pixels from a time series of Landsat images that can fully characterize the temporally spectral variations of land surface. The identified PIV pixels allow for an effective conversion of digital numbers to surface reflectance, as demonstrated through the validation at 150 sites across the contiguous United States. The results show substantial improvement in the agreement of NAIP-derived normalized difference vegetation index (NDVI) values with Landsat-derived NDVI reference. Across the sites, root mean square error and mean absolute error were reduced from 0.37 ± 0.14 to 0.08 ± 0.07 and from 0.91 ± 0.64 to 0.18 ± 0.52, respectively. Over 70% PIV pixels on average were derived from vegetated areas, while water and developed areas together contributed 27% of the PIV pixels. As the NAIP program is continuing to generate new images across the country, the advantages of its high spatial resolution, national coverage, long time series, and regular revisits will make it an increasingly crucial data source for a variety of research and management applications. The proposed method could benefit many agricultural, hydrological, and urban studies that rely on NAIP imagery to quantify land surface patterns and dynamics. It could also be applied to improve the preprocessing of high-resolution aerial imagery in other countries.
Resolving Mixed Algal Species in Hyperspectral Images
We investigated a lab-based hyperspectral imaging system’s response from pure (single) and mixed (two) algal cultures containing known algae types and volumetric combinations to characterize the system’s performance. The spectral response to volumetric changes in single and combinations of algal mixtures with known ratios were tested. Constrained linear spectral unmixing was applied to extract the algal content of the mixtures based on abundances that produced the lowest root mean square error. Percent prediction error was computed as the difference between actual percent volumetric content and abundances at minimum RMS error. Best prediction errors were computed as 0.4%, 0.4% and 6.3% for the mixed spectra from three independent experiments. The worst prediction errors were found as 5.6%, 5.4% and 13.4% for the same order of experiments. Additionally, Beer-Lambert’s law was utilized to relate transmittance to different volumes of pure algal suspensions demonstrating linear logarithmic trends for optical property measurements.
Trichophycin A, a Cytotoxic Linear Polyketide Isolated from a Trichodesmium thiebautii Bloom
In an effort to isolate and characterize bioactive secondary metabolites from Trichodesmium thiebautii blooms, collected cyanobacteria biomass was subjected to bioassay-guided extraction and fractionation using the human colon cancer cell line HCT-116, resulting in the isolation and subsequent structure characterization of a linear polyketide trichophycin A (1). The planar structure of 1 was completed using 1D and 2D NMR spectroscopy and high-resolution electrospray ionization mass spectrometry (HRESIMS). Trichophycin A was moderately toxic against the murine neuroblastoma cell line Neuro-2A (EC50: 6.5 μM) and HCT-116 cells (EC50: 11.7 μM). Trichophycin A was significantly more cytotoxic than the previously isolated polyketides trichotoxin A and trichotoxin B. These cytotoxicity observations suggest that toxicity may be related to the polyol character of these polyketide compounds.
A Multiplex Analysis of Potentially Toxic Cyanobacteria in Lake Winnipeg during the 2013 Bloom Season
Lake Winnipeg (Manitoba, Canada), the world’s 12th largest lake by area, is host to yearly cyanobacterial harmful algal blooms (cHABs) dominated by Aphanizomenon and Dolichospermum. cHABs in Lake Winnipeg are primarily a result of eutrophication but may be exacerbated by the recent introduction of dreissenid mussels. Through multiple methods to monitor the potential for toxin production in Lake Winnipeg in conjunction with environmental measures, this study defined the baseline composition of a Lake Winnipeg cHAB to measure potential changes because of dreissenid colonization. Surface water samples were collected in 2013 from 23 sites during summer and from 18 sites in fall. Genetic data and mass spectrometry cyanotoxin profiles identified microcystins (MC) as the most abundant cyanotoxin across all stations, with MC concentrations highest in the north basin. In the fall, mcyA genes were sequenced to determine which species had the potential to produce MCs, and 12 of the 18 sites were a mix of both Planktothrix and Microcystis. Current blooms in Lake Winnipeg produce low levels of MCs, but the capacity to produce cyanotoxins is widespread across both basins. If dreissenid mussels continue to colonize Lake Winnipeg, a shift in physicochemical properties of the lake because of faster water column clearance rates may yield more toxic blooms potentially dominated by microcystin producers.
Preliminary Assessment of Microbial Community Structure of Wind-Tidal Flats in the Laguna Madre, Texas, USA
Aside from two samples collected nearly 50 years ago, little is known about the microbial composition of wind tidal flats in the hypersaline Laguna Madre, Texas. These mats account for ~42% of the lagoon’s area. These microbial communities were sampled at four locations that historically had mats in the Laguna Madre, including Laguna Madre Field Station (LMFS), Nighthawk Bay (NH), and two locations in Kenedy Ranch (KRN and KRS). Amplicon sequencing of 16S genes determined the presence of 51 prokaryotic phyla dominated by Bacteroidota, Chloroflexi, Cyanobacteria, Desulfobacteria, Firmicutes, Halobacteria, and Proteobacteria. The microbial community structure of NH and KR is significantly different to LMFS, in which Bacteroidota and Proteobacteria were most abundant. Twenty-three cyanobacterial taxa were identified via genomic analysis, whereas 45 cyanobacterial taxa were identified using morphological analysis, containing large filamentous forms on the surface, and smaller, motile filamentous and coccoid forms in subsurface mat layers. Sample sites were dominated by species in Oscillatoriaceae (i.e., Lyngbya) and Coleofasciculaceae (i.e., Coleofasciculus). Most cyanobacterial sequences (~35%) could not be assigned to any established taxa at the family/genus level, given the limited knowledge of hypersaline cyanobacteria. A total of 73 cyanobacterial bioactive metabolites were identified using ultra performance liquid chromatography-Orbitrap MS analysis from these commu nities. Laguna Madre seems unique compared to other sabkhas in terms of its microbiology.
Tricholides A and B and Unnarmicin D: New Hybrid PKS-NRPS Macrocycles Isolated from an Environmental Collection of Trichodesmium thiebautii
Bioassay-guided isolation of the lipophilic extract of Trichodesmium thiebautii bloom material led to the purification and structure characterization of two new hybrid polyketide-non-ribosomal peptide (PKS-NRPS) macrocyclic compounds, tricholides A and B (1 and 2). A third macrocyclic compound, unnarmicin D (3), was identified as a new depsipeptide in the unnarmicin family, given its structural similarity to the existing compounds in this group. The planar structures of 1–3 were determined using 1D and 2D NMR spectra and complementary spectroscopic and spectrometric procedures. The absolute configurations of the amino acid components of 1–3 were determined via acid hydrolysis, derivitization with Marfey’s reagent and HPLC-UV comparison to authentic amino acid standards. The absolute configuration of the 3-hydroxydodecanoic acid moiety in 3 was determined using a modified Mosher’s esterification procedure on a linear derivative of tricharmicin (4) and additionally by a comparison of 13C NMR shifts of 3 to known depsipeptides with β-hydroxy acid subunits. Tricholide B (2) showed moderate cytotoxicity to Neuro-2A murine neuroblastoma cells (EC50: 14.5 ± 6.2 μM).
Controlling formation of metal ion adducts and enhancing sensitivity in Liquid Chromatography Mass Spectrometry
Formation of metal ion adducts in mass spectrometry, particularly in electrospray ionization liquid chromatography mass spectrometry (ESI-LC-MS), is a nightmare scenario for an analyst dealing with quantitative analysis. We have studied in detail the metal adduct formation and concluded  that the use of fluorinated alkanoic acids along with formic acid and volatile ammonium salts was extremely useful in suppressing metal adduct formation in positive ion mode of ESI-LC-MS. The extremely high electronegativity of fluorine atom and unique electrostatic nature of C—F bond coupled with stereo-electronic interactions with neighboring bonds or lone pairs enables the polyfluorinated alkanoic acids in trapping highly electropositive ions (Na+, K+) thereby letting proton do its job efficiently. Addition of formic acid, trifluoroacetic acid, heptafluorobutyric acid and ammonium acetate was found to be extremely effective in controlling metal ion adducts and producing [M+H]+ ions almost exclusively resulting in significant increase in the sensitivity. This technique has been successfully used in our laboratory for the estimation of targeted and nontargeted analysis of pesticides, marine toxins, drugs and pharmaceuticals etc. in various matrices including environmental waters using liquid chromatography-time of flight mass spectrometer operated in all ion acquisition mode and triple quadruples (QQQ) in multiple reaction monitoring (MRM) mode.
Hydrogen peroxide, an ecofriendly remediation method for controlling Microcystis aeruginosa toxic blooms
In February 2017, a Microcystis aeruginosa bloom (maximum 55 μg L−1 chl a and microcystin concentration of 40 μg L−1) occurred in a freshwater pond in Padre Island National Seashore (PINS), TX, USA, causing mortality of migratory redhead ducks and local animals. To treat the pond without further damage to the ecosystem, we proposed the use of H2O2. A nomograph of H2O2 required for oxidizing different initial cyanobacterial biomass levels to achieve desired final microcystin and chl a concentration was developed. With a chl a concentration > 50 μg L−1, the nomograph predicted > 97% removal efficiency when 50 mg L−1 peroxide was used. Then, an outdoor mesocosm experiment with four treatment levels (0, 10, 50 mg L−1 H2O2 and 10 mg L−1 H2O2 with ultrasonication) was tested. In the mesocosm experiment, discrete samples were assessed for cell morphology, pigment, and microcystin toxin content (n = 3) at six different time intervals during the 48-h treatment period. Cell morphology was affected after 4-h exposure at 50 mg L−1 H2O2 treatment. Overall, > 75% of microcystin and > 80% of chl a were destroyed after 48-h exposure to 50 mg L−1 H2O2. The pond was treated with 10 mg L−1 H2O2 which reduced chl a by 60% and microcystin by 35% after 2 days. Control of the cyanobacterial bloom using H2O2 was effective in lab and mesocosm experiments, but the cyanobacterial bloom recovered at PINS 2 weeks after the treatment. The recovery resulted from an insufficient H2O2 addition, identifying a need to re-evaluate current protocols. Overall, no residual H2O2 were detected in any scales of treatment.