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result(s) for
"van Dam, Elsbeth A."
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Disentangling rodent behaviors to improve automated behavior recognition
by
Noldus, Lucas P. J. J.
,
Van Gerven, Marcel A. J.
,
Van Dam, Elsbeth A.
in
Accuracy
,
action recognition
,
Animals
2023
Automated observation and analysis of behavior is important to facilitate progress in many fields of science. Recent developments in deep learning have enabled progress in object detection and tracking, but rodent behavior recognition struggles to exceed 75–80% accuracy for ethologically relevant behaviors. We investigate the main reasons why and distinguish three aspects of behavior dynamics that are difficult to automate. We isolate these aspects in an artificial dataset and reproduce effects with the state-of-the-art behavior recognition models. Having an endless amount of labeled training data with minimal input noise and representative dynamics will enable research to optimize behavior recognition architectures and get closer to human-like recognition performance for behaviors with challenging dynamics.
Journal Article
Measuring Behavior in the Home Cage: Study Design, Applications, Challenges, and Perspectives
2021
The reproducibility crisis (or replication crisis) in biomedical research is a particularly existential and under-addressed issue in the field of behavioral neuroscience, where, in spite of efforts to standardize testing and assay protocols, several known and unknown sources of confounding environmental factors add to variance. Human interference is a major contributor to variability both within and across laboratories, as well as novelty-induced anxiety. Attempts to reduce human interference and to measure more \"natural\" behaviors in subjects has led to the development of automated home-cage monitoring systems. These systems enable prolonged and longitudinal recordings, and provide large continuous measures of spontaneous behavior that can be analyzed across multiple time scales. In this review, a diverse team of neuroscientists and product developers share their experiences using such an automated monitoring system that combines Noldus PhenoTyper ® home-cages and the video-based tracking software, EthoVision ® XT, to extract digital biomarkers of motor, emotional, social and cognitive behavior. After presenting our working definition of a “home-cage”, we compare home-cage testing with more conventional out-of-cage tests (e.g., the open field) and outline the various advantages of the former, including opportunities for within-subject analyses and assessments of circadian and ultradian activity. Next, we address technical issues pertaining to the acquisition of behavioral data, such as the fine-tuning of the tracking software and the potential for integration with biotelemetry and optogenetics. Finally, we provide guidance on which behavioral measures to emphasize, how to filter, segment, and analyze behavior, and how to use analysis scripts. We summarize how the PhenoTyper has applications to study neuropharmacology as well as animal models of neurodegenerative and neuropsychiatric illness. Looking forward, we examine current challenges and the impact of new developments. Examples include the automated recognition of specific behaviors, unambiguous tracking of individuals in a social context, the development of more animal-centered measures of behavior and ways of dealing with large datasets. Together, we advocate that by embracing standardized home-cage monitoring platforms like the PhenoTyper, we are poised to directly assess issues pertaining to reproducibility, and more importantly, measure features of rodent behavior under more ethologically relevant scenarios.
Journal Article
Improving Real-Life Estimates of Emotion Based on Heart Rate: A Perspective on Taking Metabolic Heart Rate Into Account
by
Spangler, Derek P.
,
van Dam, Elsbeth
,
Brooks, Justin R.
in
accelerometry
,
additional heart rate
,
affective computing
2018
Extracting information about emotion from heart rate in real life is challenged by the concurrent effect of physical activity on heart rate caused by metabolic need. \"Non-metabolic heart rate,\" which refers to the heart rate that is caused by factors other than physical activity, may be a more sensitive and more universally applicable correlate of emotion than heart rate itself. The aim of the present article is to explore the evidence that non-metabolic heart rate, as it has been determined up until now, indeed reflects emotion. We focus on methods using accelerometry since these sensors are readily available in devices suitable for daily life usage. The evidence that non-metabolic heart rate as determined by existing methods reflect emotion is limited. Alternative possible routes are explored. We conclude that for real-life cases, estimating the type and intensity of activities based on accelerometry (and other information), and in turn use those to determine the non-metabolic heart rate for emotion is most promising.
Journal Article
Reproducibility via coordinated standardization: a multi-center study in a S hank2 genetic rat model for Autism Spectrum Disorders
by
Graf, Radka
,
Wil van Dommelen
,
Biemans, Barbara
in
Autism
,
Glutamic acid receptors (metabotropic)
,
Laboratories
2019
Inconsistent findings between laboratories are hampering scientific progress and are of increasing public concern. Differences in laboratory environment is a known factor contributing to poor reproducibility of findings between research sites, and well-controlled multisite efforts are an important next step to identify the relevant factors needed to reduce variation in study outcome between laboratories. Through harmonization of apparatus, test protocol, and aligned and non-aligned environmental variables, the present study shows that behavioral pharmacological responses in Shank2 knockout (KO) rats, a model of synaptic dysfunction relevant to autism spectrum disorders, were highly replicable across three research centers. All three sites reliably observed a hyperactive and repetitive behavioral phenotype in KO rats compared to their wild-type littermates as well as a dose-dependent phenotype attenuation following acute injections of a selective mGluR1 antagonist. These results show that reproducibility in preclinical studies can be obtained and emphasizes the need for high quality and rigorous methodologies in scientific research. Considering the observed external validity, the present study also suggests mGluR1 as potential target for the treatment of autism spectrum disorders.
Journal Article
Reproducibility via coordinated standardization: a multi-center study in a Shank2 genetic rat model for Autism Spectrum Disorders
2019
Inconsistent findings between laboratories are hampering scientific progress and are of increasing public concern. Differences in laboratory environment is a known factor contributing to poor reproducibility of findings between research sites, and well-controlled multisite efforts are an important next step to identify the relevant factors needed to reduce variation in study outcome between laboratories. Through harmonization of apparatus, test protocol, and aligned and non-aligned environmental variables, the present study shows that behavioral pharmacological responses in
Shank2
knockout (KO) rats, a model of synaptic dysfunction relevant to autism spectrum disorders, were highly replicable across three research centers. All three sites reliably observed a hyperactive and repetitive behavioral phenotype in KO rats compared to their wild-type littermates as well as a dose-dependent phenotype attenuation following acute injections of a selective mGluR1 antagonist. These results show that reproducibility in preclinical studies can be obtained and emphasizes the need for high quality and rigorous methodologies in scientific research. Considering the observed external validity, the present study also suggests mGluR1 as potential target for the treatment of autism spectrum disorders.
Journal Article
Multitask Learning to Improve Egocentric Action Recognition
2019
In this work we employ multitask learning to capitalize on the structure that exists in related supervised tasks to train complex neural networks. It allows training a network for multiple objectives in parallel, in order to improve performance on at least one of them by capitalizing on a shared representation that is developed to accommodate more information than it otherwise would for a single task. We employ this idea to tackle action recognition in egocentric videos by introducing additional supervised tasks. We consider learning the verbs and nouns from which action labels consist of and predict coordinates that capture the hand locations and the gaze-based visual saliency for all the frames of the input video segments. This forces the network to explicitly focus on cues from secondary tasks that it might otherwise have missed resulting in improved inference. Our experiments on EPIC-Kitchens and EGTEA Gaze+ show consistent improvements when training with multiple tasks over the single-task baseline. Furthermore, in EGTEA Gaze+ we outperform the state-of-the-art in action recognition by 3.84%. Apart from actions, our method produces accurate hand and gaze estimations as side tasks, without requiring any additional input at test time other than the RGB video clips.
Egocentric Hand Track and Object-based Human Action Recognition
by
Poppe, Ronald
,
Kapidis, Georgios
,
Veltkamp, Remco C
in
Computer vision
,
Feature recognition
,
Hands
2019
Egocentric vision is an emerging field of computer vision that is characterized by the acquisition of images and video from the first person perspective. In this paper we address the challenge of egocentric human action recognition by utilizing the presence and position of detected regions of interest in the scene explicitly, without further use of visual features. Initially, we recognize that human hands are essential in the execution of actions and focus on obtaining their movements as the principal cues that define actions. We employ object detection and region tracking techniques to locate hands and capture their movements. Prior knowledge about egocentric views facilitates hand identification between left and right. With regard to detection and tracking, we contribute a pipeline that successfully operates on unseen egocentric videos to find the camera wearer's hands and associate them through time. Moreover, we emphasize on the value of scene information for action recognition. We acknowledge that the presence of objects is significant for the execution of actions by humans and in general for the description of a scene. To acquire this information, we utilize object detection for specific classes that are relevant to the actions we want to recognize. Our experiments are targeted on videos of kitchen activities from the Epic-Kitchens dataset. We model action recognition as a sequence learning problem of the detected spatial positions in the frames. Our results show that explicit hand and object detections with no other visual information can be relied upon to classify hand-related human actions. Testing against methods fully dependent on visual features, signals that for actions where hand motions are conceptually important, a region-of-interest-based description of a video contains equally expressive information with comparable classification performance.
Opinions on migrants and migration policy in the Netherlands in a European perspective
2001
Indagini condotte in Olanda mostrano che, oltre alla conoscenza, l'esperienza individuale è determinante nella formazione dell'atteggiamento verso lo straniero. I più giovani, meglio istruiti, residenti nelle maggiori aree urbane del paese appaiono più tolleranti verso lo straniero. L'indagine in cinque paesi europei non ha chiarito in quale misura l'esperienza migratoria, le vicende culturali e la storia di un paese influenzano la formazione delle opinioni. La concentrazione di stranieri solo parzialmente spiega divergenze nelle opinioni. Le differenze nel livello di conoscenza, mediate dal modo in cui i mass media affrontano l'argomento, costituiscono probabilmente un altro fattore esplicativo. È probabile che una maggior esperienza con l'immigrazione influenzi gli atteggiamenti in modo diverso dalla conoscenza quantitativa del fenomeno. Dutch surveys support the hypothesis that in addition to knowledge, personal experience is instrumental to attitude formation towards foreigners. Younger people, better educated people, and inhabitants of the largest cities in the Netherlands show a more tolerant attitude towards foreigners. The survey in five European countries does not make clear to what extent culture or migration tradition and history additionally influence formation of opinions. Concentration of foreigners partly explains differences in opinions. Differences in levels of knowledge, partly induced by the way in which the subject is treated in the mass media, probably is another explanatory factor. It is plausible that more experience with the phenomenon of foreign migrants affects attitudes in a way separate from knowledge. Enquêtes menées en Hollande montrent que la formation de l'attitude envers l'étranger dépend non seulement de la connaissance mais aussi de l'expérience personnelle. Les gens plus jeunes, plus instruits, habitant les principales zones urbaines du pays affichent une attitude plus tolérante envers l'étranger. L'enquête menée dans cinq pays européens n'éclaire pas la question de savoir dans quelle mesure l'expérience migratoire, les événements culturels et l'histoire d'un pays influencent la formation des opinions. La concentration des étrangers n'explique qu'en partie les divergences d'opinions. Les différences dans le niveau de connaissance, influencées par la façon dans les médias traitent cette question, constituent probablement un autre facteur explicatif. Il est probable qu'une expérience plus approfondie de l'immigration influence les attitudes d'une manière qui diffère de la connaissance purement quantitative de ce phénomène.
Journal Article