Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
110
result(s) for
"van Sebille, Erik"
Sort by:
Parcels v0.9: prototyping a Lagrangian ocean analysis framework for the petascale age
2017
As ocean general circulation models (OGCMs) move into the petascale age, where the output of single simulations exceeds petabytes of storage space, tools to analyse the output of these models will need to scale up too. Lagrangian ocean analysis, where virtual particles are tracked through hydrodynamic fields, is an increasingly popular way to analyse OGCM output, by mapping pathways and connectivity of biotic and abiotic particulates. However, the current software stack of Lagrangian ocean analysis codes is not dynamic enough to cope with the increasing complexity, scale and need for customization of use-cases. Furthermore, most community codes are developed for stand-alone use, making it a nontrivial task to integrate virtual particles at runtime of the OGCM. Here, we introduce the new Parcels code, which was designed from the ground up to be sufficiently scalable to cope with petascale computing. We highlight its API design that combines flexibility and customization with the ability to optimize for HPC workflows, following the paradigm of domain-specific languages. Parcels is primarily written in Python, utilizing the wide range of tools available in the scientific Python ecosystem, while generating low-level C code and using just-in-time compilation for performance-critical computation. We show a worked-out example of its API, and validate the accuracy of the code against seven idealized test cases. This version 0.9 of Parcels is focused on laying out the API, with future work concentrating on support for curvilinear grids, optimization, efficiency and at-runtime coupling with OGCMs.
Journal Article
A global inventory of small floating plastic debris
2015
Microplastic debris floating at the ocean surface can harm marine life. Understanding the severity of this harm requires knowledge of plastic abundance and distributions. Dozens of expeditions measuring microplastics have been carried out since the 1970s, but they have primarily focused on the North Atlantic and North Pacific accumulation zones, with much sparser coverage elsewhere. Here, we use the largest dataset of microplastic measurements assembled to date to assess the confidence we can have in global estimates of microplastic abundance and mass. We use a rigorous statistical framework to standardize a global dataset of plastic marine debris measured using surface-trawling plankton nets and coupled this with three different ocean circulation models to spatially interpolate the observations. Our estimates show that the accumulated number of microplastic particles in 2014 ranges from 15 to 51 trillion particles, weighing between 93 and 236 thousand metric tons, which is only approximately 1% of global plastic waste estimated to enter the ocean in the year 2010. These estimates are larger than previous global estimates, but vary widely because the scarcity of data in most of the world ocean, differences in model formulations, and fundamental knowledge gaps in the sources, transformations and fates of microplastics in the ocean.
Journal Article
All is not lost: deriving a top-down mass budget of plastic at sea
by
Koelmans, Albert A
,
van Sebille, Erik
,
Kooi, Merel
in
Abundance
,
Aquatic Ecology and Water Quality Management
,
Aquatische Ecologie en Waterkwaliteitsbeheer
2017
Understanding the global mass inventory is one of the main challenges in present research on plastic marine debris. Especially the fragmentation and vertical transport processes of oceanic plastic are poorly understood. However, whereas fragmentation rates are unknown, information on plastic emissions, concentrations of plastics in the ocean surface layer (OSL) and fragmentation mechanisms is available. Here, we apply a systems engineering analytical approach and propose a tentative 'whole ocean' mass balance model that combines emission data, surface area-normalized plastic fragmentation rates, estimated concentrations in the OSL, and removal from the OSL by sinking. We simulate known plastic abundances in the OSL and calculate an average whole ocean apparent surface area-normalized plastic fragmentation rate constant, given representative radii for macroplastic and microplastic. Simulations show that 99.8% of the plastic that had entered the ocean since 1950 had settled below the OSL by 2016, with an additional 9.4 million tons settling per year. In 2016, the model predicts that of the 0.309 million tons in the OSL, an estimated 83.7% was macroplastic, 13.8% microplastic, and 2.5% was < 0.335 mm 'nanoplastic'. A zero future emission simulation shows that almost all plastic in the OSL would be removed within three years, implying a fast response time of surface plastic abundance to changes in inputs. The model complements current spatially explicit models, points to future experiments that would inform critical model parameters, and allows for further validation when more experimental and field data become available.
Journal Article
Measuring Marine Plastic Debris from Space: Initial Assessment of Observation Requirements
by
Cole, Matthew
,
Raimondi, Valentina
,
Simis, Stefan G.H.
in
Debris
,
Detritus
,
high spatial resolution
2019
Sustained observations are required to determine the marine plastic debris mass balance and to support effective policy for planning remedial action. However, observations currently remain scarce at the global scale. A satellite remote sensing system could make a substantial contribution to tackling this problem. Here, we make initial steps towards the potential design of such a remote sensing system by: (1) identifying the properties of marine plastic debris amenable to remote sensing methods and (2) highlighting the oceanic processes relevant to scientific questions about marine plastic debris. Remote sensing approaches are reviewed and matched to the optical properties of marine plastic debris and the relevant spatio-temporal scales of observation to identify challenges and opportunities in the field. Finally, steps needed to develop marine plastic debris detection by remote sensing platforms are proposed in terms of fundamental science as well as linkages to ongoing planning for satellite systems with similar observation requirements.
Journal Article
Plastics in sea surface waters around the Antarctic Peninsula
by
Rodrigues, Fábio L.
,
Lacerda, Ana L. d. F.
,
Secchi, Eduardo R.
in
704/172/4081
,
704/829
,
Algae
2019
Although marine plastic pollution has been the focus of several studies, there are still many gaps in our understanding of the concentrations, characteristics and impacts of plastics in the oceans. This study aimed to quantify and characterize plastic debris in oceanic surface waters of the Antarctic Peninsula. Sampling was done through surface trawls, and mean debris concentration was estimated at 1,794 items.km
−2
with an average weight of 27.8 g.km
−2
. No statistical difference was found between the amount of mesoplastics (46%) and microplastics (54%). We found hard and flexible fragments, spheres and lines, in nine colors, composed mostly of polyurethane, polyamide, and polyethylene. An oceanographic dispersal model showed that, for at least seven years, sampled plastics likely did not originate from latitudes lower than 58°S. Analysis of epiplastic community diversity revealed bacteria, microalgae, and invertebrate groups adhered to debris. Paint fragments were present at all sampling stations and were approximately 30 times more abundant than plastics. Although paint particles were not included in plastic concentration estimates, we highlight that they could have similar impacts as marine plastics. We call for urgent action to avoid and mitigate plastic and paint fragment inputs to the Southern Ocean.
Journal Article
Beaching patterns of plastic debris along the Indian Ocean rim
2020
A large percentage of global ocean plastic waste enters the Northern Hemisphere Indian Ocean (NIO). Despite this, it is unclear what happens to buoyant plastics in the NIO. Because the subtropics in the NIO are blocked by landmass, there is no subtropical gyre and no associated subtropical garbage patch in this region. We therefore hypothesize that plastics “beach” and end up on coastlines along the Indian Ocean rim. In this paper, we determine the influence of beaching plastics by applying different beaching conditions to Lagrangian particle-tracking simulation results. Our results show that a large amount of plastic likely ends up on coastlines in the NIO, while some crosses the Equator into the Southern Hemisphere Indian Ocean (SIO). In the NIO, the transport of plastics is dominated by seasonally reversing monsoonal currents, which transport plastics back and forth between the Arabian Sea and the Bay of Bengal. All buoyant plastic material in this region beaches within a few years in our simulations. Countries bordering the Bay of Bengal are particularly heavily affected by plastics beaching on coastlines. This is a result of both the large sources of plastic waste in the region and the ocean dynamics that concentrate plastics in the Bay of Bengal. During the intermonsoon period following the southwest monsoon season (September, October, November), plastics can cross the Equator on the eastern side of the NIO basin into the SIO. Plastics that escape from the NIO into the SIO beach on eastern African coastlines and islands in the SIO or enter the subtropical SIO garbage patch.
Journal Article
Empirical Lagrangian parametrization for wind-driven mixing of buoyant particles at the ocean surface
by
Laufkötter, Charlotte
,
Onink, Victor
,
Erik van Sebille
in
Buoyancy
,
Diffusion
,
Diffusion coefficient
2022
Turbulent mixing is a vital component of vertical particulate transport, but ocean global circulation models (OGCMs) generally have low-resolution representations of near-surface mixing. Furthermore, turbulence data are often not provided in OGCM model output. We present 1D parametrizations of wind-driven turbulent mixing in the ocean surface mixed layer that are designed to be easily included in 3D Lagrangian model experiments. Stochastic transport is computed by Markov-0 or Markov-1 models, and we discuss the advantages and disadvantages of two vertical profiles for the vertical diffusion coefficient Kz. All vertical diffusion profiles and stochastic transport models lead to stable concentration profiles for buoyant particles, which for particles with rise velocities of 0.03 and 0.003 m s-1 agree relatively well with concentration profiles from field measurements of microplastics when Langmuir-circulation-driven turbulence is accounted for. Markov-0 models provide good model performance for integration time steps of Δt≈30 s and can be readily applied when studying the behavior of buoyant particulates in the ocean. Markov-1 models do not consistently improve model performance relative to Markov-0 models and require an additional parameter that is poorly constrained.
Journal Article
The Parcels v2.0 Lagrangian framework: new field interpolation schemes
by
Erik van Sebille
,
Delandmeter, Philippe
in
Biogeochemistry
,
Computational fluid dynamics
,
Continental shelves
2019
With the increasing number of data produced by numerical ocean models, so increases the need for efficient tools to analyse these data. One of these tools is Lagrangian ocean analysis, where a set of virtual particles is released and their dynamics are integrated in time based on fields defining the ocean state, including the hydrodynamics and biogeochemistry if available. This popular methodology needs to adapt to the large variety of models producing these fields at different formats.This is precisely the aim of Parcels, a Lagrangian ocean analysis framework designed to combine (1) a wide flexibility to model particles of different natures and (2) an efficient implementation in accordance with modern computing infrastructure. In the new Parcels v2.0, we implement a set of interpolation schemes to read various types of discretized fields, from rectilinear to curvilinear grids in the horizontal direction, from z to s levels in the vertical direction and using grid staggering with the Arakawa A, B and C grids. In particular, we develop a new interpolation scheme for a three-dimensional curvilinear C grid and analyse its properties.Parcels v2.0 capabilities, including a suite of meta-field objects, are then illustrated in a brief study of the distribution of floating microplastic in the northwest European continental shelf and its sensitivity to various physical processes.
Journal Article
Threat of plastic pollution to seabirds is global, pervasive, and increasing
by
Wilcox, Chris
,
Van Sebille, Erik
,
Hardesty, Britta Denise
in
Animals
,
Anthropogenic factors
,
Aquatic birds
2015
Plastic pollution in the ocean is a global concern; concentrations reach 580,000 pieces per km² and production is increasing exponentially. Although a large number of empirical studies provide emerging evidence of impacts to wildlife, there has been little systematic assessment of risk. We performed a spatial risk analysis using predicted debris distributions and ranges for 186 seabird species to model debris exposure. We adjusted the model using published data on plastic ingestion by seabirds. Eighty of 135 (59%) species with studies reported in the literature between 1962 and 2012 had ingested plastic, and, within those studies, on average 29% of individuals had plastic in their gut. Standardizing the data for time and species, we estimate the ingestion rate would reach 90% of individuals if these studies were conducted today. Using these results from the literature, we tuned our risk model and were able to capture 71% of the variation in plastic ingestion based on a model including exposure, time, study method, and body size. We used this tuned model to predict risk across seabird species at the global scale. The highest area of expected impact occurs at the Southern Ocean boundary in the Tasman Sea between Australia and New Zealand, which contrasts with previous work identifying this area as having low anthropogenic pressures and concentrations of marine debris. We predict that plastics ingestion is increasing in seabirds, that it will reach 99% of all species by 2050, and that effective waste management can reduce this threat.
Journal Article
Investigating microscale patchiness of motile microbes under turbulence in a simulated convective mixed layer
by
van Sebille, Erik
,
Christensen, Alexander Kier
,
Pawar, Samraat
in
Analysis
,
Aquatic ecosystems
,
Biogeochemical cycles
2022
Microbes play a primary role in aquatic ecosystems and biogeochemical cycles. Spatial patchiness is a critical factor underlying these activities, influencing biological productivity, nutrient cycling and dynamics across trophic levels. Incorporating spatial dynamics into microbial models is a long-standing challenge, particularly where small-scale turbulence is involved. Here, we combine a fully 3D direct numerical simulation of convective mixed layer turbulence, with an individual-based microbial model to test the key hypothesis that the coupling of gyrotactic motility and turbulence drives intense microscale patchiness. The fluid model simulates turbulent convection caused by heat loss through the fluid surface, for example during the night, during autumnal or winter cooling or during a cold-air outbreak. We find that under such conditions, turbulence-driven patchiness is depth-structured and requires high motility: Near the fluid surface, intense convective turbulence overpowers motility, homogenising motile and non-motile microbes approximately equally. At greater depth, in conditions analogous to a thermocline, highly motile microbes can be over twice as patch-concentrated as non-motile microbes, and can substantially amplify their swimming velocity by efficiently exploiting fast-moving packets of fluid. Our results substantiate the predictions of earlier studies, and demonstrate that turbulence-driven patchiness is not a ubiquitous consequence of motility but rather a delicate balance of motility and turbulent intensity.
Journal Article