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result(s) for
"线性判别分析"
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Label-free Detection for a DNA Methylation Assay Using Raman Spectroscopy
by
Jeongho Kim Hae Jeong Park Jae Hyung Kim Boksoon Chang Hun-Kuk Park
in
Biomarkers
,
Biomedical engineering
,
Brain cancer
2017
Background: DNA methylation has been suggested as a biomarker for early cancer detection and treatment. Varieties of technologies for detecting DNA methylation have been developed, but they are not sufficiently sensitive for use in diagnostic devices. The aim of this study was to determine the suitability of Raman spectroscopy for label-free detection of methylated DNA. Methods: The methylated promoter regions of cancer-related genes cadherin 1 (CDH1) and retinoic acid receptor beta (RARB) served as target DNA sequences. Based on bisulfite conversion, oligonucleotides ofmethylated or nonmethylated probes and targets were synthesized for the DNA methylation assay. Principal component analysis with linear discriminant analysis (PCA-DA) was used to discriminate the hybridization between probes and targets (methylated probe and methylated target or nonmethylated probe and nonmethylated target) of CDH! and RARB from nonhybridization between the probe and targets (methylated probe and nonmethylated target or nonmethylated probe and methylated target). Results: This study revealed that the CDH1 and RARB oligo sets and their hybridization data could be classified using PCA-DA. The classification results for CDH1 methylated probe + CDH1 methylated target versus CDH! methylated probe + CDHI unmethylated target showed sensitivity, specificity, and error rates of 92%, 100%, and 8%, respectively. The classification results for the RARB methylated probe + RARB methylated target versus RARB methylated probe + RARB unmethylated target showed sensitivity, specificity, and error rates of 92%, 93%, and 11%, respectively. Conclusions: Label-free detection ofDNA methylation could be achieved using Raman spectroscopy with discriminant analysis.
Journal Article
Near-infrared spectroscopy and chemometric modelling for rapid diagnosis of kidney disease
by
Mengli Fan Xiuwei Liu Xiaoming Yu Xiaoyu Cui Wensheng Cai Xueguang Shao
in
Chemistry
,
Chemistry and Materials Science
,
Chemistry/Food Science
2017
Rapid diagnosis is important for efficient treatment in clinical medicine.This study aimed at development of a method for rapid and reliable diagnosis using near-infrared(NIR)spectra of human serum samples with the help of chemometric modelling.The NIR spectra of sera from 48 healthy individuals and 16 patients with suspected kidney disease were analyzed.Discrete wavelet transform(DWT)and variable selection were adopted to extract the useful information from the spectra.Principal component analysis(PCA),linear discriminant analysis(LDA)and partial least squares discriminant analysis(PLSDA)were used for discrimination of the samples.Classification of the two-class sera was obtained using LDA and PLSDA with the help of DWT and variable selection.DWT-LDA produced 93.8%and 83.3%of the recognition rates for the validation samples of the two classes,and 100%recognition rates were obtained using DWT-PLSDA.The results demonstrated that the tiny differences between the spectra of the sera were effectively explored using DWT and variable selection,and the differences can be used for discrimination of the sera from healthy and possible patients.NIR spectroscopy and chemometrics may be a potential technique for fast diagnosis of kidney disease.
Journal Article
Robust face recognition against expressions and partial occlusions
by
Zaman, Fadhlan Kamaru
,
Mustafah, Yasir Mohd
,
Shafie, Amir Akramin
in
Discriminant analysis
,
Face recognition
,
Feature selection
2016
Facial features under variant-expressions and partial occlusions could have degrading effect on overall face recognition performance. As a solution, we suggest that the contribution of these features on final classification should be determined. In order to represent facial features’ contribution according to their variations, we propose a feature selection process that describes facial features as local independent component analysis (ICA) features. These local features are acquired using locally lateral subspace (LLS) strategy. Then, through linear discriminant analysis (LDA) we investigate the intraclass and interclass representation of each local ICA feature and express each feature’s contribution via a weighting process. Using these weights, we define the contribution of each feature at local classifier level. In order to recognize faces under single sample constraint, we implement LLS strategy on locally linear embedding (LLE) along with the proposed feature selection. Additionally, we highlight the efficiency of the implementation of LLS strategy. The overall accuracy achieved by our approach on datasets with different facial expressions and partial occlusions such as AR, JAFFE, FERET and CK+ is 90.70%. We present together in this paper survey results on face recognition performance and physiological feature selection performed by human subjects.
Journal Article
Face recognition by decision fusion of two-dimensional linear discriminant analysis and local binary pattern
by
Qicong WANG Binbin WANG Xinjie HAO Lisheng CHEN Jingmin CUI Rongrong JI Yunqi LEI
in
Algorithms
,
Computer Science
,
Decision analysis
2016
To investigate the robustness of face recognition algorithms under the complicated variations of illumination, facial expression and posture, the advantages and disadvantages of seven typical algorithms on extracting global and local features are studied through the experiments respectively on the Olivetti Research Laboratory database and the other three databases (the three subsets of illumination, expression and posture that are constructed by selecting images from several existing face databases). By taking the above experimental results into consideration, two schemes of face recognition which are based on the decision fusion of the twodimensional linear discriminant analysis (2DLDA) and local binary pattern (LBP) are proposed in this paper to heighten the recognition rates. In addition, partitioning a face nonuniformly for its LBP histograms is conducted to improve the performance. Our experimental results have shown the complementarities of the two kinds of features, the 2DLDA and LBP, and have verified the effectiveness of the proposed fusion algorithms.
Journal Article
Clustering Seismic Activities Using Linear and Nonlinear Discriminant Analysis
by
H Serdar Kuyuk Eray Yildirim Emrah Dogan Gunduz Horasan
in
Adjustment
,
Biogeosciences
,
Classification
2014
Identification and classification of different seismo-tectonic events with similar character- istics in a region of interest is one of the most important subjects in seismic hazard studies. In this study, linear and nonlinear discriminant analyses have been applied to classify seismic events in the vicinity of Istanbul. The vertical components of the digital velocity seismograms are used for seismic events with magnitude (Md) between 1.8 and 3.0 that occurred between 2001 and 2004. Two, time dependent pa- rameters, complexity and S/P peak amplitude ratio are selected as predictands. Linear, quadratic, diag- linear and diagquadratic discriminant functions are investigated. Accuracy of methods with an addi- tional adjusted quadratic models are 96.6%, 96.6%, 95.5%, 96.6%, and 97.6%, respectively with a vari- ous misclassified rate for each class. The performances of models are justified with cross validation and resubstitution error. Although all models remarkably well performed, adjusted quadratic function achieved the best success rate with just 4 misclassified events out of 179, even better compared to com- plex methods such as, self organizing method, k-means, Gaussion mixture models that applied to same dataset in literature.
Journal Article
Hazard and population vulnerability analysis: a step towards landsfide risk assessment
2017
In this paper, an attempt to analyse landslide hazard and vulnerability in the municipality of Pahuatlfin, Puebla, Mexico, is presented. In order to estimate landslide hazard, the susceptibility, magnitude (area-velocity ratio) and landslide frequency of the area of interest were produced based on information derived from a geomorphological landslide inventory; the latter was generated by using very high resolution satellite stereo pairs along with information derived from other sources (Google Earth, aerial photographs and historical information). Estimations of landslide susceptibility were determined by combining four statistical techniques: (i) logistic regression, (ii) quadratic discriminant analysis, (iii) linear discriminant analysis, and (iv) neuronal networks. A Digital Elevation Model (DEM) of lo m spatial resolution was used to extract the slope angle, aspect, curvature, elevation and relief. These factors, in addition to land cover, lithology anddistance to faults, were used as explanatory variables for the susceptibility models. Additionally, a Poisson model was used to estimate landslide temporal frequency, at the same time as landslide magnitude was obtained by using the relationship between landslide area and the velocity of movements. Then, due to the complexity of evaluating it, vulnerability of population was analysed by applying the Spatial Approach to Vulnerability Assessment (SAVE) model which considered levels of exposure, sensitivity and lack of resilience. Results were expressed on maps on which different spatial patterns of levels of landslide hazard and vulnerability were found for the inhabited areas. It is noteworthy that the lack of optimal methodologies to estimate and quantify vulnerability is more notorious than that of hazard assessments. Consequently, levels of uncertainty linked to landslide risk assessment remain a challenge to be addressed.
Journal Article
Linear discriminant analysis with worst between-class separation and average within-class compactness
Linear discriminant analysis (LDA) is one of the most popular supervised dimensionality reduction (DR) tech- niques and obtains discriminant projections by maximizing the ratio of average-case between-class scatter to average- case within-class scatter. Two recent discriminant analysis algorithms (DAS), minimal distance maximization (MDM) and worst-case LDA (WLDA), get projections by optimiz- ing worst-case scatters. In this paper, we develop a new LDA framework called LDA with worst between-class separation and average within-class compactness (WSAC) by maximiz- ing the ratio of worst-case between-class scatter to average- case within-class scatter. This can be achieved by relaxing the trace ratio optimization to a distance metric learning prob- lem. Comparative experiments demonstrate its effectiveness. In addition, DA counterparts using the local geometry of data and the kernel trick can likewise be embedded into our frame- work and be solved in the same way.
Journal Article
Semisupervised Sparse Multilinear Discriminant Analysis
2014
Various problems are encountered when adopting ordinary vector space algorithms for high-order tensor data input. Namely, one must overcome the Small Sample Size (SSS) and overfitting problems. In addition, the structural information of the original tensor signal is lost during the vectorization process. Therefore, comparable methods using a direct tensor input are more appropriate. In the case of electrocardiograms (ECGs), another problem must be overcome; the manual diagnosis of ECG data is expensive and time consuming, rendering it difficult to acquire data with diagnosis labels. However, when effective features for classification in the original data are very sparse, we propose a semisupervised sparse multilinear discriminant analysis (SSSMDA) method. This method uses the distribution of both the labeled and the unlabeled data together with labels discovered through a label propagation Mgorithm. In practice, we use 12-lead ECGs collected from a remote diagnosis system and apply a short-time-fourier transformation (STFT) to obtain third-order tensors. The experimental results highlight the sparsity of the ECG data and the ability of our method to extract sparse and effective features that can be used for classification.
Journal Article
The coexistence of seven sympatric fulvettas in Ailao Mountains,Ejia Town,Yunnan Province
by
Ji XIA Fei WU Wan-Zhao HU Jian-Ling FANG Xiao-Jun YANG
in
Animal behavior
,
Animal Distribution - physiology
,
Animals
2015
The coexistence of ecologically similar species sharing sympatric areas is a central issue of community ecology. Niche differentiation is required at least in one dimension to avoid competitive exclusion. From 2012-2014, by adopting the methods of mist-nets and point counts to evaluate spatial niche partitioning and morphological differentiations, we explored the coexistence mechanisms of seven sympatric fulvettas in Ailao Mountains, Ejia town, Yunnan Province, China. The microhabitats of these seven fulvettas were significantly different in elevation, roost site height and vegetation coverage, indicating a spatial niche segregation in different levels. Approximately, 90.30% of the samples were correctly classified by linear discriminant analysis(LDA) with correct rates at 91.20%-100%, except the White-browed fulvetta(Alcippe vinipectus)(65.4%) and the Streak-throated fulvetta(A. cinereiceps)(74.6%). The seven fulvettas were classified into four guilds based on their specific morphological characters, suggesting that the species in each guild use their unique feeding ways to realize resource partitioning in the overlapped areas. These finding indicate that through multi-dimensional spatial niche segregation and divergence in resource utilizing, the interspecific competition among these seven fulvettas is minimized, whereas, coexistence is promoted.
Journal Article
Classification of breast lesions based on a dual S-shaped logistic model in dynamic contrast enhanced magnetic resonance imaging
by
DANG Yi GUO Li LV DongJiao WANG XiaoYing ZHANG Jue
in
Adult
,
Aged
,
Biomedical and Life Sciences
2011
This study proposes a novel dual S-shaped logistic model for automatically quantifying the characteristic kinetic curves of breast lesions and for distinguishing malignant from benign breast tumors on dynamic contrast enhanced (DCE) magnetic resonance (MR) images. D(α, β) is the diagnostic parameter derived from the logistic model. Significant differences were found in D(α, β) between the malignant benign groups. Fisher's Linear Discriminant analysis correctly classified more than 90% of the benign and malignant kinetic breast data using the derived diagnostic parameter (D(α, β)). Receiver operating characteristic curve analysis of the derived diagnostic parameter (D(α, β)) indicated high sensitivity and specificity to differentiate malignancy from benignancy. The dual S-shaped logistic model was effectively used to fit the kinetic curves of breast lesions in DCE-MR. Separation between benign and malignant breast lesions was achieved with sufficient accuracy by using the derived diagnostic parameter D(α, β) as the lesion's feature. The proposed method therefore has the potential for computer-aided diagnosis in breast tumors.
Journal Article