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Uncertainty assessment of the moderate resolution imaging spectroradiometer (MODIS) leaf area index (LAI) and the fraction of photosynthetically active radiation absorbed by vegetation (FPAR) retrieval algorithm can provide a scientific basis for the usage and improvement of this widely-used product. Previous evaluations generally depended on the intercomparison with other datasets as well as direct validation using ground measurements, which mix the uncertainties from the model, inputs, and assessment method. In this study, we adopted the evaluation method based on three-dimensional radiative transfer model (3D RTM) simulations, which helps to separate model uncertainty and other factors. We used the well-validated 3D RTM LESS (large-scale remote sensing data and image simulation framework) for a grassland scene simulation and calculated bidirectional reflectance factors (BRFs) as inputs for the LAI/FPAR retrieval. The dependency between LAI/FPAR truth and model estimation serves as the algorithm uncertainty indicator. This paper analyzed the LAI/FPAR uncertainty caused by inherent model uncertainty, input uncertainty (BRF and biome classification), clumping effect, and scale dependency. We found that the uncertainties of different algorithm paths vary greatly (−6.61% and +84.85% bias for main and backup algorithm, respectively) and the “hotspot” geometry results in greatest retrieval uncertainty. For the input uncertainty, the BRF of the near-infrared (NIR) band has greater impacts than that of the red band, and the biome misclassification also leads to nonnegligible LAI/FPAR bias. Moreover, the clumping effect leads to a significant LAI underestimation (−0.846 and −0.525 LAI difference for two clumping types), but the scale dependency (pixel size ranges from 100 m to 1000 m) has little impact on LAI/FPAR uncertainty. Overall, this study provides a new perspective on the evaluation of LAI/FPAR retrieval algorithms.

Background The chlorophyll content has a strong influence on plant photosynthesis and crop growth and is a key factor for understanding the functioning of farming systems. Therefore, the accurate estimation of chlorophyll content (Cab) is important in precision agriculture. In this study, the three-dimensional radiative transfer model (3DRTM) was used to calculate the radiative transfer and simulate the canopy hyperspectral image of a rice field. Then, a physically based joint inversion model was developed using an iterative optimization approach with penalty function and a priori information constraints to estimate chlorophyll content efficiently and accurately from the hyperspectral curve of a rice canopy. Results The inversion model demonstrates that the sparrow search algorithm (SSA) can estimate rice Cab, providing relatively satisfactory Cab estimation outcomes. In addition, the inversion of the SSA method with or without carotenoids content (Car) constraints was compared, and compared to the inversion of Cab without Car constraints [coefficient of determination (R 2 ) = 0.690, root mean square error (RMSE) = 7.677 µg/cm 2 )], the SSA with constraints was more accurate (R 2  = 0.812, RMSE = 5.413 µg/cm 2 ). Conclusions The Large-Scale remote sensing data and image simulation framework over heterogeneous 3D scenes (LESS) exhibited higher accuracy in estimating the rice Cab compared to the 1DRTM PROSAIL model, which is constituted by coupling the Leaf Optical Properties Spectra (PROSPECT) model and the Scattering by Arbitrarily Inclined Leaves (SAIL) model. The 3DRTM is conducive to precisely estimating Cab from the hyperspectral data of the rice canopy, thereby holding great potential for precise nutrient management in rice cultivation.

Wetland ecosystems, particularly marsh wetlands, are vital for carbon cycling, yet the accurate estimation of the fraction of absorbed photosynthetically active radiation (FPAR) in these environments is challenging due to their complex structure and limited field data. This study employs the large-scale remote sensing data and image simulation framework (LESS), a 3D radiative transfer model, to simulate FPAR and vegetation indices (VIs) under controlled conditions, including variations in vegetation types, soil types, chlorophyll content, solar and observation angles, and plant density. By simulating 8064 wetland scenes, we overcame the limitations of field measurements and conducted comprehensive quantitative analyses of the relationship between the FPAR and VI (which is essential for remote sensing-based FPAR estimation). Nine VIs (NDVI, GNDVI, SAVI, RVI, EVI, MTCI, DVI, kNDVI, RDVI) effectively characterized FPAR, with the following saturation thresholds quantified: inflection points (FPAR.inf, where saturation begins) ranged from 0.423 to 0.762 (mean = 0.594) and critical saturation points (FPAR.sat, where saturation is complete) from 0.654 to 0.889 (mean = 0.817). The Enhanced Vegetation Index (EVI) and Soil-Adjusted Vegetation Index (SAVI) showed the highest robustness against saturation and environmental variability for FPAR estimation in reed (Phragmites australis) marshes. These findings provide essential support for FPAR estimation in marsh wetlands and contribute to quantitative studies of wetland carbon cycling.

The fraction of absorbed photosynthetically active radiation (FAPAR) is one of the bio-geophysical Essential Climate Variables assessed through remote sensing observations and distributed globally by space and environmental agencies. Any reliable remote sensing product should be benchmarked against a reference, which is normally determined by means of ground-based measurements. They should generally be aggregated spatially to be compared with remote sensing products at different resolutions. In this work, the effectiveness of various in situ sampling methods proposed to assess FAPAR from flux measurements was evaluated using a three-dimensional radiative transfer framework over eight virtual vegetated landscapes, including dense forests (leaf-on and leaf-off models), open canopies, sparse vegetation, and agricultural fields with a nominal extension of 1 hectare. The reference FAPAR value was determined by summing the absorbed PAR-equivalent photons by either all canopy components, both branches and leaves, or by only the leaves. The incoming and upwelling PAR fluxes were simulated in different illumination conditions and at a high spatial resolution (50 cm). They served to replicate in situ virtual FAPAR measurements, which were carried out using either stationary sensor networks or transects. The focus was on examining the inherent advantages and drawbacks of in situ measurement protocols against GCOS requirements. Consequently, the proficiency of each sampling technique in reflecting the distribution of incident and reflected PAR fluxes—essential for calculating FAPAR—was assessed. This study aims to support activities related to the validation of remote sensing FAPAR products by assessing the potential uncertainty associated with in situ determination of the reference values. Among the sampling schemes considered in our work, the cross shaped sampling schemes showed a particular efficiency in properly representing the pixel scale FAPAR over most of the scenario considered.

Accurately quantifying fine-scale forest canopy-absorbed photosynthetically active radiation (APAR) is essential for monitoring forest growth and understanding ecological processes. The development of 3D radiative transfer models (3D RTMs) enables the precise simulation of canopy–light interactions, facilitating better quantification of forest canopy radiation dynamics. However, the complex parameters of 3D RTMs, particularly detailed 3D scene structures, pose challenges to the simulation of radiative information. While high-resolution LiDAR offers precise 3D structural data, the effectiveness of different tree crown reconstruction methods for APAR quantification using airborne laser scanning (ALS) data has not been fully investigated. In this study, we employed three ALS-based tree crown reconstruction methods: alphashape, ellipsoid, and voxel-based combined with the 3D RTM LESS to assess their effectiveness in simulating and quantifying 3D APAR distribution. Specifically, we used two distinct 3D forest scenes from the RAMI-V dataset to simulate ALS data, reconstruct virtual forest scenes, and compare their simulated 3D APAR distributions with the benchmark reference scenes using the 3D RTM LESS. Furthermore, we simulated branchless scenes to evaluate the impact of branches on APAR distribution across different reconstruction methods. Our findings indicate that the alphashape-based tree crown reconstruction method depicts 3D APAR distributions that closely align with those of the benchmark scenes. Specifically, in scenarios with sparse (HET09) and dense (HET51) canopy distributions, the APAR values from scenes reconstructed using this method exhibit the smallest discrepancies when compared to the benchmark scenes. For HET09, the branched scenario yields RMSE, MAE, and MAPE values of 33.58 kW, 33.18 kW, and 40.19%, respectively, while for HET51, these metrics are 12.74 kW, 12.97 kW, and 10.27%. In the branchless scenario, HET09′s metrics are 10.65 kW, 10.22 kW, and 9.79%, and for HET51, they are 2.99 kW, 2.65 kW, and 2.11%. However, differences remain between the branched and branchless scenarios, with the extent of these differences being dependent on the canopy structure. Our conclusion demonstrated that among the three tree crown reconstruction methods tested, the alphashape-based method has the potential for simulating and quantifying fine-scale APAR at a regional scale. It provides a convenient technical support for obtaining fine-scale 3D APAR distributions in complex forest environments at a regional scale. However, the impact of branches in quantifying APAR using ALS-reconstructed scenes also needs to be further considered.

Fuel type is one of the key factors for analyzing the potential of fire ignition and propagation in agricultural and forest environments. The increase of three-dimensional datasets provided by active sensors, such as LiDAR (Light Detection and Ranging), has improved the classification of fuel types through empirical modelling. Empirical methods are site and sensor specific while Radiative Transfer Models (RTM) approaches provide broader universality. The aim of this work is to analyze the suitability of Discrete Anisotropic Radiative Transfer (DART) model to replicate low density small-footprint Airborne Laser Scanning (ALS) measurements and subsequent fuel type classification. Field data measured in 104 plots are used as ground truth to simulate LiDAR response based on the sensor and flight characteristics of low-density ALS data captured by the Spanish National Plan for Aerial Orthophotography (PNOA) in two different dates (2011 and 2016). The accuracy assessment of the DART simulations is performed using Spearman rank correlation coefficients between the simulated metrics and the ALS-PNOA ones. The results show that 32% of the computed metrics overpassed a correlation value of 0.80 between simulated and ALS-PNOA metrics in 2011 and 28% in 2016. The highest correlations were related to high height percentiles, canopy variability metrics as for example standard deviation and Rumple diversity index, reaching correlation values over 0.94. Two metric selection approaches and Support Vector Machine classification method with variants were compared to classify fuel types. The best-fitted classification model, trained with the DART simulated sample and validated with ALS-PNOA data, was obtained using Support Vector Machine method with radial kernel. The overall accuracy of the classification after validation was 88% and 91% for the 2011 and 2016 years, respectively. The use of DART demonstrates its value for simulating generalizable 3D data for fuel type classification providing relevant information for forest managers in fire prevention and extinction.

Atmospheric correction of satellite optical imagery over inland waters is a key remaining challenge in aquatic remote sensing. This is due to numerous confounding factors such as the complexity of water optical properties, the surface glint, the heterogeneous nature of atmospheric aerosols, and the proximity of bright land surfaces. This combination of factors makes it difficult to retrieve accurate information about the system observed. Moreover, the impact of radiance coming from adjacent land (adjacency effects) in complex geometries further adds to this challenge, especially for small lakes. In this study, ten atmospheric correction algorithms were evaluated for high-resolution multispectral imagery of Landsat-8 Operational Land Imager and Sentinel-2 MultiSpectral Instrument using in situ optical measurements from ~300 lakes across Canada. The results of the validation show that the performance of the algorithms varies by spectral band and evaluation metrics. The dark spectrum fitting algorithm had the best performance in terms of similarity angle (spectral shape), while the neural network-based models showed the lowest errors and bias per band. However, none of the tested atmospheric correction algorithms meet a 30% retrieval accuracy target across all the visible bands, likely due to uncorrected adjacency effects. To quantify this process, three-dimensional radiative transfer simulations were performed and compared to satellite observations. These simulations show that up to 60% of the top of atmosphere reflectance in the near-infrared bands over the lake was from the adjacent lands covered with green vegetation. The significance of these adjacency effects on atmospheric correction has been analyzed qualitatively, and potential efforts to improve the atmospheric correction algorithms are discussed.

Tomography aims to recover a three-dimensional (3D) density map of a medium or an object. In medical imaging, it is extensively used for diagnostics via X-ray computed tomography (CT). We define and derive a tomography of cloud droplet distributions via passive remote sensing. We use multi-view polarimetric images to fit a 3D polarized radiative transfer (RT) forward model. Our motivation is 3D volumetric probing of vertically-developed convectively-driven clouds that are ill-served by current methods in operational passive remote sensing. Current techniques are based on strictly 1D RT modeling and applied to a single cloudy pixel, where cloud geometry defaults to that of a plane-parallel slab. Incident unpolarized sunlight, once scattered by cloud-droplets, changes its polarization state according to droplet size. Therefore, polarimetric measurements in the rainbow and glory angular regions can be used to infer the droplet size distribution. This work defines and derives a framework for a full 3D tomography of cloud droplets for both their mass concentration in space and their distribution across a range of sizes. This 3D retrieval of key microphysical properties is made tractable by our novel approach that involves a restructuring and differentiation of an open-source polarized 3D RT code to accommodate a special two-step optimization technique. Physically-realistic synthetic clouds are used to demonstrate the methodology with rigorous uncertainty quantification.

Observation of the spatial distribution of cloud optical thickness (COT) is useful for the prediction and diagnosis of photovoltaic power generation. However, there is not a one-to-one relationship between transmitted radiance and COT (so-called COT ambiguity), and it is difficult to estimate COT because of three-dimensional (3D) radiative transfer effects. We propose a method to train a convolutional neural network (CNN) based on a 3D radiative transfer model, which enables the quick estimation of the slant-column COT (SCOT) distribution from the image of a ground-mounted radiometrically calibrated digital camera. The CNN retrieves the SCOT spatial distribution using spectral features and spatial contexts. An evaluation of the method using synthetic data shows a high accuracy with a mean absolute percentage error of 18% in the SCOT range of 1–100, greatly reducing the influence of the 3D radiative effect. As an initial analysis result, COT is estimated from a sky image taken by a digital camera, and a high correlation is shown with the effective COT estimated using a pyranometer. The discrepancy between the two is reasonable, considering the difference in the size of the field of view, the space–time averaging method, and the 3D radiative effect.

Context In arid and semi-arid regions, the expansion of the shrub-encroached grassland (SEG) has a profound impact on ecosystem dynamics and desertification processes. However, there is a serious lack of research on the interaction between plant community structure and soil using model systems at the scene scale. Objectives A repeatable and scalable soil–canopy 3D model framework for arid areas was established, and provided theoretical support and methodological reference for ecological monitoring and desertification control. Methods This study integrated the three-dimensional radiation transfer model (LESS) with the hyperspectral soil reflectance model (GSV) to build a fully parameterized 3D plant–soil fusion simulation framework. Using this framework, we systematically quantified how community structural characteristics and soil background synergistically regulate vegetation community bidirectional reflectance factor (BRF) and normalized difference vegetation index (NDVI). Finally, we validated the simulation results of the fusion model using Sentinel-2 data to evaluate its applicability and accuracy. Results The simulation results show that the fusion model can accurately reproduce the joint effect of soil reflectance and community structure characteristics on spectral response, especially in the near-infrared (NIR) band with significant differences. The study of community distribution patterns found that the Gap model has the strongest stability and environmental adaptability, while the Spot model can effectively buffer the interference of adverse soil conditions. In addition, the ecological explanatory power and application feasibility of the fusion model were further verified by combining Sentinel-2 NDVI time series data. Conclusions This study expanded the application boundaries of LESS and GSV models at the community scale. This comprehensive simulation method provides an operational solution for the construction of plant community scenarios in arid areas and related research.